Gene detail

Detailed information of XP_048580175.1 in Nematostella vectensis

Genomic Location: NC_064035.1:7962213...7974077
NR annotation: XP_048580175.1, AP-4 complex subunit beta-1-like isoform X2 [Nematostella vectensis]

Gene Structure

More details in Jbrowse

Sequence

CDS

LOC116619288

ATGTCAGACATGACATATTTTGGGGAGACAGGGAGAAAGGGCGAAGTGAGTGAATTGAGGAAGCTACTGGAGCAAGCTGACTTGCGTCATGAGCAGACTCAGTACACACGGGTGATACAGCGAGTTATCGCATGTATGACAACAGGAATGAATATGTCCTCGCTGTTTATGCAGATGATTAAGGCTGGTGCAACAAACAACCTGGTTCAGAAGAAGCTAGTTTACCTATATATCTGTACATATGCCCAGTCAAACCCTCAATTAGCACTGCTTACAGTGAACACACTGACGAAGGACGCTCAGGACAGAAGTGCTATGATCAGGGGACTGGCCATACGAAGTATGACTTCTCTAAGGCTTCCTGACTTGCTAGAATACATTGAGGAGCCAGTTGTTGCAGGCCTGAGTGACCCTAGCCAGTATGTTCGACGGACTGCAGCTATAGGTTGTGTGAAGCTTTACCATCTAAACCCAGACTTTGTTGAAGAACATCAGGTTATCCAGAAACTACAAGCTTTGATTGAAGATCAGGACCCTCTGGTCATGTGCAACTGTCTGTCAGCTCTAGATGAGGTTCTATCTGCGGATGGGGGCCTCCAAGTGGATCAGGCTCTTGCCCATTTCCTTATGAAAAGGTTAACAAATCTAAGTGAGTGGGGTCAGAGCCAAGTTCTAGGACTGCTTGTTCGATACACACCATTTGATGACCAGGAGCTGTATGAAATTTTAAATGCCACTGACGTATACCTCAAAAGCCCTAATGGTGCTGTCGTCATGGCTTGCATCAATCTATTCATCCATTTATCCAAAAGTGCTAGACATCTGGAGGAGGATATCCTTGAACGCATCAAAGGTCCACTTTTAACCTTGTTATCATCTACCAACTATGAGCTTATCTTCACTGTCCTGTGTCACATTGAGCTGCTGATTGCTAGAGAACCACAGCTGTTTGTACCAGACTACAAGATGTTTTTCTCAAGATTCAATGATCCTCAGTTCTTGAGGAGAAAGAAGCTTCAGATCCTGACTACAATTTCATCCGAATCAAATGTTGAGGAAGTTGTAACAGAATTGAGTGCCAGTGTACATGACGTTGACATAGACTTGGCAAAAGAGTCCATTCATGCTATTGGGCAAATTGCGCTGGTTGTCCCTTCAGCAGCGGAGTACTCCATTGACACTTTGCTCAGTTTTCTCTCCTATGAGATAGAATACATCTCTGCTAAGACCCTGGCTGTTATCTCAGATCTATTCCCAAGTTACGAAAAGTACTGCCTTGCAGTGCTTCCCCAACTGAACGAGTGCATGGATCTAGTTCAGGACCCTGATGGCAAGGCTGCTATTATATGGATAACAGGGGAATATGGCCAGTTTGTCTCAGAAAGCTCATATATGTTGGAAGCACAAGTTGAACATATCGAGGAGGAACAGTCAGCCGAAATCAAGCTTCAGCTTTTGACTGCAGCAATGAAGCTTTTCTTTAAAAGACCTCCAGAATGTCAAGACTTGCTTGGTCGCCTCCTAGCACACTTCATAGACAAGGAAGTCAACACGGACGTCCATGACCGGGCCCTTCTCTATTACCGATTGCTTGAGGCTGGTGTAGAACAGGCCAAGAGGATTGTTTGTGACGTGTCTGATAGGACCCTAGGTTCCCCAAGAAAAGCCAGAAAAGATGAAAAATTTATGGAAACTTTATTCTCCGAGTTCAATACATTATCTGTCGTGTATGATCAACGCTCCATTTCTTTTACCAAGCAAACCATTCCCTTTATCAAGGGCCAACTTTTCCAGGGACAAAAAGATTCATCCGAGAGAAATAATAGCACAGCGACACCAGCTGACATGTCGCTCCCTCAATCCAACAAAGTCGTTGTTGGAAATCTTCTGGGACATGACGTTGGTCTTGAAACGCCTAATCACAACTCGCTCATGTTAGGTGCCAGACCATCGCTCTCGGCTTCTGACTTTCAAAAAAAATGGATGACGCTTTTACAGAGTGCCAGTTTTGCCAAAGTGTTGTCTTCTCGAGTTTTTTTCTGGTGCCAGTTTTGA

Transcript

rna-XM_048724218.1

AAACGGCTCAAGGTCACCAGCGGTAGCAtcgatttcaaaatggcggacggtCGTACAGTTTAAAACAGATACATATAGACAGAATAGAGCCTCGTTTCATGAGAGGAATTTAAAGATTTATTTGTTTGAGCAAAATGGAAAGGCACCGGTTTTGAAAGAGATTTGGTAGATGTCAGACATGACATATTTTGGGGAGACAGGGAGAAAGGGCGAAGTGAGTGAATTGAGGAAGCTACTGGAGCAAGCTGACTTGCGTCATGAGCAGACTCAGTACACACGGGTGATACAGCGAGTTATCGCATGTATGACAACAGGAATGAATATGTCCTCGCTGTTTATGCAGATGATTAAGgcTGGTGCAACAAACAACCTGGTTCAGAAGAAGCTAGTTTACCTATATATCTGTACATATGCCCAGTCAAACCCTCAATTAGCACTGCTTACAGTGAACACACTGACGAAGGACGCTCAGGACAGAAGTGCTATGATCAGGGGACTGGCCATACGAAGTATGACTTCTCTAAGGCTTCCTGACTTGCTAGAATACATTGAGGAGCCAGTTGTTGCAGGCCTGAGTGACCCTAGCCAGTATGTTCGACGGACTGCAGCTATAGGTTGTGTGAAGCTTTACCATCTAAACCCAGACTTTGTTGAAGAACATCAGGTTATCCAGAAACTACAAGCTTTGATTGAAGATCAGGACCCTCTGGTCATGTGCAACTGTCTGTCAGCTCTAGATGAGGTTCTATCTGCGGATGGGGGCCTCCAAGTGGATCAGGCTCTTGCCCATTTCCTTATGAAAAGgttaaCAAATCTAAGTGAGTGGGGTCAGAGCCAAGTTCTAGGACTGCTTGTTCGATACACACCATTTGATGACCAGGAGCTGTATGAAATTTTAAATGCCACTGACGTATACCTCAAAAGCCCTAATGGTGCTGTCGTCATGGCTTGCATCAATCTATTCATCCATTTATCCAAAAGTGCTAGACATCTGGAGGAGGATATCCTTGAACGCATCAAAGGTCCACTTTTAACCTTGTTATCATCTACCAACTATGAGCTTATCTTCACTGTCCTGTGTCACATTGAGCTGCTGATTGCTAGAGAACCACAGCTGTTTGTACCAGACTACAAGATGTTTTTCTCAAGATTCAATGATCCTCAGTTCTTGAGGAGAAAGAAGCTTCAGATCCTGACTACAATTTCATCCGAATCAAATGTTGAGGAAGTTGTAACAGAATTGAGTGCCAGTGTACATGACGTTGACATAGACTTGGCAAAAGAGTCCATTCATGCTATTGGGCAAATTGCGCTGGTTGTCCCTTCAGCAGCGGAGTACTCCATTGACACTTTGCTCAGTTTTCTCTCCTATGAGATAGAATACATCTCTGCTAAGACCCTGGCTGTTATCTCAGATCTATTCCCAAGTTACGAAAAGTACTGCCTTGCAGTGCTTCCCCAACTGAACGAGTGCATGGATCTAGTTCAGGACCCTGATGGCAAGGCTGCTATTATATGGATAACAGGGGAATATGGCCAGTTTGTCTCAGAAAGCTCATATATGTTGGAAGCACAAGTTGAACATATCGAGGAGGAACAGTCAGCCGAAATCAAGCTTCAGCTTTTGACTGCAGCAATGAAGCTTTTCTTTAAAAGACCTCCAGAATGTCAAGACTTGCTTGGTCGCCTCCTAGCACACTTCATAGACAAGGAAGTCAACACGGACGTCCATGACCGGGCCCTTCTCTATTACCGATTGCTTGAGGCTGGTGTAGAACAGGCCAAGAGGATTGTTTGTGACGTGTCTGATAGGACCCTAGGTTCCCCAAGAAAAGCcagaaaagatgaaaaatttATGGAAACTTTATTCTCCGAGTTCAATACATTATCTGTCGTGTATGATCAACGCTCCATTTCTTTTACCAAGCAAACCATTCCCTTTATCAAGGGCCAACTTTTCCAGGGACAAAAAGATTCATCCGAGAGAAATAATAGCACAGCGACACCAGCTGACATGTCGCTCCCTCAATCCAACAAAGTCGTTGTTGGAAATCTTCTGGGACATGACGTTGGTCTTGAAACGCCTAATCACAACTCGCTCATGTTAGGTGCCAGACCATCGCTCTCGGCTTCTGACTTTCAAAAAAAATGGATGACGCTTTTACAGAGTGCCAGTTTTGCCAAAGTGTTGTCTTCTCGAGTTTTTTTCTGGTGCCAGTTTTGAGAAGGTATTGTCTGAGGTACCTTCTGTACCGGAGCAGTTCCAGCAAAGTCTAGCTTCAAGAAGCATTATGACGATGGCCAGCAGCCCAGCTGGACAACCCGTGCAGAAATACTTCTTCTTTGCCCA

Protein

Uniprot

Uniprot term	Description
Q9Y6B7	AP-4 complex subunit beta-1 OS=Homo sapiens OX=9606 GN=AP4B1 PE=1 SV=2
Q9WV76	AP-4 complex subunit beta-1 OS=Mus musculus OX=10090 GN=Ap4b1 PE=1 SV=2
Q9LDK9	Beta-adaptin-like protein A OS=Arabidopsis thaliana OX=3702 GN=BETAA-AD PE=1 SV=1

Pfam domain

Pfam accession	Pfam name	Description	Type	Source
PF01602	Adaptin_N	Adaptin N terminal region	Repeat	Interproscan

InterPro

InterPro term	Type	Description	Source
IPR026739	Family	AP complex subunit beta	Interproscan
IPR011989	Homologous_superfamily	Armadillo-like helical	Interproscan
IPR002553	Domain	Clathrin/coatomer adaptor, adaptin-like, N-terminal	Interproscan
IPR016342	Family	AP-1/2/4 complex subunit beta	Interproscan
IPR016024	Homologous_superfamily	Armadillo-type fold	Interproscan

PANTHER

PANTHER term	Description	Source
PTHR11134	ADAPTOR COMPLEX SUBUNIT BETA FAMILY MEMBER	Interproscan

Gene Ontology

GO terms	Category	Description	Source
GO:0016192	Biological Process	vesicle-mediated transport	Interproscan
GO:0006886	Biological Process	intracellular protein transport	Interproscan
GO:0030117	Cellular Component	membrane coat	Interproscan
GO:0015031	Biological Process	protein transport	Interproscan
GO:0030276	Molecular Function	clathrin binding	Interproscan

KEGG pathway

KO	Enzyme	Enzyme ID	pathway	mapID	Source
K12401	AP4B1; AP-4 complex subunit beta-1	-	Membrane trafficking	ko04131	deepkoala