Genomic Location: NC_064039.1:8205206...8240141
NR annotation: XP_048584841.1, myoferlin isoform X3 [Nematostella vectensis]
Species Nematostella vectensis · all data for this species · gene families
| CDS |
| LOC5508341 |
| Transcript |
| rna-XM_048728884.1 |
| Protein |
| XP_048584841.1 |
| UniProt accession | Description |
|---|---|
| Q9NZM1 | Myoferlin OS=Homo sapiens OX=9606 GN=MYOF PE=1 SV=1 |
| Q69ZN7 | Myoferlin OS=Mus musculus OX=10090 GN=Myof PE=1 SV=2 |
| O75923 | Dysferlin OS=Homo sapiens OX=9606 GN=DYSF PE=1 SV=1 |
| Family type | Membership / link |
|---|---|
| Orthogroup (gene family) | OG0000314 (this species only) |
| Pfam accession | Pfam name | Description | Type | Source |
|---|---|---|---|---|
| PF08150 all species → | FerB | FerB (NUC096) domain | Domain | Interproscan |
| PF08151 all species → | FerI | FerI (NUC094) domain | Domain | Interproscan |
| PF08165 all species → | FerA | FerA (NUC095) domain | Domain | Interproscan |
| PF00168 all species → | C2 | C2 domain | Domain | Interproscan |
| PF16165 all species → | Ferlin_C | Ferlin C-terminus | Family | Interproscan |
| InterPro term | Type | Description | Source |
|---|---|---|---|
| IPR000008 all species → | Domain | C2 domain | Interproscan |
| IPR012561 all species → | Domain | Ferlin B-domain | Interproscan |
| IPR006614 all species → | Domain | Peroxin/Ferlin domain | Interproscan |
| IPR037722 all species → | Domain | Ferlin, third C2 domain | Interproscan |
| IPR035892 all species → | Homologous_superfamily | C2 domain superfamily | Interproscan |
| IPR012968 all species → | Domain | FerIin domain | Interproscan |
| IPR037724 all species → | Domain | Ferlin, fifth C2 domain | Interproscan |
| IPR037720 all species → | Domain | Ferlin, second C2 domain | Interproscan |
| IPR012560 all species → | Domain | Ferlin A-domain | Interproscan |
| IPR037726 all species → | Domain | Ferlin, first C2 domain | Interproscan |
| IPR037725 all species → | Domain | Ferlin, sixth C2 domain | Interproscan |
| IPR037723 all species → | Domain | Ferlin, fourth C2 domain | Interproscan |
| IPR037721 all species → | Family | Ferlin family | Interproscan |
| IPR032362 all species → | Domain | Ferlin, C-terminal domain | Interproscan |
| PANTHER term | Description | Source |
|---|---|---|
| PTHR12546 all species → | FER-1-LIKE | Interproscan |
| GO term | Category | Description | Source |
|---|---|---|---|
| GO:0016020 all species → | Cellular Component | membrane | Interproscan |
| GO:0007009 all species → | Biological Process | plasma membrane organization | Interproscan |
| KO | Enzyme | Enzyme ID | Pathway | Map ID | Source |
|---|---|---|---|---|---|
| K22125 | MYOF; myoferlin | - | Membrane trafficking | ko04131 | deepkoala |
Transcript abundance of XP_048584841.1 across 48 RNA-seq samples of Nematostella vectensis. This gene has no row in the species' RNA-seq expression matrix, so every value below is shown as zero — the matrix simply does not cover this transcript. Values are TPM (transcripts per million) from the StringTie quantification; one bar is one sample, grouped and coloured by condition, sorted by expression within each group.
| Condition | Samples | TPM > 0 | Mean TPM | Max TPM | Mean, relative to max |
|---|---|---|---|---|---|
| whole 6 week old aboral regenerate · regenerate 96hpa | 3 | 0 | 0.00 | 0.00 | |
| whole 6 week old aboral regenerate · regenerate 144hpa | 3 | 0 | 0.00 | 0.00 | |
| whole 6 week old aboral regenerate · regenerate 0hpa | 3 | 0 | 0.00 | 0.00 | |
| whole 6 week old aboral regenerate · regenerate 2hpa | 3 | 0 | 0.00 | 0.00 | |
| whole 6 week old aboral regenerate · regenerate uncut | 3 | 0 | 0.00 | 0.00 | |
| whole 6 week old aboral regenerate · regenerate 4hpa | 3 | 0 | 0.00 | 0.00 | |
| whole 6 week old aboral regenerate · regenerate 120hpa | 3 | 0 | 0.00 | 0.00 | |
| whole 6 week old aboral regenerate · regenerate 36hpa | 3 | 0 | 0.00 | 0.00 | |
| whole 6 week old aboral regenerate · regenerate 24hpa | 3 | 0 | 0.00 | 0.00 | |
| whole 6 week old aboral regenerate · regenerate 20hpa | 3 | 0 | 0.00 | 0.00 | |
| whole 6 week old aboral regenerate · regenerate 16hpa | 3 | 0 | 0.00 | 0.00 | |
| whole 6 week old aboral regenerate · regenerate 72hpa | 3 | 0 | 0.00 | 0.00 | |
| whole 6 week old aboral regenerate · regenerate 60hpa | 3 | 0 | 0.00 | 0.00 | |
| whole 6 week old aboral regenerate · regenerate 48hpa | 3 | 0 | 0.00 | 0.00 | |
| whole 6 week old aboral regenerate · regenerate 8hpa | 3 | 0 | 0.00 | 0.00 | |
| whole 6 week old aboral regenerate · regenerate 12hpa | 3 | 0 | 0.00 | 0.00 |
Source: CnidoSite RNA-seq expression matrices (NVECT_TPM,
StringTie quantification over 48 runs), joined to SRA sample
metadata. Samples whose tissue/treatment is not recorded in the source metadata are grouped
by the descriptor carried in the expression matrix itself.
