Gene detail

Detailed information of XP_048580652.1 in Nematostella vectensis

Genomic Location: NC_064036.1:10830440...10845090
NR annotation: XP_048580652.1, peroxisomal targeting signal 1 receptor isoform X1 [Nematostella vectensis]
Species Nematostella vectensis · all data for this species · gene families

Gene Structure

More details in JBrowse

Sequence

CDS

Transcript

rna-XM_048724695.1

CTTGCTGCGTAACCGCGCAGTATTCACAAAAATATTGGTTCGAACAGAATCTAGCATGTTATGATAGAATAGTGGAAAACATGCTGTATGTAATTCACATCTCCCTCTGACGATGTCTCGCCGAAGAAAAGTTGTGTTACTGATATAAGAAATTATTATAAGAAGTACTGCACCTTTTTTCCTTGGTGTAAATAGCAAAGATGGCGATGCGTGATTTGGTGGAGGGGGAGTGTGGTGACGCTAATCCACTGATGAAGCTTGTATCCCATTTCACACAGGATAAATCCCTACACCAGGAAGGGCTGATCCATGACAGATTTGGTCCCCATCAACATTTGCAAGAGAGAGCATTTCACGAAAGACAAGAGCATGAGCTTGTTGAAGAGTATCTGCAGGATCCAAGATCCCATGCACCTCCTCAGACATTCCGCATGGATGACTTGTTACATGAGATGACAGAAATAGAACAAAGAAGCCTGCACCATACCCCTGTTAGAGCACCAGGAGTAGCAGATCTCGCAACAAGTGAATGGGCAGCAGAGTATATGTCTACAGAGGTTCAAAGGGCAGAAGAATGGGCTCAAGAGTATGACAACAGTGAGATATTACACTCTGCAGagcTGCATAGCAGTCCTGCAAAATGGGCAGCTGAATACCTTGAAGATGTGAAGCATGAAGGCGTGTTGGATGACTCAAAATGGGTGGTAGAGTACAAACAGGAACTGGATGACAATGACGCTCTGGCTTCAGTTGCTGGAACTCTATTAGAAAATAACACAGATCCTAAAATAGCTAATTCCAAGTTTATGCAATTCATGCGGAAGCTAAGAGATGGTGAATACAAAGTCGAAAATAACCAGGTTGTTGATGCACGGACAGGACAAGAAGTGACTGACGAGTCGTCTGAAGCACAGGAATGGGTAGCAGATTATGAGAAATTCAGTGCAGAAGGTGACTGGGCATCAGAATTCATGCAGGCGGGCGCCTCATCTAGGGAAGACGTGGATTTCTGGGACAATTTGCAAGGTGAATGGGAGTCTCTTGTCAGacaAGATGGTGATGAGGCCCATAGCTGGTTCACAGATTATGAGGAAGAAACCAATAAGGAGTATAAGTTTGAAGAAGACAATCCTTTGCTAGATCACCCCAATCCATTCGAAGAAGGGCTCAAGAAATTGAAGGAAGGGGACTTGATCAGTGCAATATTGCTTTTTGAGGCAGAGGTTCGACAAAATCCTGAACATGCTGAGGCGTGGCAGTATCTAGGAACTAGCCAAGCGGAGAATGAACAGGACATAGCAGCTATCAGTGCCCTAAATCGGTGTGTGGATCTGCAGCCCGGGAACCTTGAGGCATTGATGGCACTTGCAGTAAGCCTCACGAACGAGTCCATGCAGTCACAGGCCTGTAAGACCCTTAAAGACTGGCTAAGGGCCAACCCCAGGTATAAAGATATCGTGCCACCCTCAGACGACCAAGCTGGTCAGCGTCCTCGCCCAATAACGTCTAGCATCATGACAAGTGATATGTACAACGAGATCCGGGATATGTACATTGCAGCTGCGCAGAGGGCGCCGGAGAACGATCTAGATGCCAACGTACAGGTCGGTCTTGGCGTGCTTTTCAATCTCTCCGGCGAATACGACAAAGCAGTCGATTGTTTCCAGGCCGCGGTGATTGCGCGGCCGGAAGACGCCTTACTATGGAATAGACTGGGCGCGACTCTTGCAAACGGCGGGCGCAGCGAGGAAGCGGTCGACGCGTACAGACATGCGCTGTCATACAGTCCAGGTTTCATCCGTTGTCGTTACAACCTCGGTATCAGTTGCATCAACTTGAGCGCACATCAACAGGCGGTGGAGCATTTTCTTACGGCGCTTAACATGCAGAGGAAGGGTGGTGTCGGTTCTGATGGCACCGTAACCACGATGTCGGACAACATCTGGTCCACTTTACGGATGACACTATCGCTCATGGGACGGTCCGACTTGCACAAGGCTGTGGATAAGCGAGACCTTGATCGACTTAACGAGGTGTTTTCCCATGAATCAGAGCCCGTGCCGGTTATGGTATAACACAGCATCATCCAGCTTGATTGATTTAACGAGGTGTTTCTTCACAAATGAGAACCCGTCCCAGTCATGGTATAACACAGCATCGACCAGCTTGATCGACTTAACGAGGTGTTTCTCACGATTTAGAACCGGTCATGGTTTGCCATCATTTTATTGACGTGACAAGTGCTTCATCACGAATGGGAACCCGTAGCAATCATGTTACGACAATATAAGCTTTCAAGTTTTCTctaagggcgcgttttttttttactcgtgattccaGAATGAGAATaattagaagaaaaaaagcgcgcgttcgtcTATCCCGCGTTCCGattccggaatggaatgaaggccatttCACCCATTCTGCTtcctgtagcagaatgactcgaatgccattttgaacattctctaccaaccattcccattctagaatgataggggaaaaaaCTCACCCTAAAAGAACCCTGGTTTTGGTACTGCAAACTTCAAACTAAAAAAGATTTGGAAACCAAAAAACCATGATACGAACGGAAATAGACTTGTCCTTGGTTATGGCTCAAAAGAGGACCATACAAAGAATGTACAAGACTGGAGGGTTGGTATAAACAGTGTTAGCAAAGGCCACAAAATACACGCCGTTTATGCGCTATTGTTTTCAGAGTATTTCCGAGATGAATGAatgattttaatattttttttatctaatacGCTTTAATGACCAtactaaaataaaatgttttcttatgCAA

Protein

UniProt (Swiss-Prot top hit)

UniProt accession	Description
A0A1L8FDW4	Peroxisomal targeting signal 1 receptor OS=Xenopus laevis OX=8355 GN=pex5.S PE=1 SV=1
Q1RMV0	Peroxisomal targeting signal 1 receptor OS=Bos taurus OX=9913 GN=PEX5 PE=2 SV=1
O70525	Peroxisomal targeting signal 1 receptor OS=Cavia porcellus OX=10141 GN=PEX5 PE=2 SV=1

Gene family

Family type	Membership / link
Orthogroup (gene family)	OG0003346 (this species only)

Pfam domain

Pfam accession	Pfam name	Description	Type	Source
PF13432 all species →	TPR_16	Tetratricopeptide repeat	Repeat	Interproscan

InterPro

InterPro term	Type	Description	Source
IPR024111 all species →	Family	PEX5/PEX5L	Interproscan
IPR019734 all species →	Repeat	Tetratricopeptide repeat	Interproscan
IPR011990 all species →	Homologous_superfamily	Tetratricopeptide-like helical domain superfamily	Interproscan

PANTHER

PANTHER term	Description	Source
PTHR10130 all species →	PEROXISOMAL TARGETING SIGNAL 1 RECEPTOR PEX5	Interproscan

Gene Ontology

GO term	Category	Description	Source
GO:0005052 all species →	Molecular Function	peroxisome matrix targeting signal-1 binding	Interproscan
GO:0005778 all species →	Cellular Component	peroxisomal membrane	Interproscan
GO:0005829 all species →	Cellular Component	cytosol	Interproscan
GO:0016560 all species →	Biological Process	protein import into peroxisome matrix, docking	Interproscan
GO:0005515 all species →	Molecular Function	protein binding	Interproscan

Search by domain instead of by gene. Any accession above (InterPro, Pfam, PANTHER, GO, KEGG) can be used as a query on the Functional Domain Search page, which searches all 148 annotated genomes at once.

KEGG pathway

KO	Enzyme	Enzyme ID	Pathway	Map ID	Source
K13342	PEX5, PXR1; peroxin-5	-	Membrane trafficking	ko04131	deepkoala

Searching by KO or pathway ID across all species is available on the KEGG Pathway page.

Expression pattern (RNA-seq)

Transcript abundance of XP_048580652.1 across 48 RNA-seq samples of Nematostella vectensis. Values are TPM (transcripts per million) from the StringTie quantification; one bar is one sample, grouped and coloured by condition, sorted by expression within each group.

48Samples

39TPM > 0

16Conditions

13.5Max TPM

7.5Mean TPM

By condition

Condition	Samples	TPM > 0	Mean TPM	Max TPM
whole 6 week old aboral regenerate · regenerate 96hpa	3	3	10.97	12.09
whole 6 week old aboral regenerate · regenerate 144hpa	3	3	8.74	11.23
whole 6 week old aboral regenerate · regenerate 0hpa	3	3	5.94	7.15
whole 6 week old aboral regenerate · regenerate 2hpa	3	3	8.08	9.67
whole 6 week old aboral regenerate · regenerate uncut	3	3	6.53	7.91
whole 6 week old aboral regenerate · regenerate 4hpa	3	2	6.13	9.29
whole 6 week old aboral regenerate · regenerate 120hpa	3	2	6.76	10.64
whole 6 week old aboral regenerate · regenerate 36hpa	3	3	11.37	13.25
whole 6 week old aboral regenerate · regenerate 24hpa	3	2	7.47	13.46
whole 6 week old aboral regenerate · regenerate 20hpa	3	2	6.68	10.17
whole 6 week old aboral regenerate · regenerate 16hpa	3	3	7.70	8.53
whole 6 week old aboral regenerate · regenerate 72hpa	3	2	7.07	11.86
whole 6 week old aboral regenerate · regenerate 60hpa	3	3	10.89	12.10
whole 6 week old aboral regenerate · regenerate 48hpa	3	2	7.06	12.93
whole 6 week old aboral regenerate · regenerate 8hpa	3	2	6.39	10.07
whole 6 week old aboral regenerate · regenerate 12hpa	3	1	3.03	9.10

Per sample · hover a bar for the full sample record · show / hide the sample table

SRA run	Condition	Tissue	Developmental stage	Treatment	Study	TPM
SRR6320836	whole 6 week old aboral regenerate · regenerate 96hpa	whole 6 week old aboral regenerate	six weeks	regenerate 96hpa	SRP125570	12.09
SRR6320837	whole 6 week old aboral regenerate · regenerate 96hpa	whole 6 week old aboral regenerate	six weeks	regenerate 96hpa	SRP125570	10.86
SRR6320863	whole 6 week old aboral regenerate · regenerate 96hpa	whole 6 week old aboral regenerate	six weeks	regenerate 96hpa	SRP125570	9.96
SRR6320847	whole 6 week old aboral regenerate · regenerate 144hpa	whole 6 week old aboral regenerate	six weeks	regenerate 144hpa	SRP125570	11.23
SRR6320838	whole 6 week old aboral regenerate · regenerate 144hpa	whole 6 week old aboral regenerate	six weeks	regenerate 144hpa	SRP125570	7.94
SRR6320841	whole 6 week old aboral regenerate · regenerate 144hpa	whole 6 week old aboral regenerate	six weeks	regenerate 144hpa	SRP125570	7.04
SRR6320846	whole 6 week old aboral regenerate · regenerate 0hpa	whole 6 week old aboral regenerate	six weeks	regenerate 0hpa	SRP125570	7.15
SRR6320839	whole 6 week old aboral regenerate · regenerate 0hpa	whole 6 week old aboral regenerate	six weeks	regenerate 0hpa	SRP125570	5.67
SRR6320840	whole 6 week old aboral regenerate · regenerate 0hpa	whole 6 week old aboral regenerate	six weeks	regenerate 0hpa	SRP125570	5.00
SRR6320861	whole 6 week old aboral regenerate · regenerate 2hpa	whole 6 week old aboral regenerate	six weeks	regenerate 2hpa	SRP125570	9.67
SRR6320842	whole 6 week old aboral regenerate · regenerate 2hpa	whole 6 week old aboral regenerate	six weeks	regenerate 2hpa	SRP125570	7.67
SRR6320848	whole 6 week old aboral regenerate · regenerate 2hpa	whole 6 week old aboral regenerate	six weeks	regenerate 2hpa	SRP125570	6.90
SRR6320843	whole 6 week old aboral regenerate · regenerate uncut	whole 6 week old aboral regenerate	six weeks	regenerate uncut	SRP125570	7.91
SRR6320844	whole 6 week old aboral regenerate · regenerate uncut	whole 6 week old aboral regenerate	six weeks	regenerate uncut	SRP125570	6.40
SRR6320845	whole 6 week old aboral regenerate · regenerate uncut	whole 6 week old aboral regenerate	six weeks	regenerate uncut	SRP125570	5.28
SRR6320872	whole 6 week old aboral regenerate · regenerate 4hpa	whole 6 week old aboral regenerate	six weeks	regenerate 4hpa	SRP125570	9.29
SRR6320849	whole 6 week old aboral regenerate · regenerate 4hpa	whole 6 week old aboral regenerate	six weeks	regenerate 4hpa	SRP125570	9.10
SRR6320873	whole 6 week old aboral regenerate · regenerate 4hpa	whole 6 week old aboral regenerate	six weeks	regenerate 4hpa	SRP125570	0.00
SRR6320882	whole 6 week old aboral regenerate · regenerate 120hpa	whole 6 week old aboral regenerate	six weeks	regenerate 120hpa	SRP125570	10.64
SRR6320883	whole 6 week old aboral regenerate · regenerate 120hpa	whole 6 week old aboral regenerate	six weeks	regenerate 120hpa	SRP125570	9.64
SRR6320850	whole 6 week old aboral regenerate · regenerate 120hpa	whole 6 week old aboral regenerate	six weeks	regenerate 120hpa	SRP125570	0.00
SRR6320851	whole 6 week old aboral regenerate · regenerate 36hpa	whole 6 week old aboral regenerate	six weeks	regenerate 36hpa	SRP125570	13.25
SRR6320855	whole 6 week old aboral regenerate · regenerate 36hpa	whole 6 week old aboral regenerate	six weeks	regenerate 36hpa	SRP125570	11.15
SRR6320852	whole 6 week old aboral regenerate · regenerate 36hpa	whole 6 week old aboral regenerate	six weeks	regenerate 36hpa	SRP125570	9.70
SRR6320854	whole 6 week old aboral regenerate · regenerate 24hpa	whole 6 week old aboral regenerate	six weeks	regenerate 24hpa	SRP125570	13.46
SRR6320853	whole 6 week old aboral regenerate · regenerate 24hpa	whole 6 week old aboral regenerate	six weeks	regenerate 24hpa	SRP125570	8.95
SRR6320856	whole 6 week old aboral regenerate · regenerate 24hpa	whole 6 week old aboral regenerate	six weeks	regenerate 24hpa	SRP125570	0.00
SRR6320857	whole 6 week old aboral regenerate · regenerate 20hpa	whole 6 week old aboral regenerate	six weeks	regenerate 20hpa	SRP125570	10.17
SRR6320860	whole 6 week old aboral regenerate · regenerate 20hpa	whole 6 week old aboral regenerate	six weeks	regenerate 20hpa	SRP125570	9.86
SRR6320859	whole 6 week old aboral regenerate · regenerate 20hpa	whole 6 week old aboral regenerate	six weeks	regenerate 20hpa	SRP125570	0.00
SRR6320880	whole 6 week old aboral regenerate · regenerate 16hpa	whole 6 week old aboral regenerate	six weeks	regenerate 16hpa	SRP125570	8.53
SRR6320881	whole 6 week old aboral regenerate · regenerate 16hpa	whole 6 week old aboral regenerate	six weeks	regenerate 16hpa	SRP125570	7.93
SRR6320858	whole 6 week old aboral regenerate · regenerate 16hpa	whole 6 week old aboral regenerate	six weeks	regenerate 16hpa	SRP125570	6.63
SRR6320862	whole 6 week old aboral regenerate · regenerate 72hpa	whole 6 week old aboral regenerate	six weeks	regenerate 72hpa	SRP125570	11.86
SRR6320865	whole 6 week old aboral regenerate · regenerate 72hpa	whole 6 week old aboral regenerate	six weeks	regenerate 72hpa	SRP125570	9.36
SRR6320864	whole 6 week old aboral regenerate · regenerate 72hpa	whole 6 week old aboral regenerate	six weeks	regenerate 72hpa	SRP125570	0.00
SRR6320866	whole 6 week old aboral regenerate · regenerate 60hpa	whole 6 week old aboral regenerate	six weeks	regenerate 60hpa	SRP125570	12.10
SRR6320867	whole 6 week old aboral regenerate · regenerate 60hpa	whole 6 week old aboral regenerate	six weeks	regenerate 60hpa	SRP125570	10.54
SRR6320869	whole 6 week old aboral regenerate · regenerate 60hpa	whole 6 week old aboral regenerate	six weeks	regenerate 60hpa	SRP125570	10.03
SRR6320870	whole 6 week old aboral regenerate · regenerate 48hpa	whole 6 week old aboral regenerate	six weeks	regenerate 48hpa	SRP125570	12.93
SRR6320871	whole 6 week old aboral regenerate · regenerate 48hpa	whole 6 week old aboral regenerate	six weeks	regenerate 48hpa	SRP125570	8.24
SRR6320868	whole 6 week old aboral regenerate · regenerate 48hpa	whole 6 week old aboral regenerate	six weeks	regenerate 48hpa	SRP125570	0.00
SRR6320875	whole 6 week old aboral regenerate · regenerate 8hpa	whole 6 week old aboral regenerate	six weeks	regenerate 8hpa	SRP125570	10.07
SRR6320874	whole 6 week old aboral regenerate · regenerate 8hpa	whole 6 week old aboral regenerate	six weeks	regenerate 8hpa	SRP125570	9.10
SRR6320876	whole 6 week old aboral regenerate · regenerate 8hpa	whole 6 week old aboral regenerate	six weeks	regenerate 8hpa	SRP125570	0.00
SRR6320877	whole 6 week old aboral regenerate · regenerate 12hpa	whole 6 week old aboral regenerate	six weeks	regenerate 12hpa	SRP125570	9.10
SRR6320878	whole 6 week old aboral regenerate · regenerate 12hpa	whole 6 week old aboral regenerate	six weeks	regenerate 12hpa	SRP125570	0.00
SRR6320879	whole 6 week old aboral regenerate · regenerate 12hpa	whole 6 week old aboral regenerate	six weeks	regenerate 12hpa	SRP125570	0.00

Source: CnidoSite RNA-seq expression matrices (NVECT_TPM, StringTie quantification over 48 runs), joined to SRA sample metadata. Samples whose tissue/treatment is not recorded in the source metadata are grouped by the descriptor carried in the expression matrix itself.