Gene detail

Detailed information of XP_048583151.1 in Nematostella vectensis

Genomic Location: NC_064037.1:18351500...18364890
NR annotation: XP_048583151.1, uncharacterized protein LOC5504270 isoform X2 [Nematostella vectensis]

Gene Structure

More details in Jbrowse

Sequence

CDS

LOC5504270

ATGGCGGAAGAAAACGCCAACCACGGAACCAGAGATTTCGATACAGACAGAAAGGGAATGATGGAGAAATGGCTGATACCTCTCAAGGAAGATCTCGCGTCGTGGATTTCGCGTTTACTGGGAGAGGAAGAGCTAAATACTGACACTTTTACATCTATGCTAGATACGGGTGTAGTGCTTTGTAGACTAGCGAATTTTATCCAGACAGTAGGTGAGGAATTCTTTGTACGCAATCCAAAGTTTCCTCGGAGAGGTTTATTTCCCGCGTGCGGTGTAACATACAAACAGCGCGGAGCAACTCATGGCTCGTTTGTCGCCCGAGACAACGTTTCTAATTTTATCCGATGGTGTCGCGAACTAAGGGTTCCCGACGTTATCATGTTTGAAACGGAAGACTTGGTTCTCAACAAAAACGAGAAAACGGTTTTATTGACCTTACTCGAGGTAGCGCGCAAAGCATTTAAAGTCGGCGTCGAGCCGCCAGAACTTGTGCGCTTAGAAAATGAAATCGACCAAGAGTTAGAACTGGAGCCTGAGCCCTTACAGGAGCCAGCACCGAGACAAGAAGTGAGATTACTCAAGAAAAAACACAAATCACACAGCCTGGATGATTTGGTGTACGAAGTCTTGGATAAATGTACATGCCCCACGCGATATCCTGTACAGCGGATAGCAGATGGAAAATACAAGATGGGTGATAGCAAGAATCTCATCTTTGTCAGGGTGATGCGAAAACATGTGATGGTGAGAGTTGGCGGAGGTTGGGACACATTGGACCGCTATTTCGACAAACACGACCCGTGCAGAAATCACGATTTAAAGCAACGTCGTCCTTCTAGAACGCGACCTTCAAGCAGTCAGCGTAGCTACCGGGAAAGCCAAGAACAAGTTCGCTCTCCCAGCTCCATGAGTTTATCGAGTACAGAGAGCCATGACTCTGGAAGTACCATTCATTCGCATATGTCTGTACCAGTACAGGTAAAACACAGAGACACGTGTCGACATCGTACTGGACCTGCAACCCGCTGCATCTCGCCTGGCCCTAGAAACACACGGAGCCCTCTCACCCGGGGGGCCACCCCTCAGCACGCCACGGACAGCATAAGCAACCGCCCCTCCAGGCGCAGCGCGAGCATGCAAGACCTTAATCAGAGCCTCAACGCTACCGCACCCGCCGCGATATCCACCGCTAAGACAAGAGGCTCCGGTAGACGAGCGACGAGTGAAACGCGAAAAGATTCGAAATCGGCACCGGGGACGCCAGGCCAGCGGAGAAAAAGTGTAGCAGTAACACCACCAAGACTATCGGCCCCACACATCCAGAGAGGTACAGCGTCACCCCGGTCGGTGCCGCCGAGGACTATGGATACCCAGGGAAAGTTTCACGCGCGTAGCCGAAGCATGCAGGATCTGAACGTTCATCGCGCCGCAAGCCCAACAGGTGCACGAACAGAGAAGTCACGAGCACTGTCAGCTACTCGGTCCACTTCGGTAAGAGGTCGGCCTGGATCGGAAGGCCCTCGTCGACAAAGCATAGCAACCACACCTCGGAAGGCGACATCGACGACTCCTGTCGGAAGCCCGAGGATTACGAGAAGACAGTCAAGCGCCGCGCAAATAGATACATCACGTGTAAAAACCACAGGGAGCCCAAGAAAAGCATCAAGTGTAAACCGAAGCTCGACTTTCAGTCCCGCGAACAGCCCGAGGGTCACCCGAAAGCAGATTACTTCTTCTGATAAAGGCTCACGGTCACCTGGGAAAGTAGCGGAGAATCTTCGGTCCCAGTCTCCTGGCACAAAGCCTCTCACAGAACCGTTCACTAGGTCTAGAAGTGCGATAGCATTTGATTCCAGGCCTCGGTCGGCTACTGACAAGAGCGAGAGAAAGAGATCTTTGACGGTGGAGCGGCCCATCGCAATACAAGGTACAGTCAGTACACGCTCATCCATGGGGCCCATCGCAATACAAGGTACAGTCAGTGCACGCTCATCCATGCGGCCCATCGCAATACAAGGAACCCAAGAAAAGCCAAACCCCCAGAGACAGTACTCTTCACCACAAAGTCCAACAAAATCTAGAATACCGCTAATGATCAAATCACCCGCGAAATCAGGGCGCCCCACACCACAGGCGTCCCGCCCAAGACCGAGTACTCAGGACTTTGAGCCACCGCAATTAACCCGCTACTACTCTCAAGATCAAGCAAGGCGGCCTCACAGGACCTGTGAGTGCGGGATGCAAGTGTTGCCTCACAACGCCGACTACACGGCACAGGAATCGTTCACGAAATATGCTACACCACAGGTACCCCAGAACGGCTATGGCGGTATTTCGGAGGACGATTTCAGAACCCCGTTCGACGATTACGTGTATACTTCTGAGGATTCCGCCAGTGTGTTATCGGAGAGCGTCAGTGAGTGCGACTCCCACGTGACTTACAGCGTCAGCACTGGCGAAGTCGCCAACCCTGATTTGCATATTGACCTCACCGAGGGGTACAGAGGGTCCAAACAAAGCAGCGGCGAGACCACGCCCAGTGACGGGGGAGCACCAATCTTGTCAGATGTGGTCAGGGATTACGATTATTTTGACGTAGAGACCGAGTTGCGGTCAACCAGTAGTGACCGGTCACGTGGTTCCACACCGAGCATGGACTTGTTAGAATCACGTGATCCCGTAACGCCTTCATCACATGACCAGGTCGACAGTTTTGAGGAGGGTTATCCACGAGGTTTGAGTATAAAGGAACGCTTGAAAAGCCTTAATGTAGGACAAACCTCCATAAGCCCAACACTGCGTGGTAAGGTTTTCGCTGGCAATGAGGATGATGGTCTTGGTAAAGCCGATAAACCGGACAAAAATATGAAGGATCAAGGTTTTTTGTATGTGGATTATGCCACTCAAGCGCCAGAAGAGAGATCCAAGTTCTTCGATATCGACCGAGAAATGGGCCAAGACAACTCCGCCCCGGGGTCACCGAAAAAAGTCTCTCTCGTAAAATCGCTGATTGGAAGCATCGAGAAACGAAAGAGAAGCGACCCACAGCCTCCAAATCTGAAACAAAAGCAGCAACCAACGGAGCCTCGCACTGGTGGCGAGGTAGTGACAGGATCACGTGACGTTTCGTGGGACTGTGCAGGCACAGCTGGTACTCATAGCGAGCTCGAGCAGGGAGCCATTTCCTCAGCAGTTACGCCTCTTATAATCAAAGAGCCATTTAGTGACCAGGCCTTGATACCCAAAAACGTGGACGAAAATAAGAATATCACGAGAGACTGCGAGCTGCAGATGAAATCACCGAGCGCTACTAGCCTTGAGGATCGACGGCAGGAAGAAGAGGAATTACGGCAATTTGAGGAAAACGAAAATAACTTCATCGTACACGAGTCAAAGCTGAAGGACGTCGACAGCTACGAAGCACATTCGGAGACTCATAAAAACGAGGCTGCTATCGAAAAAAGTCCGAAGAGGTCCGAAACTTTGCCGAAAGATATCGACGTCTTCCCGAGATCTCCAAGGCAATTTTCGCTAGATGAAATGATTGCTGATATGTTGCCAGGAGACTCAAAGAGCGATAGACCTGAGTCGCCACTTAAGCCTCATTTTCAAGCACTAATTTGA

Transcript

rna-XM_048727194.1

CGGTCCCAAATGCGAAGTAATTGACGCAGAGAGTCTGCCTTGGCGTTTAGCATAATGCATTTAGCTCGATGACATGGTTTCATTGCGACTTAGTGTGAGCGCGGTGATACGGCCAGCAGTATGCACCGTGTAGAGAGGGTGGTATAACTACGCTTATGCCGACAACATCGCCAGTTCGTCATCTCTCTGATGTAAACATTCGCCCCCGACATATCCGCGAGTCGGCTGACATCGCATTGTTTCCGACTCGTGTTTTTTTGCGCCTGTACGCCTTATTGTACTTGCTGTTATAAAtgataaattcaaagcagtaAGCATTAGCCAATTGGATTTCGCCTTTTCTAAATAATTTCCGAATTAGACATTCCAGCTGTAAGAACGAACATGGCGGAAGAAAACGCCAACCACGGAACCAGAGATTTCGATACAGACAGAAAGGGAATGATGGAGAAATGGCTGATACCTCTCAAGGAAGATCTCGCGTCGTGGATTTCGCGTTTACTGGGAGAGGAAGAGCTAAATACTGACACTTTTACATCTATGCTAGATACGGGTGTAGTGCTTTGTAGACTAGCGAATTTTATCCAGACAGTAGGTGAGGAATTCTTTGTACGCAATCCAAAGTTTCCTCGGAGAGGTTTATTTCCCGCGTGCGGTGTAACATACAAACAGCGCGGAGCAACTCATGGCTCGTTTGTCGCCCGAGACAACGTTTCTAATTTTATCCGATGGTGTCGCGAACTAAGGGTTCCCGACGTTATCATGTTTGAAACGGAAGACTTGGTTCTCAACAAAAACGAGAAAACGGTTTTATTGACCTTACTCGAGGTAGCGCGCAAAGCATTTAAAGTCGGCGTCGAGCCGCCAGAACTTGTGCGCTTAGAAAATGAAATCGACCAAGAGTTAGAACTGGAGCCTGAGCCCTTACAGGAGCCAGCACCGAGACAAGAAGTGAGATTACTCaagaaaaaacacaaatcaCACAGCCTGGATGATTTGGTGTACGAAGTCTTGGATAAATGTACATGCCCCACGCGATATCCTGTACAGCGGATAGCAGATGGAAAATACAAGATGGGTGATAGCAAGAATCTCATCTTTGTCAGGGTGATGCGAAAACATGTGATGGTGAGAGTTGGCGGAGGTTGGGACACATTGGACCGCTATTTCGACAAACACGACCCGTGCAGAAATCACGATTTAAAGCAACGTCGTCCTTCTAGAACGCGACCTTCAAGCAGTCAGCGTAGCTACCGGGAAAGCCAAGAACAAGTTCGCTCTCCCAGCTCCATGAGTTTATCGAGTACAGAGAGCCATGACTCTGGAAGTACCATTCATTCGCATATGTCTGTACCAGTACAGGTAAAACACAGAGACACGTGTCGACATCGTACTGGACCTGCAACCCGCTGCATCTCGCCTGGCCCTAGAAACACACGGAGCCCTCTCACCCGGGGGGCCACCCCTCAGCACGCCACGGACAGCATAAGCAACCGCCCCTCCAGGCGCAGCGCGAGCATGCAAGACCTTAATCAGAGCCTCAACGCTACCGCACCCGCCGCGATATCCACCGCTAAGACAAGAGGCTCCGGTAGACGAGCGACGAGTGAAACGCGAAAAGATTCGAAATCGGCACCGGGGACGCCAGGCCAGCGGAGAAAAAGTGTAGCAGTAACACCACCAAGACTATCGGCCCCACACATCCAGAGAGGTACAGCGTCACCCCGGTCGGTGCCGCCGAGGACTATGGATACCCAGGGAAAGTTTCACGCGCGTAGCCGAAGCATGCAGGATCTGAACGTTCATCGCGCCGCAAGCCCAACAGGTGCACGAACAGAGAAGTCACGAGCACTGTCAGCTACTCGGTCCACTTCGGTAAGAGGTCGGCCTGGATCGGAAGGCCCTCGTCGACAAAGCATAGCAACCACACCTCGGAAGGCGACATCGACGACTCCTGTCGGAAGCCCGAGGATTACGAGAAGACAGTCAAGCGCCGCGCAAATAGATACATCACGTgtaaaaaccacagggagcccaagaaAAGCATCAAGTGTAAACCGAAGCTCGACTTTCAGTCCCGCGAACAGCCCGAGGGTCACCCGAAAGCAGATTACTTCTTCTGATAAAGGCTCACGGTCACCTGGGAAAGTAGCGGAGAATCTTCGGTCCCAGTCTCCTGGCACAAAGCCTCTCACAGAACCGTTCACTAGGTCTAGAAGTGCGATAGCATTTGATTCCAGGCCTCGGTCGGCTACTGACAAGAGCGAGAGAAAGAGATCTTTGACGGTGGAGCGGCCCATCGcaatacaaggtacagtcagTACACGCTCATCCATGGGGCCCATCGcaatacaaggtacagtcagTGCACGCTCATCCATGCGGCCCATCGCAATACAAGGAACCCAAGAAAAGCCAAACCCCCAGAGACAGTACTCTTCACCACAAAGTCCAACAAAATCTAGAATACCGCTAATGATCAAATCACCCGCGAAATCAGGGCGCCCCACACCACAGGCGTCCCGCCCAAGACCGAGTACTCAGGACTTTGAGCCACCGCAATTAACCCGCTACTACTCTCAAGATCAAGCAAGGCGGCCTCACAGGACCTGTGAGTGCGGGATGCAAGTGTTGCCTCACAACGCCGACTACACGGCACAGGAATCGTTCACGAAATATGCTACACCACAGGTACCCCAGAACGGCTATGGCGGTATTTCGGAGGACGATTTCAGAACCCCGTTCGACGATTACGTGTATACTTCTGAGGATTCCGCCAGTGTGTTATCGGAGAGCGTCAGTGAGTGCGACTCCCACGTGACTTACAGCGTCAGCACTGGCGAAGTCGCCAACCCTGATTTGCATATTGACCTCACCGAGGGGTACAGAGGGTCCAAACAAAGCAGCGGCGAGACCACGCCCAGTGACGGGGGAGCACCAATCTTGTCAGATGTGGTCAGGGATTACGATTATTTTGACGTAGAGACCGAGTTGCGGTCAACCAGTAGTGACCGGTCACGTGGTTCCACACCGAGCATGGACTTGTTAGAATCACGTGATCCCGTAACGCCTTCATCACATGACCAGGTCGACAGTTTTGAGGAGGGTTATCCACGAGGTTTGAGTATAAAGGAACGCTTGAAAAGCCTTAATGTAGGACAAACCTCCATAAGCCCAACACTGCGTGGTAAGGTTTTCGCTGGCAATGAGGATGATGGTCTTGGTAAAGCCGATAAACCGGACAAAAATATGAAGGATCAAGGTTTTTTGTATGTGGATTATGCCACTCAAGCGCCAGAAGAGAGATCCAAGTTCTTCGATATCGACCGAGAAATGGGCCAAGACAACTCCGCCCCGGGGTCACCGAAAAAAGTCTCTCTCGTAAAATCGCTGATTGGAAGCATCGAGAAACGAAAGAGAAGCGACCCACAGCCTCCAAATCTGAAACAAAAGCAGCAACCAACGGAGCCTCGCACTGGTGGCGAGGTAGTGACAGGATCACGTGACGTTTCGTGGGACTGTGCAGGCACAGCTGGTACTCATAGCGAGCTCGAGCAGGGAGCCATTTCCTCAGCAGTTACGCCTCTTATAATCAAAGAGCCATTTAGTGACCAGGCCTTGATACCCAAAAACGTGGACGAAAATAAGAATATCACGAGAGACTGCGAGCTGCAGATGAAATCACCGAGCGCTACTAGCCTTGAGGATCGACGGCAGGAAGAAGAGGAATTACGGCAATTTGAGGAAAACGAAAATAACTTCATCGTACACGAGTCAAAGCTGAAGGACGTCGACAGCTACGAAGCACATTCGGAGACTCATAAAAACGAGGCTGCTATCGAAAAAAGTCCGAAGAGGTCCGAAACTTTGCCGAAAGATATCGACGTCTTCCCGAGATCTCCAAGGCAATTTTCGCTAGATGAAATGATTGCTGATATGTTGCCAGGAGACTCAAAGAGCGATAGACCTGAGTCGCCACTTAAGCCTCATTTTCAAGCACTAATTTGATTGGCTTAATAAGGTTGTACGACGTGCCCTTGATGAAGTAGAATTATCAGAAAATGGAGATCAACTTTTAACACAGTTACATTATACCAGGCCCGAACCcaggaaggggagggggggttgcctAAAGGGGTTCgcacccccaacccccccccccccccccccccacatacACACAATCGGGACAAGTCCAATTTCGGATTGCATTATATGTGCTATTTTTAggcaaaactaaaaagtgaAGCGTGTGTCATAAATCTATAATTCACGCTtgtttgtagccaaatcccaTAATAAActtcccgtggagatactgcaatgcCTAAAATGTTtcaggggtggtcagatttttatcagtaAAAACCACCTCCACCCCCCAACCCTCCCCGAAGAATTATGtacactttttcggatttcgcacccctccaagaaaaatcctgggtacgggcctgtatccATTAAGTTGCTGCAAATGATTGTATAAATGAGCTGAGTTCATATGACTCGTCCAGCAGCATTTCTCCGACAATCTTATTCTTGAACTGGAGGCAAGTATTCAGATAGTCATCTTATGATATGTGGATGAATTTCAAATATCAAGGCCCGATAATACTCACACTAGCACTGTCCCCCCAGGAGAGTATTGCACGAGTATCAATGATAAAATCATTAAAATAAGCGCGTATATTGCCATGCATAACTCAATCATTTGTGTGGATATCCATATTTCATGTCAGAGAAATTATTCTTATTAAATTTGATAATTTCTTAAGGGTAAAATTTGGCAAACTTTATTGttataaagattttttttttcaaaaagagaGATGACTATTAAGACACACagtgtttttattattgtcGAGCTTAATGtggaaatatttttgtaggttattTAATTGTTGCAGACAATTTGAATGTATTAGTAAAACCAGGAACATTCAGGCCAATGAGacaaaaataccaagtgtATTACCGGCAGGGCAGAGACCCAGTCGAGCTGTCACGCCAggtccgacttgcgtgacgcgTGGTTTCGTAGGCTTTGAATCActatgcaaatgagatgtTCATCTCACTATTGAATGAAATCCGCTTGAATCACGGTGAATGTCATGACATATCAGGCGCGTGTCCCTGGGAAGGGTGGTGGTCATACGCATCAAAAGCAAAGTATTTCACGATCCTTCAACAAGAAATGACCCATATTAGGCGCGGCACAAATGTTAAGAGATTTGGATATTCAAACCAAAAACAAAACCTCTCACGCAAGTCGGATCGCAGGACTTCTCCGTATAATTTTTCCTGTTACTAGGTTAAGTTGCATGGCAACAAACATGGAAGGTATGTTTTGATAAAGCTGTTTTTCTATAA

Protein

Uniprot

Uniprot term	Description
A0A1L8HFX9	GAS2-like protein 2A OS=Xenopus laevis OX=8355 GN=gas2l2.L PE=3 SV=1
A0A1L8H8C0	GAS2-like protein 2B OS=Xenopus laevis OX=8355 GN=gas2l2.S PE=3 SV=1
Q5SSG4	GAS2-like protein 2 OS=Mus musculus OX=10090 GN=Gas2l2 PE=1 SV=1

Pfam domain

Pfam accession	Pfam name	Description	Type	Source
PF02187	GAS2	Growth-Arrest-Specific Protein 2 Domain	Family	Interproscan
PF00307	CH	Calponin homology (CH) domain	Domain	Interproscan

InterPro

InterPro term	Type	Description	Source
IPR036534	Homologous_superfamily	GAR domain superfamily	Interproscan
IPR003108	Domain	GAR domain	Interproscan
IPR001715	Domain	Calponin homology domain	Interproscan
IPR036872	Homologous_superfamily	CH domain superfamily	Interproscan

PANTHER

PANTHER term	Description	Source
PTHR46756	TRANSGELIN	Interproscan

Gene Ontology

GO terms	Category	Description	Source
GO:0008017	Molecular Function	microtubule binding	Interproscan
GO:0005515	Molecular Function	protein binding	Interproscan
GO:0001578	Biological Process	microtubule bundle formation	Interproscan
GO:0001725	Cellular Component	stress fiber	Interproscan
GO:0005737	Cellular Component	cytoplasm	Interproscan
GO:0005884	Cellular Component	actin filament	Interproscan
GO:0008093	Molecular Function	cytoskeletal anchor activity	Interproscan
GO:0031110	Biological Process	regulation of microtubule polymerization or depolymerization	Interproscan
GO:0035371	Cellular Component	microtubule plus-end	Interproscan
GO:0051015	Molecular Function	actin filament binding	Interproscan
GO:0051764	Biological Process	actin crosslink formation	Interproscan
GO:1904825	Biological Process	protein localization to microtubule plus-end	Interproscan

KEGG pathway

KO	Enzyme	Enzyme ID	pathway	mapID	Source
K24627	GAS2, GAS2L; growth arrest-specific protein 2	-	Cytoskeleton proteins	ko04812	deepkoala