Gene detail

Detailed information of XP_048577825.1 in Nematostella vectensis

Genomic Location: NC_064047.1:7088666...7133633
NR annotation: XP_048577825.1, RING finger protein 17 isoform X2 [Nematostella vectensis]
Species Nematostella vectensis · all data for this species · gene families

Gene Structure

More details in JBrowse

Sequence

CDS

LOC116608645

ATGTTAGCAGCCAATAACTACAAATGCTCATTGCTTGAGAATGTAACTGCAAGAGCACTACCAGACAATACCCGGCTTAACAGTAAGGATGGAGTGAGACAAGCAATAGCAGAGGTTGCCAAACAGAAAAAAACAGAGCTCGCACAAAATACAGGACTAAAGTGTGAGGAGTGTTTTAGAGTCACAGCGACCAGTCGATGTATCAAGTGCGAGTGTGTCTTCTGTGCTTTGTGCTTTGAAAAGGTCCATTCCTCATCCCACACACTAAGGAGACACAAGCCTTACCCTATCTCCAAGACCAGTTTGGGATCCGAAGCTGGTTGCCCAGAACACAAAAACAGACCACACGAGTTCTTTGACCGTACAGAGAATCTGCCAGTGTGTTCACACTGTGCGGTGACTGGTGAGCGACATGGGCATGATATTGTACCGATCTCAGATGTGGTTGATGATTTAAAACAACAATTTAAAAGCAGTCTTGAAGATGGACAGAAAATTATCCAGCATTTGGAAAGATCACAGAAGAAACTGTGTCAGGCAGTGTCTCAGGCCAAATCCCAGAAGACCCAGCTTGCAAATGAGATTCGGGAGCACTTTCACTACGTCAATGCACTGTTGCAAATAAGGGAAACTGCTCTGATTAAAGAGCTTGAAACACCCCGTGAAGATGAGGAACAGTTGGAAATGTCCATCAGTGAGAATATAAAAAAGAGCAGAAACGTTATTCAAGACTTAGAAGTTGTTCTCATGGTACCGACAATGCTAATGAATAAGTCCAAAGAGATAATGGACGATTTGAAGAAATTGAAGGAAATGCCATGCGTTGCAGTGAAAACAACAGACTCAAGAGACAATGGGCCAAGGTTCGTGGTTGATAAAGAATACTTGCGGTCCATATCAAATTATGGAGGACTTCAGAATACCAGCAGCTTAAGCTTACAGCTGAAGAAATTAGATGAGGCGGAGGACAAAGATCTACTAGATGATACTTCAGACGAAGAACCTGCACAATCCGACCAGCCAGAACCTGGTCCTGAGATATTAGATACACCAGGTCAAGAGGAGCGCTCTGCTAACCTGACCAGGAGTGTTGCAGCTGCAAAGCTTCTCAGTATCCCTTACCGACATGAGTTGGTCCAGGTTACCCACATCAGAGACCCTTGCTACTTTATGGTCCAGCGACTTGCAGAGCAGGATCAAGTCAATGCCATGATGAATGCCATTCAGATTTACTGTAGAGAAGCTGATACAGAGGATCTAGTCTTTGAGGTCAACGTTGGAGACATGGTGTGTGCCCAGTTCTCGGCTGATAATCTCTGGTATAGAGCTCGAGTCATCAACATATTCTCTGACAATAACCCCAATGTGGTCCCAACCATTGACAACAACATAAGCGTAGAAGTCACCTACATGGACTTTGGAAACACCGAGTGGCTTCCACTTACAAGGATGCGTAAAATGCCCACTCAGTTTCTGGAAGTGCCTGACCTCGCTGTCAACTGTTCGCTGATGGATATTGTACCACCATTTAAGGAAGAGAAATGGCCAGCCAAGGCTATCAAAGCATTTGGAAGTCTGACAGGAGACAAACCACTTCTGATGACCGTGCTGAGGCGACGCGGTGGGAGCCGGATGTACGTCGATCTCAAGAATCCTGACAATGACGAGCCCACACATGATGATGATCGGCCTGCCTCTGTACGAGATGCCTTGGTCTTCCTGGAGGTGGCTTGCTTCAGGAGTCCAGCCTCTGTACCAGAGGGGCACACAATGTTCCCAATGCGTAGCTATAAAGATCCTGTGCTACTTGAAGATGGACAATTTGCGGATGTTCTGGTATCACATGTTACTGGGCCAGATGAGATTTTCCTTCAAAAGTTGCACAGTGAAGAGGTTGTCAAGCTAAGTGGCATAATGAACGAGATGTTGAAGTTGTATAACACCAAGAGGCGAGGGAAGGACAACAGCAGAGTTCTTTGGCCGTATAGAGGTCTTGTGTGTGCTGCCCGGTTCTCGGAAGACAAAGTTTGGTATCGTGCCGTTGTGACAGCCGTATACAGTGACGAGACAGTTGATGTCAGTTATGTGGACTACGGCAACTTTGAGAGGCTTGCGTTTTCTGAGATCAGGAAACTACCGGACATATTTCTTAATCTCCCGAAACAGGCTATACATTGTCAGCTTGTGGACATCAAGCCATTTGGAGAGCAAAAAACTTGGTCTGACCAGACTCGGGAAACTACATGTAATCTGCTGCTCAATAAGTCATTCGTAGCACAAAGAAAAGGTCTGACCAATGGCGTGATGGACGTGATACTCACTGACACGTCTACAGACAAAGATCTTTGCATCAATTCCTTCCTGGTGATGATTGAGCATGCGCAAACCGCCGGTCTTGGCATCATTAAAGCTGATGATATCACAGGAAAGAGCGTGCCAGAGGAACAATCGCAGAGCTGTGCACAAAATATTAATGATAGTGAGCCGACTTGTGACCAAGAACCACTATCAGACGGGAAAACTGAAGAGCAGGATACATTTTCAGAGGGAGTATCGGACACTACACGGTCAGTCGATGATGGACCTGAGGTAGAAATAGAGGAAGACAATGATGAAAAACCTCCACCCGAGATAAAACAAAAACCGGAGGCAAACAATGAAAAACCGACAAACACAGACGTACCGGAAGCCACCAAACCGGAAAATAAACAACAGACGTCTGGTATTGATGTGGCGAAATCTCGCAAATCGGAAGAACCGGAAGTGAGCACACCGGAAGTTAGTCAGACCGAGAGCAAAATCCAGACACCTGGCTACCCCCCACCCGTAATACCACAGGCTAGGCAATTCCAGGCAGGTGTGACGTACGTCGGTATGGATGGATCCATCTACGCCCAGGAAATGAAAGATGGCGATCAAACCCTTATCAACATCATGAAGGATCTCTTGAGGAAGTACACCGACGATCCCGAGACCTCTAGCGCGCCCACTAGCGTCCAGTCTCTGGCTGTTGGTCAGCCCTGCGCGGCGCAATTCGCTGATGACGGCATGTGGTATCGCGCCGTTGTCAGCCGCTTCCATGGCAACGACCGTGTAGAGGTGAACTACGTGGATTTCGGTAACTCTGAGTTGGTTGCACTCTCAGCCCTTCGTACGGATATGCCATATTTGCATGTACCGCGACAGTGCTTACAGCTGAGGCTTCACGGCATTCGACCGGCTACCCCGGACGGCAGCTGGTCTCCTTCAATCATCTCTAAGCTGAACAGCTTGGTGGTTGGCAAGGACTGTGTCGCATTGCAAGAGGGAGAAGCTGTCCCCGGCAAGCCGCTAGAGGTTCGGCTCTGTCTCCCAGAAGGCATCAGCATCACAGAGTTACTTCTTGCGCAGGGACTGGTACGACCTACAGGCCAGGCTGCTGTAGTCGTGCCCAGTCCCCAGGTTATCCCGGCTGGTGCGCGGAACAGGCCTCCACCAAAAAATGTGGAGAAGTCAAGATTATCCGCAGCGCAGGCGCAAATTCACGCCATGCTGATAAGTGCACGCGAAGCCGATAGTATGGTGTCACGCACAGAGCTACCGCAAATTGGCGTGACATTTGACGTGACAGTCACGCACGTGAGTGAGCCCGACTGTATCTATATTCAGCGGGTACCCCCACCAGAAACAGATGATATGGACATCTACGACGCAGACCCTACGCTGATTTTGGCCGAGGACGAATTAGAGAGACTGGAGCGAATGGCAGAAAAGATCAACGGGCCGGATTATTTCAAGAATTTCGAACCACTCGCAGCTGCGCAGAAAGGCATGTTATGCTGCGGACAATACACAGAAGACGACATGTGGTATCGGGCCCAGGTCATCTCGGTGGAGTCTGGCAACCCCCTCAGTGCGCATGTCCGATACATAGATTACGGGAACGACGAGGTGTTACCCCCAGCAAGGTTACGCGGTTTCCCGTCCGAGCTACTCGACCTTCCGATCCAGGCCACGCGCTGCCGCCTCGCTGATATTCAACCACCAGGGGAGACTGCAGATCCAAGCGCTGGCTCTAGCTGGCCTGAGAAAACAAAAGACGTACTAATACAAATTGTTGTGGGGAAAACGCTGACCGCTAAGATCGTGTGTTTTGGTCCGCCTGTGTGCATTTTGCTGTATGACCGTGTACCAGATGACGGAGGAGCAGGAAAAGACATTTCTGTTGGTAAACTACTGGCAGAACAGCAACTTGCCAAGTACATTGGCACTACCACTATGGCCAATACCAGCTCAAATAAAGGTCTCCCTAGACCGGAAATCGATAACGCAAATGTCTCAGAGTTAAAGGCTAAAGCAGACGCGAGCAATGTAGCATTGACTTCGGCCGGAAGTGCTGCCATTCTGTTATCTCCACAGGAGTTTTTGACAGGTACTAAAAAAGCGCAGATAAAACTACCAAATCCTACAAATGTTCAAAGTAAAGATGCCACTGACATTGCCATGACAACATCACCGTCTAAACCATGCAGTGTTTCCGGTAATGTCGTTGTTGAGGGTCAAAGCTTGCCTGACCAGGGTGGTAATGGTAGTACTGTCTTTGCGAAGGCATCTGATGACACTGATGCTAAACCGGAAACAGCGTCATCGGAGCGAAAAGAAGACGTCACTCGACCTATCACTTCCGGTACGTCAGTGTAA

Transcript

rna-XM_048721868.1

GTCTTCGTTATAGGCATGTTAGCAGCCAATAACTACAAATGCTCATTGCTTGAGAATGTAACTGCAAGAGCACTACCAGACAATACCCGGCTTAACAGTAAGGATGGAGTGAGACAAGCAATAGCAGAGGTTgccaaacagaaaaaaacagagCTCGCACAAAATACAGGACTAAAGTGTGAGGAGTGTTTTAGAGTCACAGCGACCAGTCGATGTATCAAGTGCGAGTGTGTCTTCTGTGCTTTGTGCTTTGAAAAGGTCCATTCCTCATCCCACACACTAAGGAGACACAAGCCTTACCCTATCTCCAAGACCAGTTTGGGATCCGAAGCTGGTTGCCCAGAACACAAAAACAGACCACACGAGTTCTTTGACCGTACAGAGAATCTGCCAGTGTGTTCACACTGTGCGGTGACTGGTGAGCGACATGGGCATGATATTGTACCGATCTCAGATGTGGTTGATGATTTAAAACAACAATTTAAAAGCAGTCTTGAAGATGGACAGAAAATTATCCAGCATTTGGAAAGATCACAGAAGAAACTGTGTCAGGCAGTGTCTCAGGCCAAATCCCAGAAGACCCAGCTTGCAAATGAGATTCGGGAGCACTTTCACTACGTCAATGCACTGTTGCAAATAAGGGAAACTGCTCTGATTAAAGAGCTTGAAACACCCCGTGAAGATGAGGAACAGTTGGAAATGTCCATCAGTGAGAATATAAAAAAGAGCAGAAACGTTATTCAAGACTTAGAAGTTGTTCTCATGGTACCGACAATGCTAATGAATAAGTCCAAAGAGATAATGGACGATTTGAAGAAATTGAAGGAAATGCCATGCGTTGCAGTGAAAACAACAGACTCAAGAGACAATGGGCCAAGGTTCGTGGTTGATAAAGAATACTTGCGGTCCATATCAAATTATGGAGGACTTCAGAATACCAGCAGCTTAAGCTTACAGCTGAAGAAATTAGATGAGGCGGAGGACAAAGATCTACTAGATGATACTTCAGACGAAGAACCTGCACAATCCGACCAGCCAGAACCTGGTCCTGAGATATTAGATACACCAGGTCAAGAGGAGCGCTCTGCTAACCTGACCAGGAGTGTTGCAGCTGCAAAGCTTCTCAGTATCCCTTACCGACATGAGTTGGTCCAGGTTACCCACATCAGAGACCCTTGCTACTTTATGGTCCAGCGACTTGCAGAGCAGGATCAAGTCAATGCCATGATGAATGCCATTCAGATTTACTGTAGAGAAGCTGATACAGAGGATCTAGTCTTTGAGGTCAACGTTGGAGACATGGTGTGTGCCCAGTTCTCGGCTGATAATCTCTGGTATAGAGCTCGAGTCATCAACATATTCTCTGACAATAACCCCAATGTGGTCCCAACCATTGACAACAACATAAGCGTAGAAGTCACCTACATGGACTTTGGAAACACCGAGTGGCTTCCACTTACAAGGATGCGTAAAATGCCCACTCAGTTTCTGGAAGTGCCTGACCTCGCTGTCAACTGTTCGCTGATGGATATTGTACCACCATTTAAGGAAGAGAAATGGCCAGCCAAGGCTATCAAAGCATTTGGAAGTCTGACAGGAGACAAACCACTTCTGATGACCGTGCTGAGGCGACGCGGTGGGAGCCGGATGTACGTCGATCTCAAGAATCCTGACAATGACGAGCCCACACATGATGATGATCGGCCTGCCTCTGTACGAGATGCCTTGGTCTTCCTGGAGGTGGCTTGCTTCAGGAGTCCAGCCTCTGTACCAGAGGGGCACACAATGTTCCCAATGCGTAGCTATAAAGATCCTGTGCTACTTGAAGATGGACAATTTGCGGATGTTCTGGTATCACATGTTACTGGGCCAGATGAGATTTTCCTTCAAAAGTTGCACAGTGAAGAGGTTGTCAAGCTAAGTGGCATAATGAACGAGATGTTGAAGTTGTATAACACCAAGAGGCGAGGGAAGGACAACAGCAGAGTTCTTTGGCCGTATAGAGGTCTTGTGTGTGCTGCCCGGTTCTCGGAAGACAAAGTTTGGTATCGTGCCGTTGTGACAGCCGTATACAGTGACGAGACAGTTGATGTCAGTTATGTGGACTACGGCAACTTTGAGAGGCTTGCGTTTTCTGAGATCAGGAAACTACCGGACATATTTCTTAATCTCCCGAAACAGGCTATACATTGTCAGCTTGTGGACATCAAGCCATTTGGAGAGCAAAAAACTTGGTCTGACCAGACTCGGGAAACTACATGTAATCTGCTGCTCAATAAGTCATTCGTAGCACAAAGAAAAGGTCTGACCAATGGCGTGATGGACGTGATACTCACTGACACGTCTACAGACAAAGATCTTTGCATCAATTCCTTCCTGGTGATGATTGAGCATGCGCAAACCGCCGGTCTTGGCATCATTAAAGCTGATGATATCACAGGAAAGAGCGTGCCAGAGGAACAATCGCAGAGCTGTGCACAAAATATTAATGATAGTGAGCCGACTTGTGACCAAGAACCACTATCAGACGGGAAAACTGAAGAGCAGGATACATTTTCAGAGGGAGTATCGGACACTACACGGTCAGTCGATGATGGACCTGAGGTAGAAATAGAGGAAGACAATGATGAAAAACCTCCACCCGAGATAAAACAAAAACCGGAGGCAAACAATGAAAAACCGACAAACACAGACGTACCGGAAGCCACCAAACCGGAAAATAAACAACAGACGTCTGGTATTGATGTGGCGAAATCTCGCAAATCGGAAGAACCGGAAGTGAGCACACCGGAAGTTAGTCAGACCGAGAGCAAAATCCAGACACCTGGCTACCCCCCACCCGTAATACCACAGGCTAGGCAATTCCAGGCAGGTGTGACGTACGTCGGTATGGATGGATCCATCTACGCCCAGGAAATGAAAGATGGCGATCAAACCCTTATCAACATCATGAAGGATCTCTTGAGGAAGTACACCGACGATCCCGAGACCTCTAGCGCGCCCACTAGCGTCCAGTCTCTGGCTGTTGGTCAGCCCTGCGCGGCGCAATTCGCTGATGACGGCATGTGGTATCGCGCCGTTGTCAGCCGCTTCCATGGCAACGACCGTGTAGAGGTGAACTACGTGGATTTCGGTAACTCTGAGTTGGTTGCACTCTCAGCCCTTCGTACGGATATGCCATATTTGCATGTACCGCGACAGTGCTTACAGCTGAGGCTTCACGGCATTCGACCGGCTACCCCGGACGGCAGCTGGTCTCCTTCAATCATCTCTAAGCTGAACAGCTTGGTGGTTGGCAAGGACTGTGTCGCATTGCAAGAGGGAGAAGCTGTCCCCGGCAAGCCGCTAGAGGTTCGGCTCTGTCTCCCAGAAGGCATCAGCATCACAGAGTTACTTCTTGCGCAGGGACTGGTACGACCTACAGGCCAGGCTGCTGTAGTCGTGCCCAGTCCCCAGGTTATCCCGGCTGGTGCGCGGAACAGGCCTCCACCAAAAAATGTGGAGAAGTCAAGATTATCCGCAGCGCAGGCGCAaATTCACGCCATGCTGATAAGTGCACGCGAAGCCGATAGTATGGTGTCACGCACAGAGCTACCGCAAATTGGCGTGACATTTGACGTGACAGTCACGCACGTGAGTGAGCCCGACTGTATCTATATTCAGCGGGTACCCCCACCAGAAACAGATGATATGGACATCTACGACGCAGACCCTACGCTGATTTTGGCCGAGGACGAATTAGAGAGACTGGAGCGAATGGCAGAAAAGATCAACGGGCCGGATTATTTCAAGAATTTCGAACCACTCGCAGCTGCGCAGAAAGGCATGTTATGCTGCGGACAATACACAGAAGACGACATGTGGTATCGGGCCCAGGTCATCTCGGTGGAGTCTGGCAACCCCCTCAGTGCGCATGTCCGATACATAGATTACGGGAACGACGAGGTGTTACCCCCAGCAAGGTTACGCGGTTTCCCGTCCGAGCTACTCGACCTTCCGATCCAGGCCACGCGCTGCCGCCTCGCTGATATTCAACCACCAGGGGAGACTGCAGATCCAAGCGCTGGCTCTAGCTGGCctgagaaaacaaaagacgtaCTAATACAAATTGTTGTGGGGAAAACGCTGACCGCTAAGATCGTGTGTTTTGGTCCGCCTGTGTGCATTTTGCTGTATGACCGTGTACCAGATGACGGAGGAGCAGGAAAAGACATTTCTGTTGGTAAACTACTGGCAGAACAGCAACTTGCCAAGTACATTGGCACTACCACTATGGCCAATACCAGCTCAAATAAAGGTCTCCCTAGACCGGAAATCGATAACGCAAATGTCTCAGAGTTAAAGGCTAAAGCAGACGCGAGCAATGTAGCATTGACTTCGGCCGGAAGTGCTGCCATTCTGTTATCTCCACAGGAGTTTTTGACAGGTACTAAAAAAGCGCAGATAAAACTACCAAATCCtacaaatgttcaaagtaaaGATGCCACTGACATTGCCATGACAACATCACCGTCTAAACCATGCAGTGTTTCCGGTAATGTCGTTGTTGAGGGTCAAAGCTTGCCTGACCAGGGTGGTAATGGTAGTACTGTCTTTGCGAAGGCATCTGATGACACTGATGCTAAACCGGAAACAGCGTCATCGGAGCGAAAAGAAGACGTCACTCGACCTATCACTTCCGGTACGTCAGTGTAAGCAATTCAGCTCTCGTTCTACGTAACTCTCGATGTGTCTCATCTTACGATTCTTTCATCGAGTCTGTAACCTCTCCTGGCGTTACGTACGTCATGGTCACGCAAACCAGGGACGTGCTATTGGCGTCACGAAACCAGGTGTCAGAGTGAAGCATGGTAACGCAACCATGGATTTGTTATTGACAGCTGTACGGTCACGCAGTGTcgatttgttattgttttcacatATGGTCACGCAATCAAAGGAGTCTTACACTACGGTCACGCGACCAAAAGTAACGTATGCTTACGCAACGTGCGATTCGGTGATGGTGCCACTGTGATTAATGgaaaacatttattttgtgTCACAAACTGTCACGTTGATTTGGCAGTGGTGTCATGCAATCAATAAATGTCAGGTAACACGAAACAGTAAGCTGTTAGTCACGCTGTGCCTTATCAAGATGATGCCGTGTCACGCTATCCCTTATCAAGATGATACCGTGCCACGCTACCCCTTATCAAGATGATGTCGTGTGACACTATCCCTTATCAAGATGATGCGGTGTCACGCTACCCCTTATCAAGATGATGTCGTGTCACGCTACCCCTTATCAAGATGATGCCGTGTCACGCTACCACTTATCAAGATGATGTCGTGTGACACTATTCCTTATCAAGATGATGCCGTGTCACGCTATCTCTTATCTAGATGATGCCGTGTCACGCTACCCCTTATCAAGATGATGCCGTGTCACTCTCTTATCAAGATGATGCCTTGTCACGCAACACCTTATCAAGTTGATGCCGTGTCCCGCAACCCCTTATCAAGATGATGCCGAGTCACGCACCATTTCACTCACGGAACATTAGAGACTTTGTGCGAGTCTTTCAACGCTTGCGGTATTTTTTGGATCGGGTCGGACGCGTTAGTTTTGTTCGCCTTGATCTTTTTACAAGGTTAGGTGATCTTTTACCCTTGAGATTACAAGGTGGAAAATAAATggttaaaatattatttagcATTA

Protein

UniProt (Swiss-Prot top hit)

UniProt accession	Description
Q9BXT8	RING finger protein 17 OS=Homo sapiens OX=9606 GN=RNF17 PE=1 SV=3
Q4R3G4	RING finger protein 17 OS=Macaca fascicularis OX=9541 GN=RNF17 PE=2 SV=2
Q99MV7	RING finger protein 17 OS=Mus musculus OX=10090 GN=Rnf17 PE=1 SV=2

Gene family

Family type	Membership / link
Orthogroup (gene family)	OG0003362 (this species only)

Pfam domain

Pfam accession	Pfam name	Description	Type	Source
PF00567 all species →	TUDOR	Tudor domain	Domain	Interproscan

InterPro

InterPro term	Type	Description	Source
IPR002999 all species →	Domain	Tudor domain	Interproscan
IPR035437 all species →	Homologous_superfamily	SNase-like, OB-fold superfamily	Interproscan
IPR039117 all species →	Family	RING finger protein 17	Interproscan
IPR000315 all species →	Domain	B-box-type zinc finger	Interproscan

PANTHER

PANTHER term	Description	Source
PTHR16442 all species →	RING FINGER PROTEIN 17	Interproscan

Gene Ontology

GO term	Category	Description	Source
GO:0008270 all species →	Molecular Function	zinc ion binding	Interproscan

Search by domain instead of by gene. Any accession above (InterPro, Pfam, PANTHER, GO, KEGG) can be used as a query on the Functional Domain Search page, which searches all 148 annotated genomes at once.

KEGG pathway

KO	Enzyme	Enzyme ID	Pathway	Map ID	Source
K18405	TDRD1_4_6_7; tudor domain-containing protein 1/4/6/7	-	Chromosome and associated proteins	ko03036	deepkoala

Searching by KO or pathway ID across all species is available on the KEGG Pathway page.