Gene detail

Detailed information of XP_048580726.1 in Nematostella vectensis

Genomic Location: NC_064036.1:19481877...19495755
NR annotation: XP_048580724.1, mitochondrial division protein 1 isoform X1 [Nematostella vectensis]

Gene Structure

More details in Jbrowse

Sequence

CDS

Transcript

rna-XM_048724769.1

cgcgggtaccctgtgtctAGTTCCAGCTCCCCTCTTTGGACGTGGCACAGATATGGCTGAATCCATCGCTCTCTCTACCGACATCAGAAAACTTCGAAAAAAGCTTAGACAAATTGAAAACCTGGAACAGCTGGAGAGAGAACTTTCAGACCAAGAATATGTGAAAAAATTGACAGTTTCTGCAAGACTGTGCTCAGAGTCTGATCTCCTGCAAAGATGACATACGGTCTGAGCTACAAAGGATGGTAGCGGGGCGTGATAAGCTGCAAAAAGAAGCAAAGAAAATGGCTGAATCtcttaaagtaaaaaaacatgaagtaTCTGAAGAAAAGCCCTCAACAAGTGATGCAGATAAAGGTGAAATTGGTGGTGCTATGATAGGTGTTCCACCTATATCAAGTCCAGGTCCTGGAAACCCAGGTGAAGATGTCCAGTCATCACTACAAGCATTAACATCAAAACATACATCAATaaagtcatcaccatcatcagcagactcatcatcatcatcgtcaacaATAGTGTCATCAGTGACAGCACCTgctacatcatcatcaacagcaGTAACTGCATCAACAACAGCAGGAGCAACAGTGAAAGAAGAACAGTTACCAAAAGTGACTTCATCACAGCCTATTTCTCAGCCAAGAAGCTCTTCAGTTTCACCCAAGCATTCAACTGTATGGAGAGATGCCAAATTCAGTGTGACTCTACTTGAGGGACATAACGATATGGTTTGTGCAGTGGACTGCTGGGAATCCCTCATCATCTCTGGAAGTCGGGATACCATGCTGAAGCTCTGGGACGGCGACACCGGACGTGAGATACGAAGCATGGGCGGTCACACAGGCACCGTGACTTCCGCTCGGCTCATACCATATATGGAGACTACATCAAACGATATCCCGTCCGTGTCAAGCCTGAGCCAGCACTTGGCCGTCACAGGGTCCAAGGACTGCTCTATTCGTCTGTGGTCCCTTAACGACGGTCAATTGAGGCGTTCCATCTACACGTTCTCGCCTGTGGAATGCCTCGACTATCACAAGGGCTGGACGGCGTCGGGATCCGAGGGCGGGAAGGTCGAGTTGTGGGATATGGACACAGGGGAAAACGTACGATCCATCACATGCTATGATGACCAAGTTACCGCCATAAAGTTTGAGGATGGGAGAATCATCAGCGGATCCGCATCTGGCATCGTCAAGATCTGGGATGTTCGGGACGGATCGCTAACGCCTGTATTCGACTCGAGCAAGGCAGAATTTTCCGAAGGAGTATCGATTAAGAGACGACACATTCGCTGCCTGGCGTCTTATGGTGACCGCGTGTACTGGGGCGACAGCGGTGTCAACATCAAAGCACTGGACATCAGCTCGGGGAGGGTCCGTAAGATTAGGAACCACTTGGATGACTTTGGCAGCACGAACGCCATGGTCGCGACAAGCACGTGCCTTGTCAGCGCAGGGTACGACATCGACCGCGGGAACAGCTACCTCAATGTGCGCAGTCTCCCTGGCGAGGAATACCTAGCCACCTTAGATGACGAAGACACGGGTTGTGTCACGTGTCTAGCCCGAAGTCACGTGACTCGTGAAGGAGCCACTCTACAGCGGTTGTGTACTGGGGGTGCAGAACTCAAATTATGGTCACAGCATCCGGCCGGAAGGATAAAAAAGCGAGCAAGGTCTGAGTCTATGGAACCATTTGTCGCGTCCAAACAAATCCGTCGCTACGGCCTCCCCGATCAGACGGACACGGAGAGCAGCGAAGACGAGAGCGACGACGAGTATGGTGGGACAGACGACGGAGATGACGCCGAGGACACCGAAGACACAGGAGCCGTAAAATCATGGTGTACCATTTGCTAGCAAGCGCGTATTGATTGAAAACTAAGATTAATCGATTGTGCGTCGGCTCAGCGAGTATTAGAAAGCTGTATAACAAACAGGAAGTTCGCAGCTTTAAACTACGAAGGCTTTTTTAATGTACGAAGCGGCATGCAGAAGTTGGGATAACACAGGATGCCCGGGAATGGAAAATAAATCTAATTTCTGGTGAAAAGAAAAGGCAGGTTGAAAAGGGGTAATTTCTTCGGGAAATCATCTACCacttttcgtttttttttatttttgagaTATATATGCGTTTGAAACAACGctgatttttgtttaaatcgttgcaaataattaacaattttttttaaaaattaaaaaaagtgcgaAGAAAATTGAAGCCAGACGAAAGAGTTTGGACATGTGCGAGATATGACTGTGAGCATTCCCACATGACATAAGTTATCTTTGAACGTGTTTCAAACACTGTGGTGTGACATAAGTAATCTTTGAACGTGTTTCAAACACTGTGGTGTGACATAAGTTATCTTTGAACGTGTTTCAAACACTGTGGTGTGACACTTGTAAGAAATGTTTGTATATAGTATGACATCATTAAGAGAAGTTCAATCGAGATCTATTATAGAATATTATAAACATTAAATTTATTACTCTCTTC

Protein

Uniprot

Gene family

Uniprot term	Description
P36130	CCR4-associated factor 4 OS=Saccharomyces cerevisiae (strain ATCC 204508 / S288c) OX=559292 GN=CAF4 PE=1 SV=3
A6ZZZ8	CCR4-associated factor 4 OS=Saccharomyces cerevisiae (strain YJM789) OX=307796 GN=CAF4 PE=3 SV=2

Gene family	Subfamily
Ubiquitin Family	UBD\|Other\|Beta-prp
Ubiquitin Family	E3\|E3 adaptor Cullin RING\|CDC20
Ubiquitin Family	E3\|E3 adaptor Cullin RING\|DWD

Pfam domain

Pfam accession	Pfam name	Description	Type	Source
PF00400	WD40	WD domain, G-beta repeat	Repeat	Interproscan

InterPro

InterPro term	Type	Description	Source
IPR001680	Repeat	WD40 repeat	Interproscan
IPR036322	Homologous_superfamily	WD40-repeat-containing domain superfamily	Interproscan
IPR020472	Repeat	G-protein beta WD-40 repeat	Interproscan
IPR015943	Homologous_superfamily	WD40/YVTN repeat-like-containing domain superfamily	Interproscan

PANTHER

PANTHER term	Description	Source
PTHR19849	PHOSPHOLIPASE A-2-ACTIVATING PROTEIN	Interproscan

Gene Ontology

GO terms	Category	Description	Source
GO:0005515	Molecular Function	protein binding	Interproscan