Gene detail

Detailed information of XP_048583338.1 in Nematostella vectensis

Genomic Location: NC_064038.1:17215734...17225406
NR annotation: XP_048583338.1, rho GTPase-activating protein gacHH isoform X2 [Nematostella vectensis]

Gene Structure

More details in Jbrowse

Sequence

CDS

Transcript

rna-XM_048727381.1

GGTTTCGTCTTACGAGtaatttgattggttgatgAGCTTGAAAAAGTTATTCACAAAATTTCCCGCCAAAGATTTTTTTAGCTCCGAGTGATCAAGGTTTCGATCAATTCCCAATTTCTTTAACGCATAGCCAATTTTTACATTGTATTTGATAATCATGGGCAACGAAGGATCAGTTCCTGTATCTTATGGCACTAGACTCTTAAATGACGTGAAGGTCGAGTGGAAGAGATCGGGAAAGGACTGTGTTTATTCTCCAAGAGATGGCCATTGTGCAGCCAGCGTTGGATCCAAGTTGTACGTGTTCGGTGGAGTTGCATGGAATGTGACGATCGGAGAAGTTTCTGAGATGAATGAGATGCTAGTGTACGATCTTGAGAGTCAGACGTGGAGCAAGCCTGTTACCAGAGGGGATACACCTTCCTCCAGGTCATCTGCAACTATGTGTTCTGTCGGCAACACGTTATTTATGTTTGGTGGGCTAAGCAGGGACAGTGGCTGGTTGAATGATCTGTATGCATTTAATACAGacTCTATGCAGTGGAAAGCTATAGAAGCAAAAGGgacttacccctccccccgggACAAGTTGGGTTCTGTTGCCATGGGGACCAAGATGCTGATATTTGGAGGGTTCGGTCCAAAGGAGGATGACGAGATGGCTGGGCCTGGAGAGGCGGAGTTTACTTGGTTCAATGACATCTTTGCATTTGATACAGAAAACCTAACATGGAAGAAGTTCATGGTGACTACAGTAGGGTCTCCGACTCCTCGTGCTGCTCACTGCATGTGTGCAGTTGGTTTCAAGGTGGTTATATTTGGAGGGAAGGACAGTATCGCAAGACGTCATGACACTCATATCCTAAATACAGAAAATATGAAGTGGGAAACAGTAAAAACCTCAGGGCGTCAGCCATCACCTCGCTCATTCCACTCCTGTGCAGCTGTGGGCAATCGCATGGTGGTGTTCGGTGGAAGAGGTTTAGCAAATCAACACTTTAATGATCTCCATATCTTTGACGTAGATAAGCAAGAGTGGTTACAACCATCAGTGTCAGGCGCTCTCCCAGCCCCTAGGGGTGTCCACACCATGAGCGCTCTTTGCGGCAACCTGGTGGTGTTCGGAGGGTCATCTGAATTTGACGAGTCTACAATGCAGTGCCAGCAGTATCATAATGATACATTTTTATTATCTGCAGACAAACTCCTCTCTGGGGCATCCCTCGGCCCTGACCCTAATGACAAACCAAAAGAGGTGGTCCCCATGGCAACACCAGTGAATCCAGAGCCTGCCATAGACACAATAGATGAGAACGAAGAAGAGTGGGAGGATACGGAAGAGGATGACTCATCAGGACAGGAACATTGAGTGTAGGACAGTGGGATAAATCAAGTATAGAATAGCATTGTGACAGATGTCATACACCTACTCCGGCTGACAAAGAGACAAGCTTTTCTTGGTTTCCAAGTGAGGTGCACATCTGTACCTTGGCATGGATTTAAATAATTACTTAAATCATGATTTAAGTCAGTACTTTCTATGATCATCATTCCTTCTAAATTTTCAGTCCCAAGGGAGAGGTGGAACAAGAACCCCTTCGTCCTGCCATGTGCTTATGGCTAGGATAGTTCCCACATGGCATAGAACCTATGTATACTAGGATAGTTCCCACATGGCATACAGACCAGCATGTATACTAGGATAGTTCCCACATGGCATAGAACCTATGTATACTAGGATAGTTCCCACATGGCATACAGACCAGCATGTATACTAGGATAGTTCCCACATGGCATAGAACCTATGTATACTAGGATAGTTCCCACATGGCATACAGACCAGCATGTATACTAGGATAGTTCCCACATGGCATAGAACCCATGTATACTAGGATAGTTCCCACATGGCATACAGACCAGCATTTATACTAGGTATCAAAAGGTCCAGCTTTTTGGGTTTGTCAACAAAGTAAAACACCAACAGAGTTAATTTATTAAATGGAACAATTTGTTTTCCTCAATGATTATGGCATTTATAACGtcagattttaaaataaatgaatcAGGTGAACATTTTATTAGTTTTAGAATTTTGGGCGCAACTCCATAAAAAGTTCATTCTAAAGAAACAAACTCGAGTTATCGGGGAGTTTGAGTTTGCTGGAAGTTCAAGTTAGTGAGGAGTTTGAGTTAGTGGGGAGTTCCAGTTATCagggagttcgagttagtAGGGAGCTGGAGTTAGCTGGAAATTCGAGTTAGTGGGGAGTTAGAGTTAATGGGGAGTTCGTGTTATCAGGGTGTTCGAGTTAGTGAGAAGTTTGAGTTAGTGGGGATTTCAAGTTATCGGGGAGTTTGAGTTAGCGGGGAGTTCAAGTTATCGCGGAGTTGGAGTTATCGGGGAGTTCGCGTTATCGGGGGGATTCGGGATTTAGTTTCCACTATTTTTTCAGTAAATTTGGGAATTATTTTACGCGCACTCTCATCTCGTATTTTTCTGCACTTTTGTTTTCgcgcattttttaaattaaatattGGCAGTTTTTATTCTTTCGCGATACAAAATACAGCGGCATGTGCCCGACAAACATCCTGTATATTGATTCTTTGATGACATTGCAGGGAAGTCGCTAAATTAAGTGGTGCTTCGACGGCgccaaattattttttgtacaCTGTACATTATTAGCAGgtttaaaaagaataaaaatcaACCTTTGAAATTTA

Protein

Uniprot

Uniprot term	Description
Q86L99	Rho GTPase-activating protein gacHH OS=Dictyostelium discoideum OX=44689 GN=gacHH PE=3 SV=1
Q8W4K1	tRNA wybutosine-synthesizing protein 2/3/4 OS=Arabidopsis thaliana OX=3702 GN=At4g04670 PE=2 SV=1

Pfam domain

Pfam accession	Pfam name	Description	Type	Source
PF13415	Kelch_3	Galactose oxidase, central domain	Repeat	Interproscan
PF13418	Kelch_4	Galactose oxidase, central domain	Repeat	Interproscan
PF01344	Kelch_1	Kelch motif	Repeat	Interproscan

InterPro

InterPro term	Type	Description	Source
IPR015915	Homologous_superfamily	Kelch-type beta propeller	Interproscan
IPR006652	Repeat	Kelch repeat type 1	Interproscan

PANTHER

PANTHER term	Description	Source
PTHR46093	ACYL-COA-BINDING DOMAIN-CONTAINING PROTEIN 5	Interproscan

Gene Ontology

GO terms	Category	Description	Source
GO:0005515	Molecular Function	protein binding	Interproscan