Gene detail

Detailed information of XP_048582044.1 in Nematostella vectensis

Genomic Location: NC_064037.1:6269803...6272170
NR annotation: XP_048582044.1, uncharacterized protein LOC116616213 [Nematostella vectensis]
Species Nematostella vectensis · all data for this species · gene families

Gene Structure

More details in JBrowse

Sequence

CDS

Transcript

rna-XM_048726087.1

AACCATAGAAAAGAGTGGAAAACCATTTTGGTGcgcattttctttattttttttgcacgTTGTATGTAAAAAAGCGCTTTTTATCTCTAGATAAAACGGATATTGAAATAAGCGCCATAGAAATCCAAGTATCCGAACATTTCCTTACCAGAAAAAGACTATGCAGCCTAGATATCCTTACGATTGCGCGCCTGAGCGCCTGGTACGTTGGGCGTAACGATCGCTCCCATCATGCACCTCTCGCGTAGCAATCGTAATCGGCAAAATGGCGTCTTCCAGTTCCTATGTTTCTAACAGTGATTTCATGGAAGAAGTTCGAAAATGCGACTGTCTGTACAATAGATATCACCCGGAATACaaacagaaagaaaagaaGGCTGAGTGTTGGGCTGAGATTGGAGAAAAATTCAACATTTCCGCTAGCGATGCGGAAAAGAGGTTCAAAAACATACGAACTTCGTACGGTCGCTTTCTCAAACGCATTCGTGGCAGATCTTTAACTGTGGGAAGCTTTCCGATCCCTGAGCATTTCTACGGTTTGGATTGGTTGAATTTCTACATATCTCCGAGACATAGAATGACAAAGCTACAACAAGTTCAGAACAATGGGGATGCCCCATCGTCTAACGATGGCGACGACGATACGATACACGAGCATAAAGAAGATAAACAAGAAGCTACAACGGCTACGACAAAAAACAATACGGGCACGCGACAAGAGCACTTACAGTCCCGACCAAGCCAAGAAAAATCGCGTAATGTTAACCAGAAACCCCTGAACAAAAGACTAGATGATGAAGTGGACAGGGCACTTTTTAAGACAGCAGCTTCCATATGTGAGAATTTCAAAGAAATGGAGAGAAAGCGGCCACACGAGGACTACGAGGAAGATGGGTTATTTTTAAGAAGTTTGATACCGCGAATGAAAAAGCTTTCCCCTCAATCCAAGGCAGCCCTTCGTATCAAAATCGAACAAGCGTTTTATGAAGCCGAGTTCTCTCAACCCTCCACTCACGTACCGATAGTGGTCCATGTGAACGAACCACAAATTAATCAAGAGTTTTAAAAACTTAAAGACACCAGACTTGTAGCCTTGTAGAGACATGTACAGCTTAAGATATCATGTAAAAAGTCTAAGATTTGGCAATTCTTTAAGAAGGAAAGACTGTGCTTTTGCTTTTGGCCGCATGATGGCTGCATGGTGCGAAAGTGCCACACCCTAGGGTAAGTTTCAGAGCACCCAAAGCACTCTCCCTCTgacaccccctcccctgagtggtaaaatttgaaataagcttCTAATAAGCACCCTCTTTGTAGGAATTTCCTATTCCCTTATTTCTAATCCTGAACAAATATTTGTCTTTGTGTAATTCCAGAAAAATCCATACCCCACCACGGGGGACTGGGAATTCTagaggatggggggggggggggggggggcagtcagCCCTATTTTCCTGGGGAGAAATACCCTATTTTCCATATAATCACTGTATTTTGCTGTTGAAAATTGGTGGGTGTATGGTTTTTTCTGGAATTACCcatttctaataaaaaagcaCCAAGTTTCTAGAGAGCATCCCTACTCAATAGCCTTCCCTGTAAGACCTCTAAAAAGATATACAAATAAGCTGGGGGTGCTAAAAGAAGCAAATATGGAACTTGCTATAATTTGGGGCTGTACAACTAATGCTGTAATGCAGTACAATGTAATATAGTAGGAGGGATTTTTGAATCTGTTTGTGGGTGGGTTATGCCAATCATTAAGCTagccaaaaaatatttataggTGAAATTTAGGAACAGTCTGTGGCcatgtttgtgttttatttttatggtaATTTTTTAACTTTTGAAGCAAGCATTTACCTTTCTAGTGGCAGTGCAATTGGCGACCAGGGCTGGTCCAGTGGAGTGTGTTCTCGTCCTCGCTTGGGTTGGGGTACAAAAGAATCTCCAAATCTTAGTCTTTTTgcatatgatatctatgatTGCACACTGTCTCAGTAAAACGCTTGCAAACACTTGCCATTCAACGTACACACACACATTATTGGCCAAGTGTGCAGACTGTGCATCtgcttatttttttaggttttccatcttttttatGGACGAAGAGCAAGACACCTTTGAATAAGggcaataaaatatttattggcATCAATGCATTATCTTAGGAAAATGGTAACTGTATAAATCATTCATTTTAAAAAGGTTCTATTATAGGGGAGATGGTGTCTTTTTTGCGGTCATGAACCTCCATATCTAGAGCAGGGGGACAGTGAGACTTCTGTATAGGGAGCCTCTTCGAAGCAAACACATCTCtataaaagaagaagaagaaaaatatgaTTTAATCTGA

Protein

UniProt (Swiss-Prot top hit)

No Swiss-Prot hit above the reporting threshold for this gene.

Gene family

Family type	Membership / link
Orthogroup (gene family)	OG0000937 (this species only)

Pfam domain

Pfam accession	Pfam name	Description	Type	Source
PF02944 all species →	BESS	BESS motif	Motif	Interproscan
PF10545 all species →	MADF_DNA_bdg	Alcohol dehydrogenase transcription factor Myb/SANT-like	Domain	Interproscan

InterPro

InterPro term	Type	Description	Source
IPR004210 all species →	Domain	BESS motif	Interproscan
IPR006578 all species →	Domain	MADF domain	Interproscan
IPR039353 all species →	Family	Transcription factor Adf-1	Interproscan

PANTHER

PANTHER term	Description	Source
PTHR12243 all species →	MADF DOMAIN TRANSCRIPTION FACTOR	Interproscan

Gene Ontology

GO term	Category	Description	Source
GO:0003677 all species →	Molecular Function	DNA binding	Interproscan

Search by domain instead of by gene. Any accession above (InterPro, Pfam, PANTHER, GO, KEGG) can be used as a query on the Functional Domain Search page, which searches all 148 annotated genomes at once.

KEGG pathway

No KEGG orthology assignment for XP_048582044.1.

Searching by KO or pathway ID across all species is available on the KEGG Pathway page.