Gene detail

Detailed information of XP_048580100.1 in Nematostella vectensis

Genomic Location: NC_064035.1:19359563...19376934
NR annotation: XP_048580100.1, DNA ligase 4 [Nematostella vectensis]
Species Nematostella vectensis · all data for this species · gene families

Gene Structure

More details in JBrowse

Sequence

CDS

LOC5525240

ATGGCGGATTCCAGGAGCCCGTCTGTAGCTTCACAAGTCCCATTTTTCAACTTTTGCATGGCGATGGAGAGGATCTGTGAAGCCAAAGGAAGCATAGAAAAGAAAAGGGATCCTTTAAGGAAGCTTATTTCTAGCTGGAGAGAAGCTCATCGCAGGATTCACGGTAGCACAAAAACTACAGACTCATTGTTTCCATTGTTGCGTCTACTGTTGCCACATCTGGATAAGGATCGCCCTGCTTATGGCATGAAAGAAAACATCTTCGCTAAGTACATTATTGATGTCATGAGCCTTGGTAAGGATAGCAGCAGTGGATGCAAATTACTGAACTATCGACATCCATCCTCCTCCAAACAGGATAGCCAGGGTGACTTTGCGAGTGTTGCATACTTTGTTTTAAAGGACCGTTGTCCAGAAAAGGGAAGTTTGAAAATTGAAGAGGTAAACAAGCTGTTAGATGACATGGCCAATGCTAATCTTGAGAAGAAGAGAGACAATGTCAAGATGTCCATTCAGATGCTTCTGCGGAAATCTAGTGCCAAAGAAGTGAAATGGCTCATCAGAATCATTCTAAAGGAGCTGAAGATGGGTTTGGGAGAAAATTCGGTATTTGCTGTCTTTCATCCTGATGCCCTTGATCATTACAATACCTGTAACAACTTATCCAAGGTTTGCATGGATCTTCATGATCCTAGTGTCCGCATGAACGAAGCAGAAATAACTATTTTCTCAGCATTCAGGCCCATGCTTGCACAGTGGAGTCCCCTGAATCAGGTAGAGGATTTGATGAAGAATCAACCATTTTACATTGAGACCAAGATGGATGGAGAAAGGTTCATCCTTCACAAGCATGGTGACAAATACCGGTATTTCAGCAGAGGGGGAAATGACTTCACTCATACTTTTGGAGAGAATTCCCGTGAGGGTTGCCTCACTCCAAAGATCAATGACTGTTTTGAAAGGTCAATCCATTCGTGCATTCTGGATGGAGAGATGTTGGTTTATGACACATCCAATGAAATTTTTATTACTAAAGCAATGCATGTGGATGTCAAGTCAGCAGCTACCTTTAATGCTGTTCGTCAGCCCTGCTTTGTTGTCTTTGATGTTCTCCTGTACAATGGAAAAAAGCTTGCCAACACACCATTGCATGAACGCCTCAAACTCCTTGAAACGGTTTTTAAGCCTCGTCTAGGGTTCCTTCAATTTGTTGAAAGACAAAATGCATCATCAAATGAAGAAGTGATCAAGTCTTTGAATGAAGCAATCGATCGACGCGAGGAAGGCTTGGTAGTTAAGTCACGAGACTCTGTCTACAAACCCAACGTCAGAAACGGTGGTGGGTGGCTCAAGATAAAGCCGGAGTATGTCGCGAGCCTAAGTGATGACCTCGATGTTGTCATCGTTGGAGGATATTTCGGTGTTGGGCGTCGCCAAGGAATGGTGTCTCACTTCTTATGCGCAGTTGCAGTGCCGAGCGACCGTCGCGGCGAAAAACCATCTCAATTCTATTCCCTCTGTAAAGTTGGGTCAGGTTATACGATGAATGAGTTGGATGAGCTGGGACAACAGCTGAAGCCGCACTGGCAGCCATTCAATCAGGCTAAACCCCCCAAGAGTGTCTGCTTCACACCAGGATTTAAGGAAAAGCCTGACGTGTGGATCGAACCCTCAAAGTCTAAAGTTGTTCAGATCAAAGCAGCTGAGATCACACCCAGCGAAAAATACAGGGCAGGATTCACGCTACGATTTCCGCGGTTGGAATGTGTTAGACACGATAAATCCTGGTACGACTGCCTGGACCTATCAGGACTGGAACAACTCCTAAAGAAAGCGGAAGGCAAGCTAACCTCTCGTCACACCAGTCTGGGAGAGGAGTCTGCTCCAGCCAAAAAGAGAAGCCGCACCACGCAAAAGCGCGCAGAACAAACGCGCGTGAGTGTCGCACCGCAGTTTAAACCTTCGGAGGTATCAACCGTGGCAAAGGTATCGAAGCTTTTCGAAGGAAAGGAGTTCTGTATTGTGAATGGACCTGCCTCTCACCCAAAACACTCCCTGGAGAAAATGATAACACAGCACGGTGGAACATTCACGCAGATCCCGGGACCTGAGACTTACTGCACTATAGCCGATCGACCTAATGTTCGCTTAGGAAATATTATCAAAGACGGGCGATTTGACGTCGTACAAGCAGCATGGCTTATCGATTGTATGAACCAGGCCAAGCTGCTGCCATGGCAACCTGCTCAGATGCTACATACGTCATCAGCAACAACCGCAAAGTTCCGAGAGGAGTATGATCGCCATGGTGACAGCTTCACGTGTGATGCAACCGCGGATTCGCTAAAGACAGTTTTCCACAATATCGCCAATGATGACATTAGTATAACTGCAAAGGAGATTGCTGACATAGAGCAGCGGTATTTTCCCGCCAGCACACCCCACAACTTGTTCCGTACATGCAGGGTCTACCTTGACAAGCTCAAAGATATTGATAACCCAGACACGGTGATCCCCGACTGTAGTCTAGAGCTGACAGCTCTTGAGCTTCGTTGCCATGGCGCCCACATACAAGAGCGGTTTGACGAGACAGTGACACATGTGGTGTTTGATGACCGAGATTTGTCAAGATTACCGACATACCAGCAAATAATGCGAAATCGACCGAAGAAACACCACTTCGTCACAGAGAGTTGGGTAACGCAATCAATTGGCAACGAGAGAATCTTGTCCGAAAGGCAATTTGCACCTCGAGCGTATACTTCAGCTAGCTAG

Transcript

rna-XM_048724143.1

tttgggctccctgtggcaTCGTTTGCGcgaattcaagatggcggattcCAGGAGCCCGTCTGTAGCTTCACAAGTCCCATTTTTCAACTTTTGCATGGCGATGGAGAGGATCTGTGAAGCCAAAGGAAGCATAGAAAAGAAAAGGGATCCTTTAAGGAAGCTTATTTCTAGCTGGAGAGAAGCTCATCGCAGGATTCACGGTAGCACAAAAACTACAGACTCATTGTTTCCATTGTTGCGTCTACTGTTGCCACATCTGGATAAGGATCGCCCTGCTTATGGCATGAAAGAAAACATCTTCGCTAAGTACATTATTGATGTCATGAGCCTTGGTAAGGATAGCAGCAGTGGATGCAAATTACTGAACTATCGACATCCATCCTCCTCCAAACAGGATAGCCAGGGTGACTTTGCGAGTGTTGCATACTTTGTTTTAAAGGACCGTTGTCCAGAAAAGGGAAGTTTGAAAATTGAAGAGGTAAACAAGCTGTTAGATGACATGGCCAATGCTAATCTTGAGAAGAAGAGAGACAATGTCAAGATGTCCATTCAGATGCTTCTGCGGAAATCTAGTGCCAAAGAAGTGAAATGGCTCATCAGAATCATTCTAAAGGAGCTGAAGATGGGTTTGGGAGAAAATTCGGTATTTGCTGTCTTTCATCCTGATGCCCTTGATCATTACAATACCTGTAACAACTTATCCAAGGTTTGCATGGATCTTCATGATCCTAGTGTCCGCATGAACGAAGCAGAAATAACTATTTTCTCAGCATTCAGGCCCATGCTTGCACAGTGGAGTCCCCTGAATCAGGTAGAGGATTTGATGAAGAATCAACCATTTTACATTGAGACCAAGATGGATGGAGAAAGGTTCATCCTTCACAAGCATGGTGACAAATACCGGTATTTCAGCAGAGGGGGAAATGACTTCACTCATACTTTTGGAGAGAATTCCCGTGAGGGTTGCCTCACTCCAAAGATCAATGACTGTTTTGAAAGGTCAATCCATTCGTGCATTCTGGATGGAGAGATGTTGGTTTATGACACATCCAATGAAATTTTTATTACTAAAGCAATGCATGTGGATGTCAAGTCAGCAGCTACCTTTAATGCTGTTCGTCAGCCCTGCTTTGTTGTCTTTGATGTTCTCCTGTACAATGGAAAAAAGCTTGCCAACACACCATTGCATGAACGCCTCAAACTCCTTGAAACggttttTAAGCCTCGTCTAGGGTTCCTTCAATTTGTTGAAAGACAAAATGCATCATCAAATGAAGAAGTGATCAAGTCTTTGAATGAAGCAATCGATCGACGCGAGGAAGGCTTGGTAGTTAAGTCACGAGACTCTGTCTACAAACCCAACGTCAGAAACGGTGGTGGGTGGCTCAAGATAAAGCCGGAGTATGTCGCGAGCCTAAGTGATGACCTCGATGTTGTCATCGTTGGAGGATATTTCGGTGTTGGGCGTCGCCAAGGAATGGTGTCTCACTTCTTATGCGCAGTTGCAGTGCCGAGCGACCGTCGCGGCGAAAAACCATCTCAATTCTATTCCCTCTGTAAAGTTGGGTCAGGTTATACGATGAATGAGTTGGATGAGCTGGGACAACAGCTGAAGCCGCACTGGCAGCCATTCAATCAGGCTAAACCCCCCAAGAGTGTCTGCTTCACACCAGGATTTAAGGAAAAGCCTGACGTGTGGATCGAACCCTCAAAGTCTAAAGTTGTTCAGATCAAAGCAGCTGAGATCACACCCAGCGAAAAATACAGGGCAGGATTCACGCTACGATTTCCGCGGTTGGAATGTGTTAGACACGATAAATCCTGGTACGACTGCCTGGACCTATCAGGACTGGAACAACTCCTAAAGaAAGCGGAAGGCAAGCTAACCTCTCGTCACACCAGTCTGGGAGAGGAGTCTGCTCCAGCCAAAAAGAGAAGCCGCACCACGCAAAAGCGCGCAGAACAAACGCGCGTGAGTGTCGCACCGCAGTTTAAACCTTCGGAGGTATCAACCGTGGCAAAGGTATCGAAGCTTTTCGAAGGAAAGGAGTTCTGTATTGTGAATGGACCTGCCTCTCACCCAAAACACTCCCTGGAGAAAATGATAACACAGCACGGTGGAACATTCACGCAGATCCCGGGACCTGAGACTTACTGCACTATAGCCGATCGACCTAATGTTCGCTTAGGAAATATTATCAAAGACGGGCGATTTGACGTCGTACAAGCAGCATGGCTTATCGATTGTATGAACCAGGCCAAGCTGCTGCCATGGCAACCTGCTCAGATGCTACATACGTCATCAGCAACAACCGCAAAGTTCCGAGAGGAGTATGATCGCCATGGTGACAGCTTCACGTGTGATGCAACCGCGGATTCGCTAAAGACAGTTTTCCACAATATCGCCAATGATGACATTAGTATAACTGCAAAGGAGATTGCTGACATAGAGCAGCGGTATTTTCCCGCCAGCACACCCCACAACTTGTTCCGTACATGCAGGGTCTACCTTGACAAGCTCAAAGATATTGATAACCCAGACACGGTGATCCCCGACTGTAGTCTAGAGCTGACAGCTCTTGAGCTTCGTTGCCATGGCGCCCACATACAAGAGCGGTTTGACGAGACAGTGACACATGTGGTGTTTGATGACCGAGATTTGTCAAGATTACCGACATACCAGCAAATAATGCGAAATCGACCGAAGAAACACCACTTCGTCACAGAGAGTTGGGTAACGCAATCAATTGGCAACGAGAGAATCTTGTCCGAAAGGCAATTTGCACCTCGAGCGTATACTTCAGCTAGCTAGTGCAGCATAGTGTGCATATTGCATATacatagaaaaaataaaggaaCCTCCCCAGGCTGAACATATATCGCTGAATAATTTGTAAATTCATCATCcttcaaaataaattttaaaatta

Protein

UniProt (Swiss-Prot top hit)

UniProt accession	Description
Q90YB1	DNA ligase 4 OS=Gallus gallus OX=9031 GN=LIG4 PE=2 SV=2
P49917	DNA ligase 4 OS=Homo sapiens OX=9606 GN=LIG4 PE=1 SV=2
G3GTP0	DNA ligase 4 OS=Cricetulus griseus OX=10029 GN=LIG4 PE=1 SV=1

Gene family

Family type	Membership / link
Orthogroup (gene family)	OG0002879 (this species only) · gene tree & orthology

Pfam domain

Pfam accession	Pfam name	Description	Type	Source
PF04679 all species →	DNA_ligase_A_C	ATP dependent DNA ligase C terminal region	Family	Interproscan
PF00533 all species →	BRCT	BRCA1 C Terminus (BRCT) domain	Family	Interproscan
PF04675 all species →	DNA_ligase_A_N	DNA ligase N terminus	Family	Interproscan
PF01068 all species →	DNA_ligase_A_M	ATP dependent DNA ligase domain	Domain	Interproscan
PF11411 all species →	DNA_ligase_IV	DNA ligase IV	Family	Interproscan

InterPro

InterPro term	Type	Description	Source
IPR036420 all species →	Homologous_superfamily	BRCT domain superfamily	Interproscan
IPR012310 all species →	Domain	DNA ligase, ATP-dependent, central	Interproscan
IPR036599 all species →	Homologous_superfamily	DNA ligase, ATP-dependent, N-terminal domain superfamily	Interproscan
IPR044125 all species →	Domain	DNA Ligase 4, adenylation domain	Interproscan
IPR000977 all species →	Family	DNA ligase, ATP-dependent	Interproscan
IPR012309 all species →	Domain	DNA ligase, ATP-dependent, C-terminal	Interproscan
IPR001357 all species →	Domain	BRCT domain	Interproscan
IPR012308 all species →	Domain	DNA ligase, ATP-dependent, N-terminal	Interproscan
IPR012340 all species →	Homologous_superfamily	Nucleic acid-binding, OB-fold	Interproscan
IPR029710 all species →	Family	DNA ligase 4	Interproscan
IPR021536 all species →	Domain	DNA ligase IV domain	Interproscan

PANTHER

PANTHER term	Description	Source
PTHR45997 all species →	DNA LIGASE 4	Interproscan

Gene Ontology

GO term	Category	Description	Source
GO:0003910 all species →	Molecular Function	DNA ligase (ATP) activity	Interproscan
GO:0005524 all species →	Molecular Function	ATP binding	Interproscan
GO:0006281 all species →	Biological Process	DNA repair	Interproscan
GO:0006310 all species →	Biological Process	DNA recombination	Interproscan
GO:0003677 all species →	Molecular Function	DNA binding	Interproscan
GO:0071897 all species →	Biological Process	DNA biosynthetic process	Interproscan
GO:0005958 all species →	Cellular Component	DNA-dependent protein kinase-DNA ligase 4 complex	Interproscan
GO:0006297 all species →	Biological Process	nucleotide-excision repair, DNA gap filling	Interproscan
GO:0006303 all species →	Biological Process	double-strand break repair via nonhomologous end joining	Interproscan
GO:0032807 all species →	Cellular Component	DNA ligase IV complex	Interproscan
GO:0051103 all species →	Biological Process	DNA ligation involved in DNA repair	Interproscan

Search by domain instead of by gene. Any accession above (InterPro, Pfam, PANTHER, GO, KEGG) can be used as a query on the Functional Domain Search page, which searches all 148 annotated genomes at once.

KEGG pathway

KO	Enzyme	Enzyme ID	Pathway	Map ID	Source
K10777	LIG4, DNL4; DNA ligase 4	EC:6.5.1.1	DNA repair and recombination proteins	ko03400	deepkoala

Searching by KO or pathway ID across all species is available on the KEGG Pathway page.

Expression pattern (RNA-seq)

Transcript abundance of XP_048580100.1 across 48 RNA-seq samples of Nematostella vectensis. Values are TPM (transcripts per million) from the StringTie quantification; one bar is one sample, grouped and coloured by condition, sorted by expression within each group.

48Samples

37TPM > 0

16Conditions

14.3Max TPM

7.6Mean TPM

By condition

Condition	Samples	TPM > 0	Mean TPM	Max TPM
whole 6 week old aboral regenerate · regenerate 96hpa	3	2	7.39	12.09
whole 6 week old aboral regenerate · regenerate 144hpa	3	3	9.38	12.55
whole 6 week old aboral regenerate · regenerate 0hpa	3	3	6.43	7.87
whole 6 week old aboral regenerate · regenerate 2hpa	3	3	8.04	8.29
whole 6 week old aboral regenerate · regenerate uncut	3	3	9.13	10.05
whole 6 week old aboral regenerate · regenerate 4hpa	3	1	2.64	7.92
whole 6 week old aboral regenerate · regenerate 120hpa	3	2	7.97	13.16
whole 6 week old aboral regenerate · regenerate 36hpa	3	3	10.12	12.50
whole 6 week old aboral regenerate · regenerate 24hpa	3	2	5.93	10.29
whole 6 week old aboral regenerate · regenerate 20hpa	3	3	9.23	10.36
whole 6 week old aboral regenerate · regenerate 16hpa	3	3	9.21	10.53
whole 6 week old aboral regenerate · regenerate 72hpa	3	2	8.32	14.30
whole 6 week old aboral regenerate · regenerate 60hpa	3	3	11.04	12.78
whole 6 week old aboral regenerate · regenerate 48hpa	3	1	3.91	11.74
whole 6 week old aboral regenerate · regenerate 8hpa	3	2	9.34	14.30
whole 6 week old aboral regenerate · regenerate 12hpa	3	1	3.34	10.03

Per sample · hover a bar for the full sample record

Show the sample table (48 samples)

SRA run	Condition	Tissue	Developmental stage	Treatment	Study	TPM
SRR6320836	whole 6 week old aboral regenerate · regenerate 96hpa	whole 6 week old aboral regenerate	six weeks	regenerate 96hpa	SRP125570	12.09
SRR6320863	whole 6 week old aboral regenerate · regenerate 96hpa	whole 6 week old aboral regenerate	six weeks	regenerate 96hpa	SRP125570	10.09
SRR6320837	whole 6 week old aboral regenerate · regenerate 96hpa	whole 6 week old aboral regenerate	six weeks	regenerate 96hpa	SRP125570	0.00
SRR6320847	whole 6 week old aboral regenerate · regenerate 144hpa	whole 6 week old aboral regenerate	six weeks	regenerate 144hpa	SRP125570	12.55
SRR6320838	whole 6 week old aboral regenerate · regenerate 144hpa	whole 6 week old aboral regenerate	six weeks	regenerate 144hpa	SRP125570	8.71
SRR6320841	whole 6 week old aboral regenerate · regenerate 144hpa	whole 6 week old aboral regenerate	six weeks	regenerate 144hpa	SRP125570	6.89
SRR6320840	whole 6 week old aboral regenerate · regenerate 0hpa	whole 6 week old aboral regenerate	six weeks	regenerate 0hpa	SRP125570	7.87
SRR6320846	whole 6 week old aboral regenerate · regenerate 0hpa	whole 6 week old aboral regenerate	six weeks	regenerate 0hpa	SRP125570	6.09
SRR6320839	whole 6 week old aboral regenerate · regenerate 0hpa	whole 6 week old aboral regenerate	six weeks	regenerate 0hpa	SRP125570	5.32
SRR6320842	whole 6 week old aboral regenerate · regenerate 2hpa	whole 6 week old aboral regenerate	six weeks	regenerate 2hpa	SRP125570	8.29
SRR6320848	whole 6 week old aboral regenerate · regenerate 2hpa	whole 6 week old aboral regenerate	six weeks	regenerate 2hpa	SRP125570	8.23
SRR6320861	whole 6 week old aboral regenerate · regenerate 2hpa	whole 6 week old aboral regenerate	six weeks	regenerate 2hpa	SRP125570	7.61
SRR6320845	whole 6 week old aboral regenerate · regenerate uncut	whole 6 week old aboral regenerate	six weeks	regenerate uncut	SRP125570	10.05
SRR6320844	whole 6 week old aboral regenerate · regenerate uncut	whole 6 week old aboral regenerate	six weeks	regenerate uncut	SRP125570	9.58
SRR6320843	whole 6 week old aboral regenerate · regenerate uncut	whole 6 week old aboral regenerate	six weeks	regenerate uncut	SRP125570	7.77
SRR6320872	whole 6 week old aboral regenerate · regenerate 4hpa	whole 6 week old aboral regenerate	six weeks	regenerate 4hpa	SRP125570	7.92
SRR6320849	whole 6 week old aboral regenerate · regenerate 4hpa	whole 6 week old aboral regenerate	six weeks	regenerate 4hpa	SRP125570	0.00
SRR6320873	whole 6 week old aboral regenerate · regenerate 4hpa	whole 6 week old aboral regenerate	six weeks	regenerate 4hpa	SRP125570	0.00
SRR6320882	whole 6 week old aboral regenerate · regenerate 120hpa	whole 6 week old aboral regenerate	six weeks	regenerate 120hpa	SRP125570	13.16
SRR6320883	whole 6 week old aboral regenerate · regenerate 120hpa	whole 6 week old aboral regenerate	six weeks	regenerate 120hpa	SRP125570	10.75
SRR6320850	whole 6 week old aboral regenerate · regenerate 120hpa	whole 6 week old aboral regenerate	six weeks	regenerate 120hpa	SRP125570	0.00
SRR6320851	whole 6 week old aboral regenerate · regenerate 36hpa	whole 6 week old aboral regenerate	six weeks	regenerate 36hpa	SRP125570	12.50
SRR6320852	whole 6 week old aboral regenerate · regenerate 36hpa	whole 6 week old aboral regenerate	six weeks	regenerate 36hpa	SRP125570	9.23
SRR6320855	whole 6 week old aboral regenerate · regenerate 36hpa	whole 6 week old aboral regenerate	six weeks	regenerate 36hpa	SRP125570	8.64
SRR6320854	whole 6 week old aboral regenerate · regenerate 24hpa	whole 6 week old aboral regenerate	six weeks	regenerate 24hpa	SRP125570	10.29
SRR6320853	whole 6 week old aboral regenerate · regenerate 24hpa	whole 6 week old aboral regenerate	six weeks	regenerate 24hpa	SRP125570	7.51
SRR6320856	whole 6 week old aboral regenerate · regenerate 24hpa	whole 6 week old aboral regenerate	six weeks	regenerate 24hpa	SRP125570	0.00
SRR6320859	whole 6 week old aboral regenerate · regenerate 20hpa	whole 6 week old aboral regenerate	six weeks	regenerate 20hpa	SRP125570	10.36
SRR6320860	whole 6 week old aboral regenerate · regenerate 20hpa	whole 6 week old aboral regenerate	six weeks	regenerate 20hpa	SRP125570	9.53
SRR6320857	whole 6 week old aboral regenerate · regenerate 20hpa	whole 6 week old aboral regenerate	six weeks	regenerate 20hpa	SRP125570	7.81
SRR6320881	whole 6 week old aboral regenerate · regenerate 16hpa	whole 6 week old aboral regenerate	six weeks	regenerate 16hpa	SRP125570	10.53
SRR6320880	whole 6 week old aboral regenerate · regenerate 16hpa	whole 6 week old aboral regenerate	six weeks	regenerate 16hpa	SRP125570	8.89
SRR6320858	whole 6 week old aboral regenerate · regenerate 16hpa	whole 6 week old aboral regenerate	six weeks	regenerate 16hpa	SRP125570	8.20
SRR6320862	whole 6 week old aboral regenerate · regenerate 72hpa	whole 6 week old aboral regenerate	six weeks	regenerate 72hpa	SRP125570	14.30
SRR6320865	whole 6 week old aboral regenerate · regenerate 72hpa	whole 6 week old aboral regenerate	six weeks	regenerate 72hpa	SRP125570	10.65
SRR6320864	whole 6 week old aboral regenerate · regenerate 72hpa	whole 6 week old aboral regenerate	six weeks	regenerate 72hpa	SRP125570	0.00
SRR6320867	whole 6 week old aboral regenerate · regenerate 60hpa	whole 6 week old aboral regenerate	six weeks	regenerate 60hpa	SRP125570	12.78
SRR6320866	whole 6 week old aboral regenerate · regenerate 60hpa	whole 6 week old aboral regenerate	six weeks	regenerate 60hpa	SRP125570	11.28
SRR6320869	whole 6 week old aboral regenerate · regenerate 60hpa	whole 6 week old aboral regenerate	six weeks	regenerate 60hpa	SRP125570	9.07
SRR6320870	whole 6 week old aboral regenerate · regenerate 48hpa	whole 6 week old aboral regenerate	six weeks	regenerate 48hpa	SRP125570	11.74
SRR6320868	whole 6 week old aboral regenerate · regenerate 48hpa	whole 6 week old aboral regenerate	six weeks	regenerate 48hpa	SRP125570	0.00
SRR6320871	whole 6 week old aboral regenerate · regenerate 48hpa	whole 6 week old aboral regenerate	six weeks	regenerate 48hpa	SRP125570	0.00
SRR6320875	whole 6 week old aboral regenerate · regenerate 8hpa	whole 6 week old aboral regenerate	six weeks	regenerate 8hpa	SRP125570	14.30
SRR6320874	whole 6 week old aboral regenerate · regenerate 8hpa	whole 6 week old aboral regenerate	six weeks	regenerate 8hpa	SRP125570	13.74
SRR6320876	whole 6 week old aboral regenerate · regenerate 8hpa	whole 6 week old aboral regenerate	six weeks	regenerate 8hpa	SRP125570	0.00
SRR6320877	whole 6 week old aboral regenerate · regenerate 12hpa	whole 6 week old aboral regenerate	six weeks	regenerate 12hpa	SRP125570	10.03
SRR6320878	whole 6 week old aboral regenerate · regenerate 12hpa	whole 6 week old aboral regenerate	six weeks	regenerate 12hpa	SRP125570	0.00
SRR6320879	whole 6 week old aboral regenerate · regenerate 12hpa	whole 6 week old aboral regenerate	six weeks	regenerate 12hpa	SRP125570	0.00

Source: CnidoSite RNA-seq expression matrices (NVECT_TPM, StringTie quantification over 48 runs), joined to SRA sample metadata. Samples whose tissue/treatment is not recorded in the source metadata are grouped by the descriptor carried in the expression matrix itself.