Gene detail

Detailed information of XP_048584027.1 in Nematostella vectensis

Genomic Location: NC_064038.1:8234378...8245355
NR annotation: XP_048584027.1, uncharacterized protein LOC5519077 [Nematostella vectensis]

Gene Structure

More details in Jbrowse

Sequence

CDS

Transcript

rna-XM_048728070.1

GAGGTCCCCTACTCCACGTGTTTCGAGGGCCAGGAGAAGAGGAAATCAACCTTCTCGCACATTTGTTTGGCTGGAGGACGAAGACAGAGATCGGCCACCGTCGGTTCCGGCAGGCACCGCTAAGGTTAAGTTTCCATCAGATGCCTCTTGGTCCACAGTACTGGACCTAATTCGTCGCGAGTTGCCATGCGTTAGGGACACACAGAGCATCACATTCTACAAAGCTGCAATGACAGGGAATCATCGCCTGATGCCAATTGGTTGCAATCTTGGTGGTCAAGAGATTTGCGACCAATACAGAACCTCGAAAACTAAGGTTTATTTAGGACGAACGAATGATGCACCGCAGACCACTTTATCCACCCTGACAACAACCACCACTACAACCACGTCATCTTCAATTGCGACCCCTTCAACAAGTGGCACCTACACGACGGCGACAACCACTACCACCGTGTCATCTTCGATTGCGACCCCTTCAACCACGATTGTGACATCGCCCTCACCAAGTTTTGACGAGTTATTTATAAGTCGCCAATCATTGCCTATTGTCCCCCAAGTTATAGAAGATGACACAGATGAGGCAATGCATGACTCTGATGAAGATGACCAAGTCTGCGAGGCTGGTCCTATTTTCCATGGAAGTGGGATACAAGTTGGTGTTATTAAGGAGGATGCCAGTGACAGGGGTATATTCCACCCACCAGGCTTGCTTCACTCCTCCCTGGTAGAGTGTATCAGAATGGCGCAGCATGAAAGCGGGACTGCTGAACCTACTTTCCTGCCATTTACATTTAAAGCAGTATTGGGACAAGCACATGACTCATGCCGCGgacttgttattgttttaatatGCAGCAGGCTTTTTTTAAAGCCATGCGAGAAAGAGCTTTTAAGTCACCTTGCTGATATATCCCAATCCTCCAACTCTGCCACACCCATATTTTGGTTAGGGGCGATGAATACAGAATATGGCAAAGATGCTTCAGATTCTTTGGGAGGTGAGCATATCAGGACACCACAAGTGATTGTCTGCTCACCATCTCTTGGACAAGCAGTCCCAACAATTATTGAGCGGTTTGTTGGCGCAGCCGAGTTACGAAAGGAAGCTTTTGAAAGGGCATTACAGTGTATGGGGCGGACACTTGAAGTTTTCAAGACGGAGCGGCTCAGAATGAAGGAAAGAGAACTGCTTCTTCGACAGCAGAAGGATGCACTTGAAGCTTCCCTTTGCAATGACAGGAAAAAGGATCAGCACAGCCAGACGACCATCGTTTCTAAGATGTTTGATACAACTGGCAAGCTCCAAGAGAAGGAGGATGATGTGATGGGGGGACCGGTGGAGCCTCAAAATCTTAACGTACCAGCAGAGGTGTCTCCTGCACATAGTGAGGTGCCACAAGAGGTATTGGACACACAAAATGAGGAAAAAATTAGGAGGCAACGCAAAGAAAGGGTCTGTGCCCCACCCGAGGGTGCAGACATTGTTAAAATAGCCGTCAGAGGCCCTGATGGCAAACTAATAAGGAACTCCTTTTCCAAGCATTCCTGTTTTCAGATGGTCTATGACTGGGCAGGATCCATGGCCATTATGCCTCTACATTTCTCCCTGCATAGGGCTGGAGGAGAAATTGTGAGGCATGATGACCAATTAAAGGGACATGAGACCCTTAACTTTGCTGAAAGGGATCACCAACAAAGTGCACAACTTTTAGGAGATGAGGTTTCTTTCTGTGGAAACTTTCCAATGGAATCTCCTGCGGAAGATACACTAAGAGAGGAGACAGTTGAAACAGCAGGCTGCAGTCAGGTACCAGCAGAGGTGTCTCTGGCAAATGAGGTGGCATCAGAGGTATCAGACACCCAACCTAAGCAAAAACAAGGCGAGCAAgcaaagagaaagagaaagaggGGCAAGGAGagcaaaaaaaggaagaaccacacaaaaaaatgtttagaaaagaaTAGTACTTGTAATAAAAGCATTATTAAAAGCATTAAGCTTAATTCTGTTCCTCATTAAGTAAGTGTGTGGGGTGTTTCAGTTTTACTCCAATTTTAATCtagtaaataatatttaagtTACCTCTTATATCAGTCAACTCCTTCCCTGTTTAGTCGCACGTGCTCTCACTTGGTAAACTAATCTCAGAGAAGGACCCACAAATTTCCTTAAAGTCCCAAAAACCACACACGTTCTTGCAAGCTTACCACCATTTTAGAGACTGGGAACGATCTCTTTTTCACACGGGTAACCCGGATGAAAAAATGCTGCATCGTGAGCAGTTCGTAGTTCATGTTCATCgcaaaaattgtcatttttgacaaaattggtaacttccatataaggaaattaacaaattccttatttggaaaaactgcatgattcttgtcattttttaggctgccgtaccgcaggtgcttcgtaaactttatgaattgtaatcagaagagaaaaacagtgccTGTCACCATCTTTGGtaaatggagaaagtatctgaaaaaaaaactaagattcctcggtaccagttcCTCAAAACgaaaacgttttcttcataaaaAGGAATGGACATATTCTGGAAAAAGTGACGGGCCATTCTCGCGTACATAAACATCAGTatcaattg

Protein

Pfam domain

Pfam accession	Pfam name	Description	Type	Source
PF00789	UBX	UBX domain	Domain	Interproscan

InterPro

InterPro term	Type	Description	Source
IPR029071	Homologous_superfamily	Ubiquitin-like domain superfamily	Interproscan
IPR050730	Family	UBX domain-containing protein	Interproscan
IPR001012	Domain	UBX domain	Interproscan

PANTHER

PANTHER term	Description	Source
PTHR23322	FAS-ASSOCIATED PROTEIN	Interproscan

Gene Ontology

GO terms	Category	Description	Source
GO:0005783	Cellular Component	endoplasmic reticulum	Interproscan
GO:0030433	Biological Process	obsolete ubiquitin-dependent ERAD pathway	Interproscan
GO:0043130	Molecular Function	ubiquitin binding	Interproscan
GO:0005515	Molecular Function	protein binding	Interproscan