Gene detail

Detailed information of XP_048584431.1 in Nematostella vectensis

Genomic Location: NC_064039.1:12948106...12965625
NR annotation: XP_048584431.1, mediator of RNA polymerase II transcription subunit 24 [Nematostella vectensis]

Gene Structure

More details in Jbrowse

Sequence

CDS

LOC5521060

ATGGCGGCCGAGAAGAAGGCTTTGTCTGTTTTGATAAAAGCTTGGAAAGAAAGATGGACGCCGCTTCAATGGCTGGTAGAGATAAGAAAAACAGGTGACAACAAATGCCACAGAGGGCTTGCCGAATGTCTCATTCAGCAGTCTACGTTTGGCAGCACCCCAAACTCACTCATTCTCTCCTATTTACAACACGGGATCACAGCGGAGCTGATTCCTTGCTCAGACACACTCATAGCTATCCAACAGTTTCAAAACATCAATAAGCATAGATGCCTTACTGCTCTTCTAAACTTGATGTTGGGATTTGTTCCTAATATGAGCTGTCCAAATGATGAAGAAGAAAGCCTGAAGCTTGCTGTTGCCATGTTAAAGGCTGTGTATTGGCTGCTTATAGTAGCCATCAACTTATTAAAGCTAGCCAGAGAGGCTGCAAGAGATAATGATGTGATGATGCAGTACCACATCAACAACACCACTAAGTGCCTCAAGGTGTTTGCGTACATGATGGGCTCGGCTACCTACAAGAGCTTAATCATTGTCGGCAAGATGGAGGAACAGGCTATTGCTGCAGAGCTTGATTGCCAATTCCAGGCTCTTATGAAGGAGTATTTTCTCCTTACCCAGTCTGAAGGTGCAATACCTGAGATCCAAATGCACATCAAAGATCTCATGATCAACTTTAACAGATTGCACAATCTAACCCCCATGAACGGGTGCAGTGACCGCACCCCTGGGCCACTCCCTAACCTAATGGTCCAAACCATTATCCAACTACAGAACACTGTTTATCCTACTGACACACCAGAGCAACTTGCTGATGTTTTAGAATCACTTTTGAAAGTGCAGAACATCACAAGATACCAGTTGTATCTTGAGTCAATCCGTGCTGCACTGGTTGGCCTCTTGGCGGCTGATTCAACATCTATGCAGGAATCCCTGTGGACAGGCTTTTTCATTTTCAAATTACCCAAGGTTTTCAGTCTTCTGGAGTCTAGGCTACAGAGCCAAGCCCAGGTAACCCCAGGCAACGAACACGGCACAGTGCTAGCAGTCCTACAGCAACTGAAGAACTTTACTCCATTACTCAACGAGGTGGATCAGAAATGCAGCTGTGATATCTTTGGTGAGTTCATTCACCAGTACTCTAAGTATGCCCCACCGCAAGTTGCAGATAGGCTTCAACAGATCGCTGATCAGCGGGAGTCCCTCATGGATGAAGAATCTTCCCCAGGGGGAGCTACATATCAACCAGTCAGACTACTCATAGATGCTGAAACCAGAGTTAGGGATGTGCTTCAGGTACTAGAAGCCCCATCTCGGTCTATGGATGACAAGTTTCTGACACAGCTAAGCTCATTGTTCAGTTTGATGCACTCTCGTTGGAAGATGGTAGCAGTTGCCAGTATGGGGCGGATGCAGGGGATGGTCGCTGGACTAATAAGAATCACTAAAGAGACAGAGCACCCAAGTGACGATGACGAGGACATGAAGTCATCCGAACTGCGAGGGGATCTCTTTAATGCTGCCTTTATTATACTGTGCCACATCGGCCAAGTCTTTGGAAGAAAGGTAATCGTGGATGCCGCACGAGCTTATGGTCTGGAGCAAGCGTTTGTAACGCGCTGGATATCGTCGCACATTCCCGAGTGTGATAAATCACGCACGTTCTCCCCCGATGCCCAACACAAACCAGACCCGGCAACTGTCACGCTCCTTCTTCAACAATTCTTTACCAAGGGACCATTCACCGGTGAGGCTCGCTGGGACAAGTTGTGCCTGGATGTACCCAACGCTATGCACGAGATGCTCAAAGCCGCACAGTTCGAATCCCAAGGCGCCTCTCCCGAAATCGTACAGAAATTATGCGAGAGCATCAAGTATGAGGTCCCCGCCTGGGCTATCTGCATCTGTGCGTGGTGTTGCGGCCACACAAATGCGCTAAGGATAGAAGAGCGAGAATTCCTGACGGGGGAGGGGGAGAGGGGAGACGAGAGGCCTGTTAACCCAGGGCTGCTTGGGTATCTATTGACGCCCATGAACCCAAAAGGACTTCCTCAAACCTTCACAGACAGATGCTCCATGATGCTTGCCGTGATGCGAGAGATGGTGGTCAGTATAGAGCGCAAAGATGACAAGCACAGCGAAGAATCCCTTGTTCCACCTAATTCCACAGTGTCCAAGGCCATGAGTGAGTTGCTCGTGGAAGTCGTGAAGAGCAAGAGCCTCGATATTCACCGACTCCACAAGTTCAAGCGCTTCCTCATCTTAGGCGGACCGCGGTGGTTCTGCCGAGTCATCATCAAGGAGATGCTGGCACTCACGAGGCAAGAGGACATGAATACTGCAGCGGACGTGGGGAGCTGTCTAATGTTTCTCGATGCCGATGAGCTGATTCCTGCGTTACTCTGTCACGCAATCCCCACTTGCCTGCGTCACGGCAGGGCTAACGTTCTCCTTCAAGACCCCAAGGGCCAGGGCCTGGCTCGTCTCGCGGCGCACACTTTGGAGCTGGGATGGGTGCGTCAGTATGGATATGACAGAGAGCGCGGGAACAACTGTGATATCGCTCAGCACAGTCCTTCGAAAATGCAGAAGATGGACACGAATAGCTCGGGCCAGTCCTCCTCGGTAGTGCAGGATGCTTTAGTGTTATTTTGCGAGGAGCTTGTCGCTGTGGTAGGTGAGTACAAGGTGGGACCAGTCGCCGGCGTCTTACGAGCTTTTCTGCAGCAGACTGCCAACTGTACGAATCACGTGACTGGCCCTGTACTCGCCTGCTTGCCCACGCACTTGACTCAGAAGCTGTTACAGCTCGCTCCTGTCGTTTGCTCTTCGCCTGACGTCATCCTAGGCATCTGCAGCATGCAGAACACTGAAGGACGCAAGCTGTGCGCGGGAGTCCTGTGTCAGGGATTACACAGCGAGACTAGATAG

Transcript

rna-XM_048728474.1

GCGGATATTGTGCTAATGCAATATGGCGGCCGAGAAGAAGGCTTTGTCTGTTTTGATAAAAGCTTGGAAAGAAAGATGGACGCCGCTTCAATGGCTGGTAGAGATAAGAAAAACAGGTGACAACAAATGCCACAGAGGGCTTGCCGaATGTCTCATTCAGCAGTCTACGTTTGGCAGCACCCCAAACTCACTCATTCTCTCCTATTTACAACACGGGATCACAGCGGAGCTGATTCCTTGCTCAGACACACTCATAGCTATCCAACAGtTTCAAAACATCAATAAGCATAGATGCCTTACTGCTCTTCTAAACTTGATGTTGGGATTTGTTCCTAATATGAGCTGTCCAAATGATGAAGAAGAAAGCCTGAAGCTTGCTGTTGCCATGTTAAAGGCTGTGTATTGGCTGCTTATAGTAGCCATCAACTTATTAAAGCTAGCCAGAGAGGCTGCAAGagataatgatgtgatgatgcaGTACCACATCAACAACACCACTAAGTGCCTCAAGGTGTTTGCGTACATGATGGGCTCGGCTACCTACAAGAGCTTAATCATTGTCGGCAAGATGGAGGAACAGGCTATTGCTGCAGAGCTTGATTGCCAATTCCAGGCTCTTATGAAGGAGTATTTTCTCCTTACCCAGTCTGAAGGTGCAATACCTGAGATCCAAATGCACATCAAAGATCTCATGATCAACTTTAACAGATTGCACAATCTAACCCCCATGAACGGGTGCAGTGACCGCACCCCTGGGCCACTCCCTAACCTAATGGTCCAAACCATTATCCAACTACAGAACACTGTTTATCCTACTGACACACCAGAGCAACTTGCTGATGTTTTAGAATCACTTTTGAAAGTGCAGAACATCACAAGATACCAGTTGTATCTTGAGTCAATCCGTGCTGCACTGGTTGGCCTCTTGGCGGCTGATTCAACATCTATGCAGGAATCCCTGTGGACAGgctttttcattttcaaaTTACCCAAGGTTTTCAGTCTTCTGGAGTCTAGGCTACAGAGCCAAGCCCAGGTAACCCCAGGCAACGAACACGGCACAGTGCTAGCAGTCCTACAGCAACTGAAGAACTTTACTCCATTACTCAACGAGGTGGATCAGAAATGCAGCTGTGATATCTTTGGTGAGTTCATTCACCAGTACTCTAAGTATGCCCCACCGCAAGTTGCAGATAGGCTTCAACAGATCGCTGATCAGCGGGAGTCCCTCATGGATGAAGAATCTTCCCCAGGGGGAGCTACATATCAACCAGTCAGACTACTCATAGATGCTGAAACCAGAGTTAGGGATGTGCTTCAGGTACTAGAAGCCCCATCTCGGTCTATGGATGACAAGTTTCTGACACAGCTAAGCTCATTGTTCAGTTTGATGCACTCTCGTTGGAAGATGGTAGCAGTTGCCAGTATGGGGCGGATGCAGGGGATGGTCGCTGGACTAATAAGAATCACTAAAGAGACAGAGCACCCAAGTGACGATGACGAGGACATGAAGTCATCCGAACTGCGAGGGGATCTCTTTAATGCTGCCTTTATTATACTGTGCCACATCGGCCAAGTCTTTGGAAGAAAGGTAATCGTGGATGCCGCACGAGCTTATGGTCTGGAGCAAGCGTTTGTAACGCGCTGGATATCGTCGCACATTCCCGAGTGTGATAAATCACGCACGTTCTCCCCCGATGCCCAACACAAACCAGACCCGGCAACTGTCACGCTCCTTCTTCAACAATTCTTTACCAAGGGACCATTCACCGGTGAGGCTCGCTGGGACAAGTTGTGCCTGGATGTACCCAACGCTATGCACGAGATGCTCAAAGCCGCACAGTTCGAATCCCAAGGCGCCTCTCCCGAAATCGTACAGAAATTATGCGAGAGCATCAAGTATGAGGTCCCCGCCTGGGCTATCTGCATCTGTGCGTGGTGTTGCGGCCACACAAATGCGCTAAGGATAGAAGAGCGAGAATTCCTgacgggggagggggagaggggagacgAGAGGCCTGTTAACCCAGGGCTGCTTGGGTATCTATTGACGCCCATGAACCCAAAAGGACTTCCTCAAACCTTCACAGACAGATGCTCCATGATGCTTGCCGTGATGCGAGAGATGGTGGTCAGTATAGAGCGCAAAGatgacAAGCACAGCGAAGAATCCCTTGTTCCACCTAATTCCACAGTGTCCAAGGCCATGAGTGAGTTGCTCGTGGAAGTCGTGAAGAGCAAGAGCCTCGATATTCACCGACTCCACAAGTTCAAGCGCTTCCTCATCTTAGGCGGACCGCGGTGGTTCTGCCGAGTCATCATCAAGGAGATGCTGGCACTCACGAGGCAAGAGGACATGAATACTGCAGCGGACGTGGGGAGCTGTCTAATGTTTCTCGATGCCGATGAGCTGATTCCTGCGTTACTCTGTCACGCAATCCCCACTTGCCTGCGTCACGGCAGGGCTAACGTTCTCCTTCAAGACCCCAAGGGCCAGGGCCTGGCTCGTCTCGCGGCGCACACTTTGGAGCTGGGATGGGTGCGTCAGTATGGATATGACAGAGAGCGCGGGAACAACTGTGATATCGCTCAGCACAGTCCTTCGAAAATGCAGAAGATGGACACGAATAGCTCGGGCCAGTCCTCCTCGGTAGTGCAGGATGCTTTAGTGTTATTTTGCGAGGAGCTTGTCGCTGTGGTAGGTGAGTACAAGGTGGGACCAGTCGCCGGCGTCTTACGAGCTTTTCTGCAGCAGACTGCCAACTGTACGAATCACGTGACTGGCCCTGTACTCGCCTGCTTGCCCACGCACTTGACTCAGAAGCTGTTACAGCTCGCTCCTGTCGTTTGCTCTTCGCCTGACGTCATCCTAGGCATCTGCAGCATGCAGAACACTGAAGGACGCAAGCTGTGCGCGGGAGTCCTGTGTCAGGGATTACACAGCGAGACTAGATAGCACGGACTGTCTTTTGAGTGTCACGTGATAGCAGATAACACGGATACAGTATCACGGCCACGTAGGACAAGATAACACAGATTCATAGAGAGTGACATGATACCCTGAGTCCAGTGAGCAATGAAATGTGTGTCACGTTGGACAAGGAAGCATGGACATGTAGTATGAAGCGTCGTGTTGGGAGGGGTTTTGTGAGAGTAAAGTGTACTCTTGGTTAAGCCGAAGATTATCGTGTAAATATTGtacgaaaaataaatagattaTCACAGCTTATGCGCTGTGTCTGGACTCTACATAGAAatagcctacttgtaggctttgatagtttttcctgcacgaaaaccccgaaaacacaAAGGCGGCCGTGGTATGTGAACttcgtgttttcggggttttcatGCCGGAAAAATGGAACAATCGTTTTaacaatgtaaacaataattgAATATTGAATATACGCATCATCTATTTTACCAATGAATAACAGTATTACTAA

Protein

Pfam domain

Pfam accession	Pfam name	Description	Type	Source
PF11277	Med24_N	Mediator complex subunit 24 N-terminal	Family	Interproscan

InterPro

InterPro term	Type	Description	Source
IPR021429	Family	Mediator complex, subunit Med24,	Interproscan

PANTHER

PANTHER term	Description	Source
PTHR12898	MEDIATOR OF RNA POLYMERASE II TRANSCRIPTION SUBUNIT 24	Interproscan

Gene Ontology

GO terms	Category	Description	Source
GO:0003712	Molecular Function	transcription coregulator activity	Interproscan
GO:0016592	Cellular Component	mediator complex	Interproscan

KEGG pathway

KO	Enzyme	Enzyme ID	pathway	mapID	Source
K15167	MED24; mediator of RNA polymerase II transcription subunit 24	-	Transcription machinery	ko03021	deepkoala