Genomic Location: NC_064039.1:13937516...13951920
NR annotation: XP_048584752.1, sodium-driven chloride bicarbonate exchanger isoform X2 [Nematostella vectensis]
Species Nematostella vectensis · all data for this species · gene families
| CDS |
| LOC116614753 |
| Transcript |
| rna-XM_048728795.1 |
| Protein |
| XP_048584752.1 |
| UniProt accession | Description |
|---|---|
| Q32LP4 | Sodium-driven chloride bicarbonate exchanger OS=Bos taurus OX=9913 GN=SLC4A10 PE=2 SV=1 |
| Q6U841 | Sodium-driven chloride bicarbonate exchanger OS=Homo sapiens OX=9606 GN=SLC4A10 PE=1 SV=1 |
| Q5DTL9 | Sodium-driven chloride bicarbonate exchanger OS=Mus musculus OX=10090 GN=Slc4a10 PE=1 SV=2 |
| Family type | Membership / link |
|---|---|
| Orthogroup (gene family) | OG0000857 (this species only) · gene tree & orthology |
| Pfam accession | Pfam name | Description | Type | Source |
|---|---|---|---|---|
| PF00955 all species → | HCO3_cotransp | HCO3- transporter family | Family | Interproscan |
| PF07565 all species → | Band_3_cyto | Band 3 cytoplasmic domain | Domain | Interproscan |
| InterPro term | Type | Description | Source |
|---|---|---|---|
| IPR016152 all species → | Homologous_superfamily | Phosphotransferase/anion transporter | Interproscan |
| IPR003020 all species → | Family | Bicarbonate transporter, eukaryotic | Interproscan |
| IPR011531 all species → | Domain | Bicarbonate transporter-like, transmembrane domain | Interproscan |
| IPR003024 all species → | Family | Sodium bicarbonate cotransporter | Interproscan |
| IPR013769 all species → | Domain | Band 3 cytoplasmic domain | Interproscan |
| PANTHER term | Description | Source |
|---|---|---|
| PTHR11453 all species → | ANION EXCHANGE PROTEIN | Interproscan |
| GO term | Category | Description | Source |
|---|---|---|---|
| GO:0005452 all species → | Molecular Function | solute:inorganic anion antiporter activity | Interproscan |
| GO:0005886 all species → | Cellular Component | plasma membrane | Interproscan |
| GO:0006820 all species → | Biological Process | monoatomic anion transport | Interproscan |
| GO:0008510 all species → | Molecular Function | sodium:bicarbonate symporter activity | Interproscan |
| GO:0015701 all species → | Biological Process | bicarbonate transport | Interproscan |
| GO:0016020 all species → | Cellular Component | membrane | Interproscan |
| GO:0022857 all species → | Molecular Function | transmembrane transporter activity | Interproscan |
| GO:0050801 all species → | Biological Process | monoatomic ion homeostasis | Interproscan |
| GO:0051453 all species → | Biological Process | regulation of intracellular pH | Interproscan |
| GO:0055085 all species → | Biological Process | transmembrane transport | Interproscan |
| GO:0008509 all species → | Molecular Function | monoatomic anion transmembrane transporter activity | Interproscan |
| KO | Enzyme | Enzyme ID | Pathway | Map ID | Source |
|---|---|---|---|---|---|
| K13861 | SLC4A10, NCBE; solute carrier family 4 (sodium bicarbonate transporter), member 10 | - | Transporters | ko02000 | deepkoala |
Transcript abundance of XP_048584752.1 across 48 RNA-seq samples of Nematostella vectensis. This gene has no row in the species' RNA-seq expression matrix, so every value below is shown as zero — the matrix simply does not cover this transcript. Values are TPM (transcripts per million) from the StringTie quantification; one bar is one sample, grouped and coloured by condition, sorted by expression within each group.
| Condition | Samples | TPM > 0 | Mean TPM | Max TPM | Mean, relative to max |
|---|---|---|---|---|---|
| whole 6 week old aboral regenerate · regenerate 96hpa | 3 | 0 | 0.00 | 0.00 | |
| whole 6 week old aboral regenerate · regenerate 144hpa | 3 | 0 | 0.00 | 0.00 | |
| whole 6 week old aboral regenerate · regenerate 0hpa | 3 | 0 | 0.00 | 0.00 | |
| whole 6 week old aboral regenerate · regenerate 2hpa | 3 | 0 | 0.00 | 0.00 | |
| whole 6 week old aboral regenerate · regenerate uncut | 3 | 0 | 0.00 | 0.00 | |
| whole 6 week old aboral regenerate · regenerate 4hpa | 3 | 0 | 0.00 | 0.00 | |
| whole 6 week old aboral regenerate · regenerate 120hpa | 3 | 0 | 0.00 | 0.00 | |
| whole 6 week old aboral regenerate · regenerate 36hpa | 3 | 0 | 0.00 | 0.00 | |
| whole 6 week old aboral regenerate · regenerate 24hpa | 3 | 0 | 0.00 | 0.00 | |
| whole 6 week old aboral regenerate · regenerate 20hpa | 3 | 0 | 0.00 | 0.00 | |
| whole 6 week old aboral regenerate · regenerate 16hpa | 3 | 0 | 0.00 | 0.00 | |
| whole 6 week old aboral regenerate · regenerate 72hpa | 3 | 0 | 0.00 | 0.00 | |
| whole 6 week old aboral regenerate · regenerate 60hpa | 3 | 0 | 0.00 | 0.00 | |
| whole 6 week old aboral regenerate · regenerate 48hpa | 3 | 0 | 0.00 | 0.00 | |
| whole 6 week old aboral regenerate · regenerate 8hpa | 3 | 0 | 0.00 | 0.00 | |
| whole 6 week old aboral regenerate · regenerate 12hpa | 3 | 0 | 0.00 | 0.00 |
Source: CnidoSite RNA-seq expression matrices (NVECT_TPM,
StringTie quantification over 48 runs), joined to SRA sample
metadata. Samples whose tissue/treatment is not recorded in the source metadata are grouped
by the descriptor carried in the expression matrix itself.
