Gene detail

Detailed information of XP_048582602.1 in Nematostella vectensis

Genomic Location: NC_064037.1:10978440...10984342
NR annotation: XP_048582600.1, syntaxin-12 [Nematostella vectensis]
Species Nematostella vectensis · all data for this species · gene families

Gene Structure

More details in JBrowse

Sequence

CDS

Transcript

rna-XM_048726645.1

GTATTATCAGTGTTCAGTGTGTGCCAGATTTTGCAAATTTTATTCCTCTGTTGACGAGGTTTAAAGTTATCACTTGAATTCAATCTGCACATCGTTTGTATGAAGCACCATGTCATTCGGAGAATACAACAATTCAAGGCCGTCATCAGGTTTTGCAAGGAATGACAATTCTGAGTACACACGTCTGTGTAACAGTATTAGCCATAATGTACAGCAGATGAACAATAATGTGTCACGCATTGAGAGATTGGTCGACAAAGTGGGAACTACTGAAGATGTCACAAAAAAACTcCAACAGAGTGAACGAGAAACACAGAAGCTTGCAAAAGAAACCAATTCTTATCTGAAGCAACTGAACATGCTTTTGGAGGGTATCAGCCCCTCAGAGCGGAGGCAAAGAAAGATGCAGATTGAAAAGTTAACCAATAACTTTTCATCATCACTAAACAACTTCCAGAAAATACAAAGGGTGGCAGCTGAGAGAGAGAAGGAGTGTGTTTCAAGAGCGAGAGCTGCATCAATGGGCATAACCCCAAGTCCCATGGGTGGTTATCATGGAGGCGAGACCTTGATTGACTTTGACAGGACTGGTGGTGGTGGCAGCATCCAAGCGCAATCAGAGCAGGAGATCGACCTTGAGCTGATTGAGGAGAGAGAACGAGCAATCAGACAACTTGAGGCTGATATTGTTGGCGTGAATGAGATATTCCGTGACCTCGGAAACATGATCCATGAGCAGGGTGAAGTAATCGACAGTATAGAGGCAAATGTTGAAACCGCTGCTGTCCACGTAGAAACAGCTAATGTTCAATTGGACAAGGCCAGGGGCTACCAGAAAGCATCGCGCCGTAAGATGTGTTGCCTCTTGATGATTCTGGTGATTGCCGCTGTTATCATTGGCGTTGTCATCTGGCTGTCagtgaaataataaaactgtaGAATCAAGATTTGTTAAAATGTTATGGATGCTAATTGGGTGAAAAATTAGACAGTTATCTATAATTCAGTAAGAACTCATTTTCTGTAGAGTTCTCCTTGGGGCCAGTTGCATTTTTAGTAAATAGAGGCTCTTGTAACCATTTGTCTTTATTACATAACTGTACTGCACCCAGTGCCAAGGTACATGCAATCAGAAAGTTAATGCCCTCACATATTCCAAGGCGGCATGTAAAGGGCTCAGCATTTCTGGTTCAATCAATAACCGATATCTTGTCTTCAGGTTCTGGTTCCTTGTCAGTGGGTTCCAACTGTATTGTACGTGTGTGGTATCTTGAGCTTTTCCCCCTGCTCAGTGATAGAAAACATCAGTAATATTGTTGTATCGAGGTCAAAATTACGCTTGGGAGAGcagatttgtatcgtaaaatcgagaatatTGTTGTATACAATATTGTTAGATTGAGGTAATTTCTAATCTACAgtatttcactgtatttttgctGAGGAAAAGGAACCTCATCATAACATTGAGGTTattgtaaaatccaggttccactgtgtTTTCATTataagctgcattgtcaccagtttatttCTGGTCCATTATGTAACAATCTCTGgtgatttttaatggaaaacgcAACAAATAATCCAAAATTGTAATTAAGCAGTGTGTATTTTGCAAGTTTCTTTGTGGATGTGACTAATAATTAAGAGCAGATGGTCTGTTAAATTGTTCAGATTCCAATAAAATCTTTTGTCCCTTGTTGTTTGAGGTTTTTATTGGCCCtgcggaagtaaactggtgacaatgtggcttaAAATCTACTATTATGCATGCAAAACTGTATCCCCCTTATCAAATTGTATATACTATGTATCTCTGTCTTTACacagcaccagcaccaaatTTCATAGGTATTGGAGTAACATGTGGACTGTCAGAAAAGGTTAATCAAGAAATAATTTGCCAGAAATTTATGAAATAGTTGTCTGTTCTTTTTGTAGAATAAAAATTAGAGAATAGTAGAGTTTTAGGCTACACACTCAAACTGTTATTATCCAGGTTTTTACACAATaaaatgttgaaatattttgtaataaaatagAATAACTTGA

Protein

UniProt (Swiss-Prot top hit)

UniProt accession	Description
Q5RBW6	Syntaxin-12 OS=Pongo abelii OX=9601 GN=STX12 PE=2 SV=1
Q3ZBT5	Syntaxin-7 OS=Bos taurus OX=9913 GN=STX7 PE=2 SV=1
Q9ER00	Syntaxin-12 OS=Mus musculus OX=10090 GN=Stx12 PE=1 SV=1

Gene family

Family type	Membership / link
Orthogroup (gene family)	OG0001710 (this species only)

Pfam domain

Pfam accession	Pfam name	Description	Type	Source
PF14523 all species →	Syntaxin_2	Syntaxin-like protein	Domain	Interproscan
PF05739 all species →	SNARE	SNARE domain	Family	Interproscan

InterPro

InterPro term	Type	Description	Source
IPR006011 all species →	Domain	Syntaxin, N-terminal domain	Interproscan
IPR000727 all species →	Domain	Target SNARE coiled-coil homology domain	Interproscan
IPR010989 all species →	Homologous_superfamily	SNARE	Interproscan
IPR045242 all species →	Family	Syntaxin	Interproscan

PANTHER

PANTHER term	Description	Source
PTHR19957 all species →	SYNTAXIN	Interproscan

Gene Ontology

GO term	Category	Description	Source
GO:0016020 all species →	Cellular Component	membrane	Interproscan
GO:0016192 all species →	Biological Process	vesicle-mediated transport	Interproscan
GO:0000149 all species →	Molecular Function	SNARE binding	Interproscan
GO:0005484 all species →	Molecular Function	SNAP receptor activity	Interproscan
GO:0006886 all species →	Biological Process	intracellular protein transport	Interproscan
GO:0006906 all species →	Biological Process	vesicle fusion	Interproscan
GO:0012505 all species →	Cellular Component	endomembrane system	Interproscan
GO:0016021 all species →	Cellular Component	membrane	Interproscan
GO:0031201 all species →	Cellular Component	SNARE complex	Interproscan
GO:0048278 all species →	Biological Process	vesicle docking	Interproscan

Search by domain instead of by gene. Any accession above (InterPro, Pfam, PANTHER, GO, KEGG) can be used as a query on the Functional Domain Search page, which searches all 148 annotated genomes at once.

KEGG pathway

No KEGG orthology assignment for XP_048582602.1.

Searching by KO or pathway ID across all species is available on the KEGG Pathway page.