Gene detail

Detailed information of XP_048582434.1 in Nematostella vectensis

Genomic Location: NC_064037.1:17680913...17686701
NR annotation: XP_048582433.1, uncharacterized protein LOC5506965 isoform X7 [Nematostella vectensis]

Gene Structure

More details in Jbrowse

Sequence

CDS

LOC5506965

ATGTCCAGGAAGACAGGACCGAGATCTGGGGTGAATTTACAAGCTGAAAAAAGGCGGAAGGTCGAAGAATCGGATGATGATCTTGATCTGTTTTCATTTGACAACCAAATCCCCCTGACATTCAGTGTACCGACCAGCCAAACGGCCATCAGTATAGATGATAGTGATGATTCAGATGTGGATCAAGGCTGGGAGAGAACCAATGAGGCGGAGAATGATGTTGTAGATCTGGCTAATAGCAGCGAAGACGACGAACTCGACCAAGCACTAGCGGTGGATGGTGCTGATGACTCGGGTAACTTAGATGAAAGACAGGAGAGTCATGGCAGTAGACGATCCCCATCCCCTCCACCACCCCCACTGCAAGCTGATTTGATAAAGCTGCATGTTCAGATGCAGAGGTCTACAAGAGAATTTGATGCTCTAAAGCAAGTATTCACAGCATCCCCAGTCCCCATCAGGAACCCAAGCATTATTTTACTTAATGAGGAATCTGCCTGCTCCTCGGTTGACAGAGAAATACATCTCAAAATAAGGACGGCATCAGGGATCAAACGATTCTCTCTCAAAGCTATTGAAAAGTTTGAGTCAGTTATAGAAGAGCTAGCAGCTCAAGAAGGAGTAGACAAGAAAAACATTCTTTTATCCTTAAGGGATCAAAACATCAACCCAGACGACACTCCACTCAGGGTGGGGGCAACTGTGGCAGATATCATTGAATGTGTTTTACTAAAGTCACAAATTCCAGAGGAGGATGAAAATGCCATGACAATCAGAGTCCATAGTGGCAGCGCTGCCACGTCCAAGGACTTCAAGGTTATCAAGGTATGGTATTCTACCTTCTTTTGCTCTTTTACCATCCACACAGGACTACACGGTTATCAAGGTATGGTATTCTACCTTCTTTTGCTCTTTTACCATCCATTCAGGACTACACGGTTATCAAGGTATGGTATTCTACCTTCTTTTGCTCTTTTACAATTCACACAGGACTACATGGTTATCAAGGTATGGTATTCTACCTTCTTTTGCTCTTTTACCATCCACACAGGACCACACGGTTATCAAGGTATGGTATTCTACCTTCTTTTGCTCTTTTACCATCCACACAGGACTTCAAGGTTATCAAGGTATGGTATTCTACCTTCTTTTGCTCTTTTACCATCCACACAGGACTACATGGTTATCAAGGTATGGTATTCTACATTCTTTTGCTCTTTTACCATCCACACAGGACTTCAAGGTTATCAAGGTATGGTATTCTACCTTCTTTTGCTCTTTTACAATTCACACAGGACTACATGGTTATCAAGGTATGGTATTCTACCTTCTTTTGCTCTTTCACCATCCACACAGGACTGCACGGTTATCAAGGTATGGTATTCTACCTTCTTTTGCTCTTTTACCATCCACACAGGACTTCAAGGTTATCAAGGTATGGTATTCTACCTTCTTTTGCTCTTTTACCATCCACACAGGACTACACGGTTATCAAGGTATGGTATTCTACCTTCTTTTGCTCTTTTACCATCCACACAGGACTTCAAGGTTATCAAGGTATGGTATTCTACCTTCTTTTGCTCTTTTACCATCCACACAGGACTTCAAGGTTATCAAGGTATGGTATTCTACCTTCTTTTGCTCTTTTACCATCCACACAGGACTACACGGTTATCAAGGTATGGTATTCTACCTTCTTTTGCTCTTTTACCATTCACACAGGACTACACGGTTATCAAGGTATGGTATTCTACCTTCTTTTGCTCTTTTACCATCCACACAGGACTACATGGTTATCAAGGTATGGTATTATACATTCTTTTGCTCTTTTACCATCCACACAGGACTTCAAGGTTATCAAGGACTACACTGTTATCAAGGTATGGTATTCTACCTTCTTTTGCTCTTTTACCATCCACACAGGACTACAAAGATATCAAGGACTACATGGTTATCAAGGATCAGCCTCTGCAAAGTCTCATCGACAGATACTGCGAGTTTCGCAAACTTCCATCTTCCAAGCTTCAGTTTTCGTTTGACGGAGATGTGATCAAGGGCAGTTCAACACCAGCCGAGCTAGAGCTGGAAGATGAGGATATCTTGGATGTCAGAACATTTTAG

Transcript

rna-XM_048726477.1

TTATGTGGTATTCAAATGCTTTTCTTTTGACAAAGCAGTTTTTTCTGTACGCTCGGGCGACCTGTGTTAGTTATCCCAGGCGAGAGCTTTGCATTGTGGGGTTTATGAAAGTTTAGAAGAAGATTCGCGGGAGATGTTGAATAGGAAAATGATTATTTGTGGCCGTAAGGTAACTTAGGGATTAATCCCATAGAAAATAGCATGTCCAGGAAGACAGGACCGAGATCTGGGGTGAATTTACAAGCTGAAAAAAGGCGGAAGGTCGAAGAATCGGATGATGATCTTGATCTgttttcatttgacaaccaaatcCCCCTGACATTCAGTGTACCGACCAGCCAAACGGCCATCAGTAtagatgatagtgatgattcAGATGTGGATCAAGGCTGGGAGAGAACCAATGAGGCGGAGAATGATGTTGTAGATCTGGCTAATAGCAGCGAAGACGACGAACTCGACCAAGCACTAGCGGTGGATGGTGCTGATGACTCGGGTAACTTAGATGAAAGACAGGAGAGTCATGGCAGTAGACGATCCCCATCCCCTCCACCACCCCCACTGCAAGCTGATTTGATAAAGCTGCATGTTCAGATGCAGAGGTCTACAAGAGAATTTGATGCTCTAAAGCAAGTATTCACAGCATCCCCAGTCCCCATCAGGAACCCAagcattattttacttaaTGAGGAATCTGCCTGCTCCTCGGTTGACAGAGAAATACATCTCAAAATAAGGACGGCATCAGGGATCAAACGATTCTCTCTCAAAGCTattgaaAAGTTTGAGTCAGTTATAGAAGAGCTAGCAGCTCAAGAAGGAGTAGACaagaaaaacattcttttATCCTTAAGGGATCAAAACATCAACCCAGACGACACTCCACTCAGGGTGGGGGCAACTGTGGCAGATATCATTGAATGTGTTTTACTAAAGTCACAAATTCCAGAGGAGGATGAAAATGCCATGACAATCAGAGTCCATAGTGGCAGCGCTGCCACGTCCAAGGACTTCAAGGTTATCAAGGTATGGTATTCTACCTTCTTTTGCTCTTTTACCATCCACACAGGACTACACGGTTATCAAGGTATGGTATTCTACCTTCTTTTGCTCTTTTACCATCCATTCAGGACTACACGGTTATCAAGGTATGGTATTCTACCTTCTTTTGCTCTTTTACAATTCACACAGGACTACATGGTTATCAAGGTATGGTATTCTACCTTCTTTTGCTCTTTTACCATCCACACAGGACCACACGGTTATCAAGGTATGGTATTCTACCTTCTTTTGCTCTTTTACCATCCACACAGGACTTCAAGGTTATCAAGGTATGGTATTCTACCTTCTTTTGCTCTTTTACCATCCACACAGGACTACATGGTTATCAAGGTATGGTATTCTACATTCTTTTGCTCTTTTACCATCCACACAGGACTTCAAGGTTATCAAGGTATGGTATTCTACCTTCTTTTGCTCTTTTACAATTCACACAGGACTACATGGTTATCAAGGTATGGTATTCTACCTTCTTTTGCTCTTTCACCATCCACACAGGACTGCACGGTTATCAAGGTATGGTATTCTACCTTCTTTTGCTCTTTTACCATCCACACAGGACTTCAAGGTTATCAAGGTATGGTATTCTACCTTCTTTTGCTCTTTTACCATCCACACAGGACTACACGGTTATCAAGGTATGGTATTCTACCTTCTTTTGCTCTTTTACCATCCACACAGGACTTCAAGGTTATCAAGGTATGGTATTCTACCTTCTTTTGCTCTTTTACCATCCACACAGGACTTCAAGGTTATCAAGGTATGGTATTCTACCTTCTTTTGCTCTTTTACCATCCACACAGGACTACACGGTTATCAAGGTATGGTATTCTACCTTCTTTTGCTCTTTTACCATTCACACAGGACTACACGGTTATCAAGGTATGGTATTCTACCTTCTTTTGCTCTTTTACCATCCACACAGGACTACATGGTTATCAAGGTATGGTATTATACATTCTTTTGCTCTTTTACCATCCACACAGGACTTCAAGGTTATCAAGGACTACACTGTTATCAAGGTATGGTATTCTACCTTCTTTTGCTCTTTTACCATCCACACAGGACTACAAAGATATCAAGGACTACATGGTTATCAAGGATCAGCCTCTGCAAAGTCTCATCGACAGATACTGCGAGTTTCGCAAACTTCCATCTTCCAAGCTTCAGTTTTCGTTTGACGGAGATGTGATCAAGGGCAGTTCAACACCAGCCGAGCTAGAGCTGGAAGATGAGGATATCTTGGATGTCAGAACATTTTAGATAACACACCACAGTCAGTAAACAGTATCGCTGTATGTCTAATACGAGGGGTTTGCGCATGGCTGTTATTGACTCCATTTTCTCTCAGCACTGGAATAGTCTTACAGGGGCACGTGAGTCGAACAAATCGCGGGTAAATATCGGAATACCCTATACCGATAAAGGTGTGAGGTTCTTTTGTAGGACAATTGTGGCAAGGTATTCTTAAATTGCATTGCAGCACCAGGGCGTTagatttttttgcaaaatggGCCATCAGCGGAAGTATTTTTGTTTCTCACACGGTCATAAAGCAAGTTGGTTTGTTATGTAATTCTGCGTGGAGCCTATAGGTCTTGCCATCGTCTGCTTCCAACGTTTGCAATGTGATCTAAGCCCAGTGAGCTTTTTTAAAAACCCTAGCCCCACATCCGATTGCAAAGACAATATGCGTCATAATTGTTCAATAAACAGGTTTATTTTGACCAGGTGGCAAGACACGTGAAAATTGCTCTCACGAAGACCTTTGTCAGCCATTATATGACAGCCtttatattgttttcattattatttatgCTATTTATCATGTAAGCATAACTATGTTTTCAGTAACCAATGGTGTGACTGTTATTCGCAATCACAGCCTCGAAAA

Protein

Uniprot

Gene family

Uniprot term	Description
Q5ZHQ1	Small ubiquitin-related modifier 3 OS=Gallus gallus OX=9031 GN=SUMO3 PE=3 SV=1
Q7ZTK7	Small ubiquitin-related modifier 2-A OS=Xenopus laevis OX=8355 GN=sumo2-a PE=3 SV=1
Q6GPW2	Small ubiquitin-related modifier 2-B OS=Xenopus laevis OX=8355 GN=sumo2-b PE=3 SV=1

Gene family	Subfamily
Ubiquitin Family	ULD\|UBL\|SUMO

Pfam domain

Pfam accession	Pfam name	Description	Type	Source
PF11976	Rad60-SLD	Ubiquitin-2 like Rad60 SUMO-like	Family	Interproscan

InterPro

InterPro term	Type	Description	Source
IPR029071	Homologous_superfamily	Ubiquitin-like domain superfamily	Interproscan
IPR052324	Family	NFATC2-Interacting & DNA Repair	Interproscan
IPR022617	Domain	Rad60/SUMO-like domain	Interproscan

PANTHER

PANTHER term	Description	Source
PTHR47187	NFATC2-INTERACTING PROTEIN	Interproscan

Gene Ontology

GO terms	Category	Description	Source
GO:0001816	Biological Process	cytokine production	Interproscan
GO:0045944	Biological Process	positive regulation of transcription by RNA polymerase II	Interproscan

KEGG pathway

KO	Enzyme	Enzyme ID	pathway	mapID	Source
K22697	SAMD8; sphingomyelin synthase-related protein 1	-	Membrane trafficking	ko04131	deepkoala