Gene detail

Detailed information of XP_048578585.1 in Nematostella vectensis

Genomic Location: NC_064034.1:13923107...13933592
NR annotation: XP_048578585.1, 5'-3' exonuclease PLD3 [Nematostella vectensis]
Species Nematostella vectensis · all data for this species · gene families

Gene Structure

More details in JBrowse

Sequence

CDS

Transcript

rna-XM_048722628.1

TTGGGAGTCCTGTGGTATAACGGATTACCTGTGGTATCAAAGTTCTTTGAAGTGAACAACAGAAGTGCTGCAAAGGCATGTGACTTCGAAagcgattaaaaaaaaacgaaatatGATCTGTTAGGCATGACAGAACCAGCGTATACCAGCAGAGGACGAAACGAGAAGTATTTGGGAAGATACACCATCATGGCAGCTCCGGAAGTTGTTAGCTCTCCACAAGAAAGTCTAAATAGAACGCACGGGAGAAGAAGACGAATATTTATCGTATCTTTTGTGTGTTTCCTTGCGATTATCATTGTGGCTGTTGTTGTTCTGCATTTCTATTACAACAGTGGCGTTACAAAGAGTTCGCAAAGCGGTCCTTGCAAGGGTGCGTGCGTTTTAGAAGTTGTCGAAAGCATTCCCCAAGGACTCGCATACCCTTCGAGTGAAGTCGTTCATCCATCGATATACAGTGGCTGGCTCAAGCTCATAAGGTCCGCTAAACAGTCCCTAGACATTGCTGCTGATTACTGGACACTTAGAGGTGTGGATACCGGCACTGATGATCCGACATCAAAGTGGGGGGAGACAATCTTTCGAGAACTCATTGCTCTTGAAAAAAGTGGTGTAAAAATTAGGATTGTGCAATCAAAGGCACCCCCATCGCAAAACAATGATACCAAGATACTTGCTAAGCTGGGTGTGGCTGAAGTACGTAATCTTGATATGAAACGACTTATCGACAGTGGTATACTGCATACTAAGATGTGGCTAGTAGATAAGAAGCATTACTATCTTGGTAGTGCCAATCAGGACTGGAGATCTTTGACTCAGgtgaAAGAGCTGGGCTTGATGACTTACAACTGTTCTTGCCTTGGTGAAGATATCTCAAAGATCTTTGAGGCTTACTGGATGTTAGCTGTGCCAGACTCTAAAATCCCTTCACCTTGGCCTTCTAGATATAACACCAGTAACAACAAAGTTACACCTGCTTCAATAACAATCAATGGAACCGATGATTCCGGCATCTATTTGGCGTCATCCCCACCTGAGCTGTGCCCTTCTGGCAGAACTGTTGACATAGATGCCATCCTGGATGTTATTGGTAAGGCTAAAAAGTTCATCTACATTGAAGTCATGGACTACTTCCCTACTACCTTATACACTAAGACCAAGAAGTATTGGGCTGTTATCGATGATGCACTGCGCCAGGCCGCATTTGACCGCAAAGTGAATGTGCGTCTTCTGGCTGGTTTATGGAATCACACTCGCCCTGATGCTAGAAATTTCCTCCGATCTTTGGCAGCCATCAATGGGACTGACCATGGCAAGGTCAGCGTGCAAACGCGGTTTTTCCATGTGCCAACTTACACACCCGCCCAAGGCAAAATTCCGTTCTCTCGAGTGAACCACGACAAGTTCATGGTGACAGATAACACCGTGTATGTAGGTACTTCCAACTGGGCCGCAGATTACTTCCTGTACACCGGTGGTATCGGCTATGTTATCAGAGGCTCTAATAATGTGCGGGCTCAAGTGGAAGCTGTGTTCGAGAGGGACTGGAATTCAAACTACATCGAAGATGTTTTGTAGACTTAGGAAACTGCGCCCTTCCAATTAGTCAGCTTGGAAGCTGCTCTTAGTTTCGTCCACAAAACGACACAAAGCGGCTAGTCCGATGGAATTGAAACAAGtcgaaaaatattgaaagtaggtcgaaatcaaagaaaaatgaatGAAAGGAAATCTTAGAAATCATTCAATATCTTAATGGCTTCCCACAACTCTTTGCGACTCGCGCATAAGACCGAGGTTCGCTGGCAAACCTCCatgtttttacaattttgtcCCCCTGACCTAGGTTTCATGCTCGCGTCGCTAAGATTTGTGGGAAGACACGGTGAAGGTGAATTGACTGTCAGTCGCAAAGCTAGGCGTTTCCGAAGTGACAAACCTCGAGCCTATCAATAAGTAGTTGTCTATTAGCTAATTGATCTTAATATCATGTCATCGTGTAAATCCAAAAAAGTCAAGCTACATACAAGCAatacttttctttatttggtCTATTTGGTTAATTTGTTACAGATCCTTTAGTATGTTAAATAACACATATCAAAAGTG

Protein

UniProt (Swiss-Prot top hit)

UniProt accession	Description
Q6PB03	5'-3' exonuclease PLD3 OS=Xenopus laevis OX=8355 GN=pld3 PE=2 SV=1
Q640B3	5'-3' exonuclease PLD3 OS=Xenopus tropicalis OX=8364 GN=pld3 PE=2 SV=1
O35405	5'-3' exonuclease PLD3 OS=Mus musculus OX=10090 GN=Pld3 PE=1 SV=1

Gene family

Family type	Membership / link
Orthogroup (gene family)	OG0006732 (this species only)

Pfam domain

Pfam accession	Pfam name	Description	Type	Source
PF13918 all species →	PLDc_3	PLD-like domain	Domain	Interproscan
PF00614 all species →	PLDc	Phospholipase D Active site motif	Family	Interproscan

InterPro

InterPro term	Type	Description	Source
IPR001736 all species →	Domain	Phospholipase D/Transphosphatidylase	Interproscan
IPR050874 all species →	Family	Diverse function phospholipase D-related protein	Interproscan
IPR032803 all species →	Domain	PLD-like domain	Interproscan

PANTHER

PANTHER term	Description	Source
PTHR10185 all species →	PHOSPHOLIPASE D - RELATED	Interproscan

Gene Ontology

GO term	Category	Description	Source
GO:0003824 all species →	Molecular Function	catalytic activity	Interproscan

Search by domain instead of by gene. Any accession above (InterPro, Pfam, PANTHER, GO, KEGG) can be used as a query on the Functional Domain Search page, which searches all 148 annotated genomes at once.

KEGG pathway

KO	Enzyme	Enzyme ID	Pathway	Map ID	Source
K16860	PLD3_4; phospholipase D3/4	EC:3.1.4.4	Membrane trafficking	ko04131	deepkoala

Searching by KO or pathway ID across all species is available on the KEGG Pathway page.