Gene detail

Detailed information of XP_048579207.1 in Nematostella vectensis

Genomic Location: NC_064035.1:14306839...14315218
NR annotation: XP_048579207.1, tubulin beta chain isoform X2 [Nematostella vectensis]

Gene Structure

More details in Jbrowse

Sequence

CDS

Transcript

rna-XM_048723250.1

GTTTGTAAGGTGAATAAAGTTAAGTGAACCAGAGTCGGCAATTAAAAGGCGATAAAGTAACAGGTGAACACGCCCGGTTCTTTGTTCTCTGTTTACTGGTTCGACGCCGGAGAAAGAAAAATGAATATTCAGATCGCTTGAAGTACTTAGAAATAGCAAGCCAACCATGGAAAGTGACGCACTCGTGATATCACTCACTAAGTGAATTCTCTTTTGACAAGCTGCATAAATCTTTTCCCTCATGCCATGCCGCACCGTTGAAAACAACAAGATCAAGCACAGCTAGAAACACAAAGAGACATGCGGGAAATCATCAACATTCAAGTTGGACAATGTGGAAACCAGATAGGTACCGAGGTGTCAAAATGTTTTGGCGAGATATAGCAGAGGAACACGGCATCGACCCTACAGGAGCAAAATCCTTAATCGAGGATACCCATGGACGATTTGACCGGATTGATGTCTATTTCCACGAAGGCAATGGTGGGCGTTATGTCCCAAGGTCCATCCTTGTTGATCTGGAGCCAGGCACGATGGACGCTGTCCGGGGTGGACCACTCGGAAATATGTTCAGACCGGACAACTTCGTCAACAGCCAGAGTGGTGCTGCTAACAACTGGGCCAAGGGGCATTACAGCGAGGGGGCGGAGTTGATTGACAATATCTTTGACGTCCTGCGCAAGGAGGCAGAGAACTGTGACTGCATGCAGGGTGTCCAGCTCATCCAAGCACTTGGAGGCGGGACGGGATCCGGACTTGGGACTTTGATTCTGTCCAAGATTCGTGAGGAGTACCCCGATAGGATCTTGAGCGCCTTCAGTGTCGTGCCCTCCCCTAAGGTATCGGAGACCGTGGTAGAGCCTTACAATGCCACACTTTCCGTCCAccagctagtggaggtagtcGATGAAGATTTCATGTTTGACAATGAAGCCCTGTACGACATTTGCTGCCGTACCCTCAAGCTTGCTAAACCTAACTACGCAGATCTGAATCAGTTGGTTTCCATGGCAATGTGTGGTCTTACAGCAAGCCTACGTTTTCCTGGACAGCTCAACGGGGACCTGCGTAAACTTGCAGTCAACATGGTTCCATTCCCAAGGCTTCACTTTTTCATGCCGGGGTTCGCCCCTCTGGCGAGTCGAGCGAACCAACAATACCAGAATGTGTCCGTAGAGGAGCTGACTCAGCAAATGTTTGACGCGCGGAATATGATGACCGCGTGTGATCCGAGACATGGGCGCTACCTTACTGTTGCCGCCATTTTCAGGGGAAAAATGTCTATGAGAGAGGTTGACGAACAAATGCTGAACACGCAAAACAAGAACAGCCCTTTCTTCGTGGAGTGGATTCCAAACAACGTGAAAACCACAGTGTGCGACATAGCGCCTAAGGGACTCAAGATGGCGGCGACATTTGTAGGCAACAATACAGCGATCCAAGAGCTGTTCAAACGCGTGGGAGAACAATTCACAGCTATGTTCAGGCGCAAGGCTTTTCTCCACTGGTACACTGGTGAGGGGATGGACGAGATGGAGTTTACAGAGGCCGAGTCCAACATGCACGATCTAATAGCAGAATATCAGCAGTACCAGGAGGCGGAAGCGGACATCGAGGGCGAGGTGTCTGACGAGGAGCTGCCAGAGgCCGACCATGCCCACACAGACCAAGATGGCTCCGATGATGTCTTTTCAAAGTAGTAGTGACCTTATTCTAGATTCTCTTACAAACCCGGTCGGTCAAACATTACTGTTTCTTGAAGTCTTTCCCTGAGTTACGTAGCAAAAGCCATTTCACTCATCATAtcaattctttttttgttttatttggagGTTTCATGGCAAAATCGATACCGGGAAAATATAATCTCATTTAAACAAAATCACTAGACGAACAACAAAACATGGTTCGCTAAGATGACTAtctacgtttttttttctgttgacgtgtttgttttttcttactttccttattcgctcttataatttatatataaatgatTTCCTGATCCGCCTAGATTCGTTTAATACTGCCTGCGtgataaacaaataatataaaataataagaaaaaaaagtacatACATACTATTAAACAACCATATACAGAGTTTTGAATAAACCTAAAAAGTCATATAAA

Protein

Uniprot

Uniprot term	Description
P41937	Tubulin beta-4 chain OS=Caenorhabditis elegans OX=6239 GN=tbb-4 PE=3 SV=1
Q9NFZ6	Tubulin beta-2 chain OS=Echinococcus multilocularis OX=6211 GN=TUB-2 PE=3 SV=1
Q6P9T8	Tubulin beta-4B chain OS=Rattus norvegicus OX=10116 GN=Tubb4b PE=1 SV=1

Pfam domain

Pfam accession	Pfam name	Description	Type	Source
PF03953	Tubulin_C	Tubulin C-terminal domain	Domain	Interproscan
PF00091	Tubulin	Tubulin/FtsZ family, GTPase domain	Domain	Interproscan

InterPro

InterPro term	Type	Description	Source
IPR037103	Homologous_superfamily	Tubulin/FtsZ-like, C-terminal domain	Interproscan
IPR036525	Homologous_superfamily	Tubulin/FtsZ, GTPase domain superfamily	Interproscan
IPR008280	Homologous_superfamily	Tubulin/FtsZ, C-terminal	Interproscan
IPR018316	Domain	Tubulin/FtsZ, 2-layer sandwich domain	Interproscan
IPR002453	Family	Beta tubulin	Interproscan
IPR023123	Homologous_superfamily	Tubulin, C-terminal	Interproscan
IPR000217	Family	Tubulin	Interproscan
IPR017975	Conserved_site	Tubulin, conserved site	Interproscan
IPR003008	Domain	Tubulin/FtsZ, GTPase domain	Interproscan

PANTHER

PANTHER term	Description	Source
PTHR11588	TUBULIN	Interproscan

Gene Ontology

GO terms	Category	Description	Source
GO:0003924	Molecular Function	GTPase activity	Interproscan
GO:0005200	Molecular Function	structural constituent of cytoskeleton	Interproscan
GO:0005525	Molecular Function	GTP binding	Interproscan
GO:0005874	Cellular Component	microtubule	Interproscan
GO:0007017	Biological Process	microtubule-based process	Interproscan
GO:0000226	Biological Process	microtubule cytoskeleton organization	Interproscan
GO:0000278	Biological Process	mitotic cell cycle	Interproscan
GO:0005737	Cellular Component	cytoplasm	Interproscan

KEGG pathway

KO	Enzyme	Enzyme ID	pathway	mapID	Source
K07375	TUBB; tubulin beta	-	Exosome	ko04147	deepkoala