Gene detail

Detailed information of XP_048584376.1 in Nematostella vectensis

Genomic Location: NC_064034.1:17023664...17032833
NR annotation: XP_048584376.1, HMG box-containing protein 1 isoform X2 [Nematostella vectensis]

Gene Structure

More details in Jbrowse

Sequence

CDS

Transcript

rna-XM_048728419.1

GGTCCATTATATAGGTCTTTTCGGGGTCTTTTCGTGAACCGCTAAACTGCGATAAGCTGTTTCGCCAAGACAGGCCCGTGCGTGCTCTTACCTAGAGCCAGCTcgtgctgtgattggctatCGACccttgcaatcagcactaatgTCGCGGGGAGTCGAAATCCGTTTGAACTGTTGAATGACCTTCAAAATACTACCccacaaatgacaaagaaaGACAAGTAGAGAATATGTCAATGCTGGTGGATAGCAGAGCTTTCCATGTTACGAATAAAATTGTTTATGGAAGGGCTATGCAGCCGAAGCAAAATCCATATAAACCACATGCTTGTCCGCGCTGTCACAAGTCCTTCAAAAGCTCCAACGGTTTAAAGTATCATAACGGAAAAGCTCATTCCGACAACTACGTGCATGAAATTTCGGCAAATCAAGTAATGAGCAAACCTTCCAAGAAACCGATCCCGCCGGCCCTAGAACTGAGGTCTGGGGTAGACAGTATGTCTCCAGAGATGACTCTTCTAACAGAGTTTGCTCTGATCGCCACAAGCCCACAAAGCCCCTTGATGCAGACTGGGTACGATGAGAGGTTTTGTAACCCTCTTCATCAGGACAGCCCACCACGCCCTGAAGACAGCCCCCCTCCCGGTCTGGTTGACCCGAGAGACATCGACTACGACATACCCAGTGTCGAGAGTGAGTTGAGCACAAGCCCAGGTCCTGATTCTACGACCTATCGCTacgccacccctccccccacagtATGGAACTGCTTCCTAGATGGTACTCGTGTACAGCTCGAGGGTGAGAGTGATTGGAGGTTCGCTGAGGATCTCGGGAATGACGATATCCCACGTGTTTCCTTACCAGAAGAAGGCCTCAAGCTAACCTCGTGCCACCGAGTCGACTTGAACATGGAGGAAAAGGAGTATGTTCTCGCAACTTTCCATTCCACCACCGCCGACCAACCGAGCCTGCGAGCCGAGGTGGCTTGCGGTCATCCGTTCTTTGTCAAAGCGAAAGGCTGGTCGTCCTTCCGGCCCTCCCTGACCGCAGAGCAGTATGGGATCATCTGTCAGACGCTCGCTTGTGGCGACGTGTGCCTACCCTCATCTCACCCTGACGTACTCAAGGCTCTGCGCATGCGTAGAAGCAGTAGCATGTTCGACTTCACAGATGTGGATTCAACGGCCGCTCTGACCCTCAGCTGCATGGCCAAGGTTCGCCAGGAGCATAAAACACGTAAAACCAAACTActctctaccctccccccgcgCATGCGCAAGACGCCGTCCCAACTACAACAACTGAACAAGAGACCAATGAACGCCTTCATGCTATTTGCAAAGCGTTATCGACTGGAGATCACACAAGCCCATCCTGGCAAGGACAACAGAGCTATAAGTGTTATTCTTGGCGACAAATGGAAGTCGATGAAGCAAGAGGAACGAAAGCAGTACGTGATGGAAGCCAAACAACTTGCGGAGGAACACAAAAAGGGTCGCAGTAAGGGCAGTGGCTACAGGAGAGTGTGACAAGCCCTGCTCGACTCAAACATAGTAATATATAGCGTCTTGTCTTCGATGGATTATTTCAGATTGTTCAACGCACTGATTGTGGGTTGTGATGATTTCAGCTTGCTAACAACTCATACACAACCAattgcaagaaaaaaataagctcATTTTCTTAATACTAACGTTCTTCTTAGCCCGTTTCAGCTTCGTGTCACCACTGATTAGAGACTGCAATACATATTGAATGTCTATTTTATTGATTCAAATTTTACCAAGTGATCCTCAAAGTTCTTTCTTTATACCGCatgctttttatttcatcACTGTCGCTGTTCTAGTTACAAAAAATGGGCCAGCTTTTCGGCTATTTATACATGATTTCGGCCCGTTACATTAACGGCGCCATGTTACGTCCTGTTCTATATTTATAGAATAGTATATTGGGTTCTATGGTATCCTTCGAAGTGTTTACTATTATAAGAAATAGAGACTAGTTAGTTATACGTCACGAAATTATCGGCGCCATGTCGCGTTTTGGCGCCATGTCGCGTTTTGGCGCCATGTCGCGTTTTGGCGCCATGTCGCGTTTTGGCGCCATGTCGCGTTTTGGCGCCATGACATGTTTTGGAACTATTGGCGTCATGTTACGTTTTTGCGCTGTGTGACGTACTTTCTACACGTCGTCGCTTGTTGGCCCCATATTAGGTGTTATTATATTAATAGCGCTTCCATGTAAATAGTTTATAGAAGAGTGGGCAAAGCCAAATTTTATCTAATTTTAGCTTTTGCGTGGTTTGCATTATTTTATAATGTAGGTAGTGTAGATATGAAATTGATGAAATAAAACCCGTTtaatcaa

Protein

Uniprot

Uniprot term	Description
Q62661	HMG box-containing protein 1 OS=Rattus norvegicus OX=10116 GN=Hbp1 PE=1 SV=2
Q8R316	HMG box-containing protein 1 OS=Mus musculus OX=10090 GN=Hbp1 PE=1 SV=1
Q2KJ34	HMG box-containing protein 1 OS=Bos taurus OX=9913 GN=HBP1 PE=2 SV=1

Pfam domain

Pfam accession	Pfam name	Description	Type	Source
PF08517	AXH	Ataxin-1 and HBP1 module (AXH)	Family	Interproscan
PF00505	HMG_box	HMG (high mobility group) box	Domain	Interproscan

InterPro

InterPro term	Type	Description	Source
IPR003652	Domain	Ataxin, AXH domain	Interproscan
IPR009071	Domain	High mobility group box domain	Interproscan
IPR036910	Homologous_superfamily	High mobility group box domain superfamily	Interproscan
IPR013087	Domain	Zinc finger C2H2-type	Interproscan
IPR039655	Family	HMG box-containing protein 1	Interproscan
IPR036096	Homologous_superfamily	Ataxin, AXH domain superfamily	Interproscan
IPR036236	Homologous_superfamily	Zinc finger C2H2 superfamily	Interproscan

PANTHER

PANTHER term	Description	Source
PTHR15499	HMG BOX-CONTAINING PROTEIN 1	Interproscan

Gene Ontology

GO terms	Category	Description	Source
GO:0003723	Molecular Function	RNA binding	Interproscan
GO:0005515	Molecular Function	protein binding	Interproscan
GO:0000978	Molecular Function	RNA polymerase II cis-regulatory region sequence-specific DNA binding	Interproscan
GO:0000981	Molecular Function	DNA-binding transcription factor activity, RNA polymerase II-specific	Interproscan
GO:0005634	Cellular Component	nucleus	Interproscan
GO:0006355	Biological Process	regulation of DNA-templated transcription	Interproscan
GO:0006357	Biological Process	regulation of transcription by RNA polymerase II	Interproscan

KEGG pathway

KO	Enzyme	Enzyme ID	pathway	mapID	Source
K21644	HBP1; HMG box transcription factor 1	-	Transcription factors	ko03000	deepkoala