Gene detail

Detailed information of XP_048584410.1 in Nematostella vectensis

Genomic Location: NC_064034.1:7811954...7820273
NR annotation: XP_048584410.1, probable glycoprotein hormone G-protein coupled receptor isoform X1 [Nematostella vectensis]

Gene Structure

More details in Jbrowse

Sequence

CDS

Transcript

rna-XM_048728453.1

GAAGCTGCAAGACGTGCATTAACTCGTTAAATGTCTTAAACGTAGAGTAATTGATATTGTTATCGCGTGACATTTGACTTCCTGTATTGAATAGACTTGCAAGCTTCTACATGTAAAGCAGCGAGCGACAAGCGAGATCTAAGCTCTTGAGTACTTCACATGAAGAAAGCCAGTAGTTGTTATCTTCTTATCATGGCAAATACATGGAGACCACTGTTTACCCTGGTCGTATTTGTCAGCAGTATACAGCAGCTATCGGACGCTGCTAACCGCACATGCGAAGAGAAATGCTCCAAGAAGCATACACTGAGAAATCTTCAAGAGCTTCAGGGTATCGCTAGTCCAAGAAAAGTTTGTGATTTGGATTTATCTGATGGAGGGATAGACTACATTGAGCCCGGAACTTTCCGAAACTTTTCTAATCTAGTCAGTTTGTCTGTAACAAGCAACAAATTGAGTTCCATTTCAAGTGGCGCATTTGCTGGCCTTAACTGTCTGCGATATCTAAACCTCAGCATGAACCGAATCAAGTCATTCGAGGTCAGCAATATTTCAACTGATTTGCCTTCACTTGCTATCCTGGACATGACGGGAAATAACTGGTTGCTAAGCAACGACATCCTTCTTCTCACCAGTCTCCTAGAAATTCGCGGCACAAAGCTAAGCAAGATGTGTTCCGAATGTACCCTTATCAAGGCAAAGGAAATTTCTACAAAACTTGAAAACCTGAAAAAAGGGGAATATCTTATTTACCTTGAAGGTTATCCTTGTCGTGCAAGAGCTTACACTGTCAAGTCACTTCCGAGAACCATCGCCAAATATGGATTTATTAGCAACTGTTTCGAAGAGGGACACAAATGCTTTGAGCAAGAGATACCTTCTGAAGTAACGTACCCATGCTGGGACGTAACAAGACAGGTGGGCGGGTTGAACTACCTATTTGGACCCCTAGCCATTGTCTTGAATCTGTGCGTAATCACCACAACGATGTACTCGAACCGTCTGCGCAAGAATATCGCAATGCTCCTGGTAGCAAACCTCGCCTTTGCGGACTTTTTGAACGGATTGTATTCGTTATCTATCACTGCCGTCCGCCAGCAGAGGACCTTTCAAGAGATGCTCAAGTTCACAAGCACGAGTTGCAGCTACCTTGGGTTTCCATGGATGTTTGCCACTGAGCTTTCCGTCAACACACTCTTCGTTCTAGCAGTAGAGAGGTTTTTATCCATCGTGTACAGCACGAAGCCTCGTTATCGCTTGATGTTGAGGTCTTGCGTGGTCGTTATTGCCGTAATTTGGATATACTCTCTTTTGCTTGCTGTCCTCCCACTAGTAGGGGTCGCAGATTATTCAATAACTCTGTTTTGTGTGCCGATTTACCCAGTCAAGTCTATCCCGGCGCAGTTCTGGTTCTCTTTCTACGTCACCGGTACCGTTGCGATTACGTACCTCGTCACCATTCCCCTATACGTAAAACTCTATCGCGCGGTCAAGAAGTCTGGACTGCGCACGGGCAAACGCAATGACGTCACGCTTGCAAAGCGAATCTTCATTCTTGTCATGTGCAAcatgttctttttctttttgccgGTTGCGATTTCTCTTATATGGTCATGGTCTGGGACCGTTCGTTCGGTTTCTCGAACTGCCACCGATGTCTTGACGTCAGCGTTCTCGATCGTTTGCCTCACAATTTCAAGTGCAATAAACCCAGGGTTGTATGCATTCCAGAGTAGCTCTTTCCGAGAAGAGCTGAGGTCTTTGTACCGTAGAGTTTTCGGAAAGAGGATAGGTTTCCGAGGTGTTGGCGAAAGCAGCGCGAGCGGTCCTTCTACAACCGTAACACGTGATCAGTCGAGGCAGGATACGTCAGGTATATGTCTTGAAGTCGTGAAGGCCGAGGACTTACGATAGGCTTCCGAAGGATTGGCGGAAGCATTAATCACGAGATTCGTCTACATCCTGTGTCACACTTAGGGTTGACGCGTTCGGTGTATGTTCCCAAgtgtaaagaagaaaataccACGTAAAACACGCACAGTCAAATAAACTCTAAGTAAAAACAAGTCATTCGATGTCGAAATAAGGAAACAAAAAGATATGTCATGTTTTTAAGCCTAAGAAATTATCATCGGATGACAAAAGTGAAATataaaatggaaataaaagtacaatattttttacagCATTTGCATAATTGATATTACATAAAGCATTTCTAAAAGATGCTTATATCTCATGGTCATAATGAAATAAATTCAAATAATATTG

Protein

Uniprot

Uniprot term	Description
P35409	Probable glycoprotein hormone G-protein coupled receptor OS=Anthopleura elegantissima OX=6110 PE=2 SV=1
P30730	Lutropin-choriogonadotropic hormone receptor OS=Mus musculus OX=10090 GN=Lhcgr PE=2 SV=1
P22888	Lutropin-choriogonadotropic hormone receptor OS=Homo sapiens OX=9606 GN=LHCGR PE=1 SV=4

Pfam domain

Pfam accession	Pfam name	Description	Type	Source
PF00001	7tm_1	7 transmembrane receptor (rhodopsin family)	Family	Interproscan
PF13855	LRR_8	Leucine rich repeat	Repeat	Interproscan

InterPro

InterPro term	Type	Description	Source
IPR001611	Repeat	Leucine-rich repeat	Interproscan
IPR000276	Family	G protein-coupled receptor, rhodopsin-like	Interproscan
IPR003591	Repeat	Leucine-rich repeat, typical subtype	Interproscan
IPR032675	Homologous_superfamily	Leucine-rich repeat domain superfamily	Interproscan
IPR017452	Domain	GPCR, rhodopsin-like, 7TM	Interproscan

PANTHER

PANTHER term	Description	Source
PTHR24372	GLYCOPROTEIN HORMONE RECEPTOR	Interproscan

Gene Ontology

GO terms	Category	Description	Source
GO:0005515	Molecular Function	protein binding	Interproscan
GO:0004930	Molecular Function	G protein-coupled receptor activity	Interproscan
GO:0007186	Biological Process	G protein-coupled receptor signaling pathway	Interproscan
GO:0016020	Cellular Component	membrane	Interproscan
GO:0005886	Cellular Component	plasma membrane	Interproscan
GO:0005887	Cellular Component	plasma membrane	Interproscan
GO:0007189	Biological Process	adenylate cyclase-activating G protein-coupled receptor signaling pathway	Interproscan
GO:0007190	Biological Process	activation of adenylate cyclase activity	Interproscan
GO:0008528	Molecular Function	G protein-coupled peptide receptor activity	Interproscan
GO:0009755	Biological Process	hormone-mediated signaling pathway	Interproscan

KEGG pathway

KO	Enzyme	Enzyme ID	pathway	mapID	Source
K04247	FSHR; follicle stimulating hormone receptor	-	G protein-coupled receptors	ko04030	deepkoala