Genomic Location: NC_064038.1:8832373...8869977
NR annotation: XP_048583509.1, protocadherin Fat 4 isoform X3 [Nematostella vectensis]
| CDS | |||||
| LOC5519930 | |||||
| Transcript |
| rna-XM_048727552.1 |
| Protein |
| XP_048583509.1 |
| Uniprot term | Description |
|---|---|
| Q9H251 | Cadherin-23 OS=Homo sapiens OX=9606 GN=CDH23 PE=1 SV=2 |
| P33450 | Cadherin-related tumor suppressor OS=Drosophila melanogaster OX=7227 GN=ft PE=1 SV=3 |
| Q14517 | Protocadherin Fat 1 OS=Homo sapiens OX=9606 GN=FAT1 PE=1 SV=2 |
| Pfam accession | Pfam name | Description | Type | Source |
|---|---|---|---|---|
| PF19028 | TSP1_spondin | Spondin-like TSP1 domain | Domain | Interproscan |
| PF00028 | Cadherin | Cadherin domain | Domain | Interproscan |
| PF12947 | EGF_3 | EGF domain | Domain | Interproscan |
| PF00090 | TSP_1 | Thrombospondin type 1 domain | Domain | Interproscan |
| InterPro term | Type | Description | Source |
|---|---|---|---|
| IPR036383 | Homologous_superfamily | Thrombospondin type-1 (TSP1) repeat superfamily | Interproscan |
| IPR015919 | Homologous_superfamily | Cadherin-like superfamily | Interproscan |
| IPR000742 | Domain | EGF-like domain | Interproscan |
| IPR044004 | Domain | Spondin-like TSP1 domain | Interproscan |
| IPR002126 | Domain | Cadherin-like | Interproscan |
| IPR000884 | Repeat | Thrombospondin type-1 (TSP1) repeat | Interproscan |
| IPR018097 | Conserved_site | EGF-like calcium-binding, conserved site | Interproscan |
| IPR009030 | Homologous_superfamily | Growth factor receptor cysteine-rich domain superfamily | Interproscan |
| IPR000436 | Domain | Sushi/SCR/CCP domain | Interproscan |
| IPR024731 | Domain | EGF domain | Interproscan |
| IPR000152 | PTM | EGF-type aspartate/asparagine hydroxylation site | Interproscan |
| IPR001881 | Domain | EGF-like calcium-binding domain | Interproscan |
| PANTHER term | Description | Source |
|---|---|---|
| PTHR24026 | FAT ATYPICAL CADHERIN-RELATED | Interproscan |
| GO terms | Category | Description | Source |
|---|---|---|---|
| GO:0005509 | Molecular Function | calcium ion binding | Interproscan |
| GO:0016020 | Cellular Component | membrane | Interproscan |
| GO:0007156 | Biological Process | homophilic cell adhesion via plasma membrane adhesion molecules | Interproscan |
| KO | Enzyme | Enzyme ID | pathway | mapID | Source |
|---|---|---|---|---|---|
| K16669 | FAT4; protocadherin Fat 4 | - | Cell adhesion molecules | ko04515 | deepkoala |
Maintained by Dr. Jiajie She from Prof. Longjun Wu's Lab & Prof. Pei-yuan Qian's Lab
Hong Kong Branch of the Southern Marine Science and Engineering Guangdong Laboratory (Guangzhou)
Hong Kong University of Science and Technology
Clear Water Bay, Kowloon, Hong Kong
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