Gene detail

Detailed information of XP_048581002.1 in Nematostella vectensis

Genomic Location: NC_064036.1:17998792...18017194
NR annotation: XP_048581002.1, DNA-binding protein SMUBP-2 isoform X1 [Nematostella vectensis]
Species Nematostella vectensis · all data for this species · gene families

Gene Structure

More details in JBrowse

Sequence

CDS

LOC5509393

ATGGAGGACGTAGAGAAATTCGCGAAGAAGACTTTAGCATTGCTTAGTATCGAGCGAAAAGCTGAGGTTGACGAAGCCAGGGCCTTTCAAACAAACATCAGTCCGGCGGAGCTTCAAAAGCGAGGGGTGTGCGTCCTCAAGCTATCAATAAGGAATAGATGTACGGGGTTATATGGCCGGAGTCTGCTAACGTTCGAGAGATTAAGGCCGGGTGGCGATAATAAGCTGCCTTCTCACCGTATTACCACCGGAGATATTGTTGGTGTGAGTGCCTCTGGCAAAAGTGCAATTGCAGAAGAACTATGTTCAGGAATAGTGACTCGTGTCACTGACAATGGGATAACAGTTGCATTTGATGATGCTGTTGACACTGATGAGATCGACGATGATGGCCTATATAGACTTAGCAAGCTGGCTAATGATGTCACATACAAAAGAATTAAATGTGCGATGGGTGAACTAACAAAGTATAGGAGTGGCAGAGCCTCGCATCTAATAGATGTCCTGTTTGGACGGGTTTCAATGGGCTGTCCATTGCAATCCATATATTTTGGCAATGAAGATGAGATGGAACTGTTTAACACTTCACTGGACCTTTCTCAGAGAGAAGCAGTCGGTTTTGCCCTGCGGCAGCCAGAGGTAGCTGTCATCCATGGCCCACCTGGGACAGGCAAGACAACAACAGTGGTAGAAATTATACTCCAGGCGACCAAGAAATGTGGAATGAAGGTTCTTGCTTGTGCTCCTTCAAATATTGCTGTTGATAACTTGGTTGAAAAGCTGGCCAGAAGTAAGGCAAAGGTTGTTCGTCTTGGTCATCCTGCCCGCCTGCTGAAGGACATACAGCAGCACTCTTTAGATGCCATTCTTTCATCATCCAGTTCAACCGCCATCGTTCAAGACGTTCGACGGGACATTGATCTCACCATGAAAAAATCATGCAAGTCAAAACCCGCAGAGAGAAGACAACTACGACAGGAGATAAAAGTGCTCAGAAAAGAACTTAGAGACAGAGAAGAAAAAGCAATGCGAGAGATATTGACAGGTGTCGAGGTTGTCTTGGCAACCAATACCAGTGCCGGAGATACCGGGCCCTTGGGGCTTTTAAAGGAAGATCATTTTGACCTGGTGGTCATTGACGAGGCTGCACAGGCACTAGAGGCAAGTTGCTGGATACCTCTACTACGAGCACCAAGGTGTATTCTGGCAGGAGACCATCATCAGCTTCCTCCTACCATCATCTCCCCTAAAGCTGCCAAGGATGGCCTTGAGGTGACTCTGATGGAGAGAGTGGTACATCAGCTTGGAGAGAAAGTTGTGCACATGCTCACCACCCAATACAGAATGCACGAGGCGATTATGAAGTGGTCTTCAGACCAATTGTACAACGGTCGTCTCGATGCCCATGTGTCTGTAGCCACTCACTTGCTTTGCGATCTTCCAAACATCCGCAATACTGACGAGACACGCCTACCGCTCCTGATGATTGACACCGCTGGATGTGATGTCTTGGAGATGGAGGTGGAAGATGAGTTGTCTAAAGGAAATGAGGGCGAGGCTGATATTGTAACCGCTCATGTCACTGCGCTGATTGACGCTGGCTTGAACCCGCGCGATATTGCTGTAATAGCTCCATACAATTTGCAGGTTGAGCTGTTGCGTCAGCGCCTCTCCCCCTCACACCCTGCGGTGGAGGTCAAGTCTGTTGATGGGTTTCAGGGCAGAGAGAAAGAAGCCGTCATCCTGTCACTTGTCCGCTCCAACTCTAGAGGTGAGGTTGGCTTCCTGGCGGAAGATCGGCGGATTAACGTGGCGATCACACGGGCCAGGCGTCATCTGGCCATCATCTGTGACTCGGAGACCGTGAGCCACCACCCCTTCCTGCGCTCCCTTGTAGATTACATGTCTGAGAAAGGCGAGGTGCGGTCAGCAGTAGACTACCTGACGGACCATGTGACGGCTGACGCGGAGTCCCTTCAAACAGACCCCTCTATACTACTGCGTGGCGGCGACGTATTTAGCCTTCCAGTAACCAGAGTAAAAGATGAAGCAGTCTTACTAGAGACATCGAAGTCAGCTCGTTGTAAGAGAAACCCGCTTAGTAAAGCCCAGTCTCCTGCTCTCCAACCGCAAACCGCTGTTCAACACGATAGTGGGCTTTCCCATGATGCTTCAGTACATCTGTGCAATGCCGGCCGGTACAGTGCCATTGACAAAGTGACTGGGGTAGACCTCGGCAGGCCTCGTGTAGATGATGACCGTAAAGCTGAGAAGCGAGCAGCGCTACAGGAGCGGGTCCAGACTTTCATGACTGACAGTAAGAGAAACGTACTGGAGTTCCCTGCGTCGTTTAGCGACCAGCAGCGGTTTATGGTGCATTCGATTGCTGAGGACTTTGGCCTTGAGCACGAGAGTAGAGGCGAAGGCAAGGAAAGGTACATCACAATCCGCAAGCCTGCCAAGAACACGCCAACAACTCAAGAACCACCACACAACGACAATGATATGTTAAGAACATGTCCCTTGTGCAAAAAACTCATCCCTACCACCAACCTGAGCTTGCATACTCTACACTGCGAACAGAAGCAAAGAGCATGCGCACAAGACGGTCAGCCACAGGTATGCGCCGAAACCTCTCGTCTCAAAGAATCAAAGGAAACTAGACGAAAACCGAAAAAGAAAGCGGCGAATTCGGGCGGTGAAAACGAGGAAGGTTTTGAAGCATTGCTTGCTACTTTTTCAAAGTTAGACACGAGATGTGCGTTTGAGTCTTGTAAACAAAATATCTCGCTGTTGGGACAAAAGTGCGTTTGTTGTACGCGGGTATTTTGCTTATCACATCATATACCGGAAGTCCACGGGTGCGGCAAAGACGCCAAGATTCGCGCAAGACACCAGTTGGCGCATGCTCCGCCGCGAAAACCGCAACGTGCGGACATGACACGGAAGGCTCATCTTCAGCGGAAATTGGATACCAAACTGGACGAGATGGCGAGCGGAAGAAAGTCGAAAAAGAAAGAGTCAAAGAAATAA

Transcript

rna-XM_048725045.1

CTTTTCCCTAAAGAACAACAAATCCAAGATGGAGGACGTAGAGAAATTCGCGAAGAAGACTTTAGCATTGCTTAGTATCGAGCGAAAAGCTGAGGTTGACGAAGCCAGGGCCTTTCAAACAAACATCAGTCCGGCGGAGCTTCAAAAGCGAGGGGTGTGCGTCCTCAAGCTATCAATAAGGAATAGATGTACGGGGTTATATGGCCGGAGTCTGCTAACGTTCGAGAGATTAAGGCCGGGTGGCGATAATAAGCTGCCTTCTCACCGTATTACCACCGGAGATATTGTTGGTGTGAGTGCCTCTGGCAAAAGTGCAATTGCAGAAGAACTATGTTCAGGAATAGTGACTCGTGTCACTGACAATGGGATAACAGTTGCATTTGATGATGCTGTTGACACTGATGAGATCGACGATGATGGCCTATATAGACTTAGCAAGCTGGCTAATGATGTCACATACAAAAGAATTAAATGTGCGATGGGTGAACTAACAAAGTATAGGAGTGGCAGAGCCTCGCATCTAATAGATGTCCTGTTTGGACGGGTTTCAATGGGCTGTCCATTGCAATCCATATATTTTGGCAATGAAGATGAGATGGAACTGTTTAACACTTCACTGGACCTTTCTCAGAGAGAAGCAGTCGGTTTTGCCCTGCGGCAGCCAGAGGTAGCTGTCATCCATGGCCCACCTGGGACAGGCAAGACAACAACAGTGGTAGAAATTATACTCCAGGCGACCAAGAAATGTGGAATGAAGGTTCTTGCTTGTGCTCCTTCAAATATTGCTGTTGATAACTTGGTTGAAAAGCTGGCCAGAAGTAAGGCAAAGGTTGTTCGTCTTGGTCATCCTGCCCGCCTGCTGAAGGACATACAGCAGCACTCTTTAGATGCCATTCTTTCATCATCCAGTTCAACCGCCATCGTTCAAGACGTTCGACGGGACATTGATCTCACCATGAAAAAATCATGCAAGTCAAAACCCGCAGAGAGAAGACAACTACGACAGGAGATAAAAGTGCTCAGAAAAGAACTTAGAGACAGAGAAGAAAAAGCAATGCGAGAGATATTGACAGGTGTCGAGGTTGTCTTGGCAACCAATACCAGTGCCGGAGATACCGGGCCCTTGGGGCTTTTAAAGGAAGATCATTTTGACCTGGTGGTCATTGACGAGGCTGCACAGGCACTAGAGGCAAGTTGCTGGATACCTCTACTACGAGCACCAAGGTGTATTCTGGCAGGAGACCATCATCAGCTTCCTCCTACCATCATCTCCCCTAAAGCTGCCAAGGATGGCCTTGAGGTGACTCTGATGGAGAGAGTGGTACATCAGCTTGGAGAGAAAGTTGTGCACATGCTCACCACCCAATACAGAATGCACGAGGCGATTATGAAGTGGTCTTCAGACCAATTGTACAACGGTCGTCTCGATGCCCATGTGTCTGTAGCCACTCACTTGCTTTGCGATCTTCCAAACATCCGCAATACTGACGAGACACGCCTACCGCTCCTGATGATTGACACCGCTGGATGTGATGTCTTGGAGATGGAGGTGGAAGATGAGTTGTCTAAAGGAAATGAGGGCGAGGCTGATATTGTAACCGCTCATGTCACTGCGCTGATTGACGCTGGCTTGAACCCGCGCGATATTGCTGTAATAGCTCCATACAATTTGCAGGTTGAGCTGTTGCGTCAGCGCCTCTCCCCCTCACACCCTGCGGTGGAGGTCAAGTCTGTTGATGGGTTTCAGGGCAGAGAGAAAGAAGCCGTCATCCTGTCACTTGTCCGCTCCAACTCTAGAGGTGAGGTTGGCTTCCTGGCGGAAGATCGGCGGATTAACGTGGCGATCACACGGGCCAGGCGTCATCTGGCCATCATCTGTGACTCGGAGACCGTGAGCCACCACCCCTTCCTGCGCTCCCTTGTAGATTACATGTCTGAGAAAGGCGAGGTGCGGTCAGCAGTAGACTACCTGACGGACCATGTGACGGCTGACGCGGAGTCCCTTCAAACAGACCCCTCTATACTACTGCGTGGCGGCGACGTATTTAGCCTTCCAGTAACCAGAGTAAAAGATGAAGCAGTCTTACTAGAGACATCGAAGTCAGCTCGTTGTAAGAGAAACCCGCTTAGTAAAGCCCAGTCTCCTGCTCTCCAACCGCAAACCGCTGTTCAACACGATAGTGggctttcccatgatgcttcAGTACATCTGTGCAATGCCGGCCGGTACAGTGCCATTGACAAAGTGACTGGGGTAGACCTCGGCAGGCCTCGTGTAGATGATGACCGTAAAGCTGAGAAGCGAGCAGCGCTACAGGAGCGGGTCCAGACTTTCATGACTGACAGTAAGAGAAACGTACTGGAGTTCCCTGCGTCGTTTAGCGACCAGCAGCGGTTTATGGTGCATTCGATTGCTGAGGACTTTGGCCTTGAGCACGAGAGTAGAGGCGAAGGCAAGGAAAGGTACATCACAATCCGCAAGCCTGCCAAGAACACGCCAACAACTCAAGAACCACCACACAACGACAATGATATGTTAAGAACATGTCCCTTGTGCAAAAAACTCATCCCTACCACCAACCTGAGCTTGCATACTCTACACTGCGAACAGAAGCAAAGAGCATGCGCACAAGACGGTCAGCCACAGGTATGCGCCGAAACCTCTCGTCTCAAAGAATCAAAGGAAACTAGACGAAAACCGAAAAAGAAAGCGGCGAATTCGGGCGGTGAAAACGAGGAAGGTTTTGAAGCATTGCTTGCTACTTTTtcaaagttagacacgagATGTGCGTTTGAGTCTTGTAAACAAAATATCTCGCTGTTGGGACAAAAGTGCGTTTGTTGTACGCGGGTATTTTGCTTATCACATCATATACCGGAAGTCCACGGGTGCGGCAAAGACGCCAAGATTCGCGCAAGACACCAGTTGGCGCATGCTCCGCCGCGAAAACCGCAACGTGCGGACATGACACGGAAGGCTCATCTTCAGCGGAAATTGGATACCAAACTGGACGAGATGGCGAGCGGAAGAAAGTCGAAAAAGAAAGAGTCAAAGAAATAATTTCCATACCGTGTTTTCaccttaaataaaaaaattcaaaacaaaaacaatagagAAACACAAAATAATCCAATATATCCAACAAAAGAAATTGTTTATTGTCAAATTTCGAGATTTTTCCCCAAGAGAACTTTGGAGAACTTTTGGGATGTTGTTAAGAATGTTTTTCTTATCATATTTAgggtatttatatttaggTGTATTGTACCCCTACCATTCGAAGTAGAGTACGGTTATTGCACCCCTAAAATACGGAGTACGGTTATGGCACCCCTACTATTTGAAGTAGAGTACGGTTATTGCACCCCTACTATTCGAAGTAGAGTACGGTTATTGCACCCCTACCATTCGAACTAGAGTACGGTTATTGCACCCCTACCATTCGAAGTAGAATACGGTTATTGCACCCCTAAAATACGGAGTACGGTTATTGCACCCCTACGATTCGAAGTAGAATACGGTTATTGCACCACATCGAATCCTGCAGGTGCAACTTATTATGCAGATTACGGCTGTTAAATGTTTAATCGTCACAGATGTCACATTGCTATCTCGGAAAGCATTGAGAGGTTGTAAAGGTTTGTCTTATTGCCGCGTCTATAACAGGTAAATATCAAACTGTAAAATGACTTACTGGTTTGAAATCTTAAAGGTTAAAAAAATAGCTACAACCATATTTTTCAAGTTAAAGTTTTAACATTTAGTGTTTTTGTGTctttaagttttatttatttattgttgcGTAATTAACCGATTCAAACCAAAACTTAACCGAATTTTTTTCCTTACATTTCTGGCGTATTCAAATTGCCGATAAGTTAAAACGGTTTCACCAAACTCAACTCCTGCCGTTAGATCTAGAAGGAGAAAAATGACagcatgaaataaaaacagccTCCCTCTCAAAA

Protein

UniProt (Swiss-Prot top hit)

UniProt accession	Description
P38935	DNA-binding protein SMUBP-2 OS=Homo sapiens OX=9606 GN=IGHMBP2 PE=1 SV=3
Q9EQN5	DNA-binding protein SMUBP-2 OS=Rattus norvegicus OX=10116 GN=Ighmbp2 PE=1 SV=1
Q60560	DNA-binding protein SMUBP-2 OS=Mesocricetus auratus OX=10036 GN=IGHMBP2 PE=1 SV=1

Gene family

Family type	Membership / link
Orthogroup (gene family)	OG0004138 (this species only)

Pfam domain

Pfam accession	Pfam name	Description	Type	Source
PF13087 all species →	AAA_12	AAA domain	Domain	Interproscan
PF01428 all species →	zf-AN1	AN1-like Zinc finger	Family	Interproscan
PF21138 all species →	SMUBP-2_HCS1_1B	Helicase SMUBP-2/HCS1, 1B domain	Domain	Interproscan
PF13086 all species →	AAA_11	AAA domain	Domain	Interproscan
PF01424 all species →	R3H	R3H domain	Domain	Interproscan

InterPro

InterPro term	Type	Description	Source
IPR036867 all species →	Homologous_superfamily	R3H domain superfamily	Interproscan
IPR027417 all species →	Homologous_superfamily	P-loop containing nucleoside triphosphate hydrolase	Interproscan
IPR035896 all species →	Homologous_superfamily	AN1-like Zinc finger	Interproscan
IPR004483 all species →	Family	Helicase SMUBP-2/Hcs1-like	Interproscan
IPR041679 all species →	Domain	DNA2/NAM7 helicase-like, C-terminal	Interproscan
IPR047187 all species →	Domain	Upf1-like, C-terminal helicase domain	Interproscan
IPR000058 all species →	Domain	Zinc finger, AN1-type	Interproscan
IPR048761 all species →	Domain	Helicase SMUBP-2/HCS1, 1B domain	Interproscan
IPR050534 all species →	Family	Coronaviruses polyprotein 1ab	Interproscan
IPR041677 all species →	Domain	DNA2/NAM7 helicase, helicase domain	Interproscan
IPR001374 all species →	Domain	R3H domain	Interproscan
IPR003593 all species →	Domain	AAA+ ATPase domain	Interproscan
IPR014001 all species →	Domain	Helicase superfamily 1/2, ATP-binding domain	Interproscan

PANTHER

PANTHER term	Description	Source
PTHR43788 all species →	DNA2/NAM7 HELICASE FAMILY MEMBER	Interproscan

Gene Ontology

GO term	Category	Description	Source
GO:0003676 all species →	Molecular Function	nucleic acid binding	Interproscan
GO:0003677 all species →	Molecular Function	DNA binding	Interproscan
GO:0005524 all species →	Molecular Function	ATP binding	Interproscan
GO:0008270 all species →	Molecular Function	zinc ion binding	Interproscan
GO:0003723 all species →	Molecular Function	RNA binding	Interproscan
GO:0005634 all species →	Cellular Component	nucleus	Interproscan
GO:0005737 all species →	Cellular Component	cytoplasm	Interproscan
GO:0043139 all species →	Molecular Function	5'-3' DNA helicase activity	Interproscan
GO:0004386 all species →	Molecular Function	helicase activity	Interproscan
GO:0016887 all species →	Molecular Function	ATP hydrolysis activity	Interproscan

Search by domain instead of by gene. Any accession above (InterPro, Pfam, PANTHER, GO, KEGG) can be used as a query on the Functional Domain Search page, which searches all 148 annotated genomes at once.

KEGG pathway

KO	Enzyme	Enzyme ID	Pathway	Map ID	Source
K19036	IGHMBP2; ATP-dependent RNA/DNA helicase IGHMBP2	EC:5.6.2.5 EC:5.6.2.3	Translation factors	ko03012	deepkoala

Searching by KO or pathway ID across all species is available on the KEGG Pathway page.

Expression pattern (RNA-seq)

Transcript abundance of XP_048581002.1 across 48 RNA-seq samples of Nematostella vectensis. Values are TPM (transcripts per million) from the StringTie quantification; one bar is one sample, grouped and coloured by condition, sorted by expression within each group.

48Samples

35TPM > 0

16Conditions

3.0Max TPM

1.6Mean TPM

By condition

Condition	Samples	TPM > 0	Mean TPM	Max TPM
whole 6 week old aboral regenerate · regenerate 96hpa	3	1	0.81	2.43
whole 6 week old aboral regenerate · regenerate 144hpa	3	3	1.92	2.53
whole 6 week old aboral regenerate · regenerate 0hpa	3	3	1.56	1.84
whole 6 week old aboral regenerate · regenerate 2hpa	3	3	2.26	2.84
whole 6 week old aboral regenerate · regenerate uncut	3	3	1.63	2.15
whole 6 week old aboral regenerate · regenerate 4hpa	3	1	0.93	2.78
whole 6 week old aboral regenerate · regenerate 120hpa	3	2	1.62	2.81
whole 6 week old aboral regenerate · regenerate 36hpa	3	3	2.45	2.81
whole 6 week old aboral regenerate · regenerate 24hpa	3	2	1.54	2.50
whole 6 week old aboral regenerate · regenerate 20hpa	3	3	2.38	2.81
whole 6 week old aboral regenerate · regenerate 16hpa	3	3	1.46	1.87
whole 6 week old aboral regenerate · regenerate 72hpa	3	2	1.81	2.98
whole 6 week old aboral regenerate · regenerate 60hpa	3	2	1.61	2.45
whole 6 week old aboral regenerate · regenerate 48hpa	3	1	0.88	2.65
whole 6 week old aboral regenerate · regenerate 8hpa	3	2	1.80	2.98
whole 6 week old aboral regenerate · regenerate 12hpa	3	1	0.55	1.64

Per sample · hover a bar for the full sample record · show / hide the sample table

SRA run	Condition	Tissue	Developmental stage	Treatment	Study	TPM
SRR6320836	whole 6 week old aboral regenerate · regenerate 96hpa	whole 6 week old aboral regenerate	six weeks	regenerate 96hpa	SRP125570	2.43
SRR6320837	whole 6 week old aboral regenerate · regenerate 96hpa	whole 6 week old aboral regenerate	six weeks	regenerate 96hpa	SRP125570	0.00
SRR6320863	whole 6 week old aboral regenerate · regenerate 96hpa	whole 6 week old aboral regenerate	six weeks	regenerate 96hpa	SRP125570	0.00
SRR6320847	whole 6 week old aboral regenerate · regenerate 144hpa	whole 6 week old aboral regenerate	six weeks	regenerate 144hpa	SRP125570	2.53
SRR6320841	whole 6 week old aboral regenerate · regenerate 144hpa	whole 6 week old aboral regenerate	six weeks	regenerate 144hpa	SRP125570	1.70
SRR6320838	whole 6 week old aboral regenerate · regenerate 144hpa	whole 6 week old aboral regenerate	six weeks	regenerate 144hpa	SRP125570	1.54
SRR6320846	whole 6 week old aboral regenerate · regenerate 0hpa	whole 6 week old aboral regenerate	six weeks	regenerate 0hpa	SRP125570	1.84
SRR6320839	whole 6 week old aboral regenerate · regenerate 0hpa	whole 6 week old aboral regenerate	six weeks	regenerate 0hpa	SRP125570	1.50
SRR6320840	whole 6 week old aboral regenerate · regenerate 0hpa	whole 6 week old aboral regenerate	six weeks	regenerate 0hpa	SRP125570	1.34
SRR6320861	whole 6 week old aboral regenerate · regenerate 2hpa	whole 6 week old aboral regenerate	six weeks	regenerate 2hpa	SRP125570	2.84
SRR6320842	whole 6 week old aboral regenerate · regenerate 2hpa	whole 6 week old aboral regenerate	six weeks	regenerate 2hpa	SRP125570	2.55
SRR6320848	whole 6 week old aboral regenerate · regenerate 2hpa	whole 6 week old aboral regenerate	six weeks	regenerate 2hpa	SRP125570	1.38
SRR6320844	whole 6 week old aboral regenerate · regenerate uncut	whole 6 week old aboral regenerate	six weeks	regenerate uncut	SRP125570	2.15
SRR6320843	whole 6 week old aboral regenerate · regenerate uncut	whole 6 week old aboral regenerate	six weeks	regenerate uncut	SRP125570	1.62
SRR6320845	whole 6 week old aboral regenerate · regenerate uncut	whole 6 week old aboral regenerate	six weeks	regenerate uncut	SRP125570	1.12
SRR6320872	whole 6 week old aboral regenerate · regenerate 4hpa	whole 6 week old aboral regenerate	six weeks	regenerate 4hpa	SRP125570	2.78
SRR6320849	whole 6 week old aboral regenerate · regenerate 4hpa	whole 6 week old aboral regenerate	six weeks	regenerate 4hpa	SRP125570	0.00
SRR6320873	whole 6 week old aboral regenerate · regenerate 4hpa	whole 6 week old aboral regenerate	six weeks	regenerate 4hpa	SRP125570	0.00
SRR6320882	whole 6 week old aboral regenerate · regenerate 120hpa	whole 6 week old aboral regenerate	six weeks	regenerate 120hpa	SRP125570	2.81
SRR6320883	whole 6 week old aboral regenerate · regenerate 120hpa	whole 6 week old aboral regenerate	six weeks	regenerate 120hpa	SRP125570	2.06
SRR6320850	whole 6 week old aboral regenerate · regenerate 120hpa	whole 6 week old aboral regenerate	six weeks	regenerate 120hpa	SRP125570	0.00
SRR6320855	whole 6 week old aboral regenerate · regenerate 36hpa	whole 6 week old aboral regenerate	six weeks	regenerate 36hpa	SRP125570	2.81
SRR6320852	whole 6 week old aboral regenerate · regenerate 36hpa	whole 6 week old aboral regenerate	six weeks	regenerate 36hpa	SRP125570	2.37
SRR6320851	whole 6 week old aboral regenerate · regenerate 36hpa	whole 6 week old aboral regenerate	six weeks	regenerate 36hpa	SRP125570	2.17
SRR6320854	whole 6 week old aboral regenerate · regenerate 24hpa	whole 6 week old aboral regenerate	six weeks	regenerate 24hpa	SRP125570	2.50
SRR6320853	whole 6 week old aboral regenerate · regenerate 24hpa	whole 6 week old aboral regenerate	six weeks	regenerate 24hpa	SRP125570	2.11
SRR6320856	whole 6 week old aboral regenerate · regenerate 24hpa	whole 6 week old aboral regenerate	six weeks	regenerate 24hpa	SRP125570	0.00
SRR6320859	whole 6 week old aboral regenerate · regenerate 20hpa	whole 6 week old aboral regenerate	six weeks	regenerate 20hpa	SRP125570	2.81
SRR6320860	whole 6 week old aboral regenerate · regenerate 20hpa	whole 6 week old aboral regenerate	six weeks	regenerate 20hpa	SRP125570	2.17
SRR6320857	whole 6 week old aboral regenerate · regenerate 20hpa	whole 6 week old aboral regenerate	six weeks	regenerate 20hpa	SRP125570	2.14
SRR6320880	whole 6 week old aboral regenerate · regenerate 16hpa	whole 6 week old aboral regenerate	six weeks	regenerate 16hpa	SRP125570	1.87
SRR6320881	whole 6 week old aboral regenerate · regenerate 16hpa	whole 6 week old aboral regenerate	six weeks	regenerate 16hpa	SRP125570	1.47
SRR6320858	whole 6 week old aboral regenerate · regenerate 16hpa	whole 6 week old aboral regenerate	six weeks	regenerate 16hpa	SRP125570	1.04
SRR6320862	whole 6 week old aboral regenerate · regenerate 72hpa	whole 6 week old aboral regenerate	six weeks	regenerate 72hpa	SRP125570	2.98
SRR6320865	whole 6 week old aboral regenerate · regenerate 72hpa	whole 6 week old aboral regenerate	six weeks	regenerate 72hpa	SRP125570	2.46
SRR6320864	whole 6 week old aboral regenerate · regenerate 72hpa	whole 6 week old aboral regenerate	six weeks	regenerate 72hpa	SRP125570	0.00
SRR6320867	whole 6 week old aboral regenerate · regenerate 60hpa	whole 6 week old aboral regenerate	six weeks	regenerate 60hpa	SRP125570	2.45
SRR6320866	whole 6 week old aboral regenerate · regenerate 60hpa	whole 6 week old aboral regenerate	six weeks	regenerate 60hpa	SRP125570	2.37
SRR6320869	whole 6 week old aboral regenerate · regenerate 60hpa	whole 6 week old aboral regenerate	six weeks	regenerate 60hpa	SRP125570	0.00
SRR6320870	whole 6 week old aboral regenerate · regenerate 48hpa	whole 6 week old aboral regenerate	six weeks	regenerate 48hpa	SRP125570	2.65
SRR6320868	whole 6 week old aboral regenerate · regenerate 48hpa	whole 6 week old aboral regenerate	six weeks	regenerate 48hpa	SRP125570	0.00
SRR6320871	whole 6 week old aboral regenerate · regenerate 48hpa	whole 6 week old aboral regenerate	six weeks	regenerate 48hpa	SRP125570	0.00
SRR6320874	whole 6 week old aboral regenerate · regenerate 8hpa	whole 6 week old aboral regenerate	six weeks	regenerate 8hpa	SRP125570	2.98
SRR6320875	whole 6 week old aboral regenerate · regenerate 8hpa	whole 6 week old aboral regenerate	six weeks	regenerate 8hpa	SRP125570	2.43
SRR6320876	whole 6 week old aboral regenerate · regenerate 8hpa	whole 6 week old aboral regenerate	six weeks	regenerate 8hpa	SRP125570	0.00
SRR6320877	whole 6 week old aboral regenerate · regenerate 12hpa	whole 6 week old aboral regenerate	six weeks	regenerate 12hpa	SRP125570	1.64
SRR6320878	whole 6 week old aboral regenerate · regenerate 12hpa	whole 6 week old aboral regenerate	six weeks	regenerate 12hpa	SRP125570	0.00
SRR6320879	whole 6 week old aboral regenerate · regenerate 12hpa	whole 6 week old aboral regenerate	six weeks	regenerate 12hpa	SRP125570	0.00

Source: CnidoSite RNA-seq expression matrices (NVECT_TPM, StringTie quantification over 48 runs), joined to SRA sample metadata. Samples whose tissue/treatment is not recorded in the source metadata are grouped by the descriptor carried in the expression matrix itself.