Gene detail

Detailed information of XP_048582026.1 in Nematostella vectensis

Genomic Location: NC_064037.1:10705380...10715201
NR annotation: XP_048582026.1, mediator of RNA polymerase II transcription subunit 15 isoform X1 [Nematostella vectensis]

Gene Structure

More details in Jbrowse

Sequence

CDS

LOC5513687

ATGCGAAAGCCTGTGGTTTCCAATATGGAGGAGAACTGGTATCTACATTTCATTCTAAACAATATGGCGGCTCCTGCAGACGAAGAATGGCGAGCGCCACAATTTCGCCGAAAAGTCACCACACAAATAGATGCCGCTCTTAAGGAGTCTGGGAACCCCCAAATGATGACTAAGAACGCTGAGGAAATCGAAAAAGATGTGTTTTCTAAAGCCAAATCAAGGGATGAATACATGAATTATGTGGCCAAGCTTCTGGTCTATGCGAGAGATGTTGGAGGTCAAAGCCATTTGCCACGAGGCCAGCAACAAGGAATACGCATGCCTGTAAAAGTCCAGATGACCCAACAGCAGATGGTGCAGCAGATGGCGCAACCCACAGGCCAACCAAACACGAACGTCACTGGCTCTCAGTACCAGGTCAAACACCAAATGGCATTTAGAAACGTCCAGCCTGGTACCTTGGTCCAACAACAACAACAACAGCAGCAGCAGCAGCAGCAACTGCAACAACAGCAATTGCAACAACAGCAATTGCAACAACATCAACAACTGCAACAACAGCAACAACTGCAACAACAACAACAACTGCAACAACAACAACAGCAGCAACAACTGCAACAACAACAACAGCAGCAACAACAACAACAACAACTGCAACAACAGTTGTCACAAATGACTCCACAACAACAACAGCAATATGTCATGTCACAGATAGCTGCATCACAACAACAACAGCTGCGTGCCCAGCAACAGGCTGCTTTGGCAGCACAGCAAGCTCACTCACAGCCAGCAGTCTCCCTACCTCAACCCCACCCTTCTCCTCAAATGCCGTCACCAGCTCAGTTAGGGGCCCAATCCCATCCAGGTTCAGTTTCTCAGCAGATGCATGCAGCTCAAACCCGAATGCAGTATGTCCAGTCCCCTGCTGTCATGCGTGCCCCGACTCCAGCACCCCACCCCTCCCCGGCTAGTCAACCTGTAGCCCCTTCCCCTGTATGCATCCCTGTCCAGTCGCCAGCACCGAACATGATGAGCCCCTCACCCCAGCAGTTCATAGCACAGTCCCCAGCACCAACTTCAGTTCCAACACCAGGCACTTTAAACGTCCAGTCACCAGCATCGATCCTAAACCCTGGGTCGGTGGGGCCCTCAGTTACCAGCCCTGCCCCACTCAGCGCCGCCGAGGAACAAGCCTATCTTGAAAAGCATAGACAACTGTCCATCTACATTGAGCCCCTGACAAGGATGATTAACAAAATGAACAGAGAAAAAGAGCACAGCGGGAATGACCTGAAAAAGCTGAAAACCTTCTTGGATATTTTGACGAATCCATCTAAACGACTACAACTTGGAGTTCTCGAGAAGTGTGAACTTGTCCTGAAGAAGATGAACCTTAAACCTGTTACACCCCGAAGTCAAGTGACAACATCCCCTACAACTTCCGTGTCAGCAGCATCAACTACAACAGCTGCACCTTCGGCACGCTTCGTGGAGGACCTTGCCCAACAGATCACGGGACACGGGCTTCTAGACACGGTAGCCAGGAACCTCGGCTCACCTAACTTTTCTCACACACTAAAAAGGACATTTACACCTATCCTACAAGCCATGGAGGGACCTCCTATTTGCCCTCCGCCCCCGCCGAGCAAGAAGCTCAAGCTGAGAGATGACAATCAGAACAAGTGCCCGCTACCTCATGCACTACAAGGCGAGCTCGCACGTCTGTGCAGTCGCTTCACTGTCAAACCCGACCTTGCGGGCGCCTCTCGACAAAGCTCCACCCTGCTAAGGTGTTCCATAAACGATAAATACCTACCCGCAGTACCTCCGATTGAAATAACTGTACCACAGAACTACCCGATGTCCAGTCCTGCATGCAAGACTAACGCATACGAAAGCACGCCTTTCCTATCCAAGATTCGTTCCCAACTCTCATCAGAGCTAAAGCGCATGCCCGGATTCTACACAGTCACTGCTCTGCTCGGGGCCTGGGAATCCAGCATACGTCAAGCTTGTCTCAACGAGGTTGCCGTGATGTAG

Transcript

rna-XM_048726069.1

aggcTCCTCGAGAGCAGACGCAGACGGCCTTAAAAAAGCTTTGCATTTTATTACTGTGATACCACCCCTGCCTTGTCTGATGTTATCTTCGCCGTTTGGACGCTTTACTTATCTATATGACAAGGAATTGCAAGAGTCGTGAGTCGGTACCAAACTtgtcatttataacttgcataTGCGAAAGCCTGTGGTTTCCAATATGGAGGAGAACTGGTATCTACATTTCATTCTAAACAATATGGCGGCTCCTGCAGACGAAGAATGGCGAGCGCCACAATTTCGCCGAAAAGTCACCACACAAATAGATGCCGCTCTTAAGGAGTCTGGGAACCCCCAAATGATGACTAAGAACGCTGAGGAAATCGAAAAAGATGTGTTTTCTAAAGCCAAATCAAGGGATGAATACATGAATTATGTGGCCAAGCTTCTGGTCTATGCGAGAGATGTTGGAGGTCAAAGCCATTTGCCACGAGGCCAGCAACAAGGAATACGCATGCCTgTAAAAGTCCAGATGACCCAACAGCAGATGGTGCAGCAGATGGCGCAACCCACAGGCCAACCAAACACGAACGTCACTGGCTCTCAGTACCAGGTCAAACACCAAATGGCATTTAGAAACGTCCAGCCTGGTACCTTGgtccaacaacaacaacaacagcagcagcagcagcagcaactgcaacaacagcaattgcaacaacagcaattgcaacaacatcaacaactgcaacaacagcaacaactgcaacaacaacaacaactgcaacaacaacaacagcagcaacaactgcaacaacaacaacagcagcaacaacaacaacaacaactgcaACAACAGTTGTCACAAATGActccacaacaacaacagcaatatGTCATGTCACAGATAGCTGcatcacaacaacaacagctgcGTGCCCAGCAACAGGCTGCTTTGGCAGCACAGCAAGCTCACTCACAGCCAGCAGTCTCCCTACCTCAACCCCACCCTTCTCCTCAAATGCCGTCACCAGCTCAGTTAGGGGCCCAATCCCATCCAGGTTCAGTTTCTCAGCAGATGCATGCAGCTCAAACCCGAATGCAGTATGTCCAGTCCCCTGCTGTCATGCGTGCCCCGACTCCagcaccccacccctccccggCTAGTCAACCTGTAGCCCCTTCCCCTGTATGCATCCCTGTCCAGTCGCCAGCACCGAACATGATGAGCCCCTCACCCCAGCAGTTCATAGCACAGTCCCCAGCACCAACTTCAGTTCCAACACCAGGCACTTTAAACGTCCAGTCACCAGCATCGATCCTAAACCCTGGGTCGGTGGGGCCCTCAGTTACCAGCCCTGCCCCACTCAGCGCCGCCGAGGAACAAGCCTATCTTGAAAAGCATAGACAACTGTCCATCTACATTGAGCCCCTGACAAGGATGATTAACAAAATGAACAGAGAAAAAGAGCACAGCGGGAATGACCTGAAAAAGCTGAAAACCTTCTTGGATATTTTGACGAATCCATCTAAACGACTACAACTTGGAGTTCTCGAGAAGTGTGAACTTGTCCTGAAGAAGATGAACCTTAAACCTGTTACACCCCGAAGTCAAGTGACAACATCCCCTACAACTTCCGTGTCAGCAGCATCAACTACAACAGCTGCACCTTCGGCACGCTTCGTGGAGGACCTTGCCCAACAGATCACGGGACACGGGCTTCTAGACACGGTAGCCAGGAACCTCGGCTCACCTAACTTTTCTCACACACTAAAAAGGACATTTACACCTATCCTACAAGCCATGGAGGGACCTCCTATTTGCCCTCCGCCCCCGCCGAGCAAGAAGCTCAAGCTGAGAGATGACAATCAGAACAAGTGCCCGCTACCTCATGCACTACAAGGCGAGCTCGCACGTCTGTGCAGTCGCTTCACTGTCAAACCCGACCTTGCGGGCGCCTCTCGACAAAGCTCCACCCTGCTAAGGTGTTCCATAAACGATAAATACCTACCCGCAGTACCTCCGATTGAAATAACTGTACCACAGAACTACCCGATGTCCAGTCCTGCATGCAAGACTAACGCATACGAAAGCACGCCTTTCCTATCCAAGATTCGTTCCCAACTCTCATCAGAGCTAAAGCGCATGCCCGGATTCTACACAGTCACTGCTCTGCTCGGGGCCTGGGAATCCAGCATACGTCAAGCTTGTCTCAACGAGGTTGCCGTGATGTAGACGACAAGATCCAGGATCCCGGATGCTACGTCGCCTGTCCAAAGTCCCGGATGCTAGGTCACCTTAATAACAATCAGGCAATCTCTAGGCCTCATGGTCCAGGGTCCCGGATGCAAGGTCACCTTATAAACGTCAGGCGACCTCTTGACCTCAATGTTCAAGATCCCGAATGCAAGGTCACCGTATTAAAAGCCAGGCGACCTCTTGGCCTCATCATCCAAGATCCCGGATGCTAGGTCACCGTTATACAAGTCACGTGACTCCTTGTGGTTATTGGACAGAATCCTGAGTACCAGTAATCTCTTTATCGACCATTTAGGATGGTAGGCAATGTCCAAAATAGGTCCCGACCATTCTAGAAAATACGAAATATTAACTACGCttttgcccctccccccccccccccccccacatatGGACAAAATTTGGGAAATTGGCACCAAATTGTCCCATCACCAATTTACCCAACCTCGTTCACAGCCCCTTACGTTGCTTCTTCTAGTCGCCATGCGCTTATCGGTCTGTTGTAAAAACCCTTATGCATTTTGTCGCTGTTGCATACATAAATTAACTTTaactttatttatatatttttatgtaaaagAAATGGAGAGAACACAGATAGAGGAGCCGTGTTGCGGTGTGTTCTTTATGTAAAATGAGAATAAATTATACTATGaaatacattctttttataaCCTTTT

Protein

Uniprot

Uniprot term	Description
Q96RN5	Mediator of RNA polymerase II transcription subunit 15 OS=Homo sapiens OX=9606 GN=MED15 PE=1 SV=2
Q6NS15	Mediator of RNA polymerase II transcription subunit 15 OS=Xenopus laevis OX=8355 GN=med15 PE=1 SV=1
Q924H2	Mediator of RNA polymerase II transcription subunit 15 OS=Mus musculus OX=10090 GN=Med15 PE=1 SV=3

Pfam domain

Pfam accession	Pfam name	Description	Type	Source
PF09606	Med15	ARC105/Med15 mediator subunit N-terminal KIX domain	Domain	Interproscan
PF21538	Med15_M	ARC105/Med15 mediator subunit central domain	Domain	Interproscan
PF21539	Med15_C	ARC105/Med15 mediator subunit C-terminal domain	Domain	Interproscan

InterPro

InterPro term	Type	Description	Source
IPR027267	Homologous_superfamily	AH/BAR domain superfamily	Interproscan
IPR019087	Domain	Mediator of RNA polymerase II transcription subunit 15, N-terminal	Interproscan
IPR048385	Domain	ARC105/Med15 mediator subunit, central domain	Interproscan
IPR048386	Domain	ARC105/Med15 mediator subunit, C-terminal domain	Interproscan
IPR036529	Homologous_superfamily	Coactivator CBP, KIX domain superfamily	Interproscan

PANTHER

PANTHER term	Description	Source
PTHR31804	MEDIATOR OF RNA POLYMERASE II TRANSCRIPTION SUBUNIT 15	Interproscan

Gene Ontology

GO terms	Category	Description	Source
GO:0003712	Molecular Function	transcription coregulator activity	Interproscan
GO:0006355	Biological Process	regulation of DNA-templated transcription	Interproscan

KEGG pathway

KO	Enzyme	Enzyme ID	pathway	mapID	Source
K15157	MED15; mediator of RNA polymerase II transcription subunit 15	-	Transcription machinery	ko03021	deepkoala