Gene detail

Detailed information of XP_048584978.1 in Nematostella vectensis

Genomic Location: NC_064039.1:13527774...13536779
NR annotation: XP_048584978.1, uncharacterized WD repeat-containing protein alr2800 [Nematostella vectensis]

Gene Structure

More details in Jbrowse

Sequence

CDS

Transcript

rna-XM_048729021.1

AGGACTGGCACTACTATGCTCTGGTTTCGTAGCGCGAAATCAAACTCCACACCACAACAAAAAATTGAGCCGAAAATGCGACTTGCAGCGCTAGATAAACCATTATCAAtcattttaatttgaataGCTAGTTTGTGGTCTCTCTGGTTACTTTTTTATGTTGTATTGTTGGTGGTCTTAGATCAAAATGTCGGCTGGGAGAAAGCGTCTTGAAGACGCTTTGCAAGCGGGAAAAGATATAGAGAGCGACGAAAGccCTCCCATAAGAGACCTAAGTGTGCCCAAAGTGACAGCAATAAAGGATCTTGACTTTGGCGATATCATGGGGGTGTTCAGTGTTCACCTCTCGCCACGTGATCAGTATCTTGCCGCAGGGTGTGGTAATGGTGCTGTCCAGGTGTACTCTTGTGATACTGGGAAGAAGAGGAGGCCACTAAAGCATGGCTCACTCTATGGGCTTCCAGTCACTACCGTCAAATTCTTCCCCTTCAAGGATGACAGGCTGATGTCAACAACATCTGATGGGACCATAACCTGTTGGGACCTGGATAACTGGTCCCATATGAAGTCTGTAGATGAGCCCCACAATGAAATTAGCACCTTGGACTTTTCCCATGATGGCAAGATCTTTGCCACAGCTGGAAAGGACAGAAAGGTGCGAGTATACGACAGTGACACCATGCAGGTCAAGTTGACCTTTGCAGGATCTGAGGCAACTGAGCCTGCCAGAGATGTCAGCATGATTGTACCTGAGGGTGGGCACGGAAAGAAGGTATTTGGTCTGCGCTTTCATCCTTTTGACGACAATGTGTTCTTAACTGGAGGATGGGATCGCTGCCTTaagATATGGGATGTCCGAGTTGACCATGTGATCCGCAGCATTCATGGTCCATACATCTGTGGAGATGGTATTGATATATGTCAGGATGAGGTGATGACAGCATCGTGGCTGCACCAGAAAGCTCTGCAGATATGGGATTATGGCAGTGGTGAGCTGATAGAAAATGTCCCATTTCCATGCGGGGAGCATGGAGAGTTCCTGTATGTCGGAAGATTTGTAAATAGCCAAGTTGTTGTCGCTGGTGGCAGCGGCACTAAGGATGTCAAAATATTAACCAGGAAACCGCATAAGGTTGTAGCTTCCATTGATGACGAAGGCAAGCCGATCCACGCCCTTGACGTATCCCCTGGTGGCCAGCTccttgctttagccgggacaGGGACGCACGTCAAGCTAGTCTCTTTAGCATGACCAAGGTGCCCTGCTCCTTGTACTGATAGGCCGTTTTCAGTTATTTGGTGTCCTGTGGTACTTTAGTGCCGAAGCGAGGCTTTGAAAGATTGGAGTTTGTATCAGCGGTCAGCGGTTTGTTTGAGCTTTCAActtaaaatgtttattttaatcttaCAACGATTGTACGCACCGGTATTAAAGGTTTGAAAATACAGATACttattaatatatttttcgATTACAGTCCCTTGTAGGTGAAAATTCTAAATCGCGGCAAAATCAAATAAGTTTATCTAAAttgtttagaatatttttatagtAATGCGAGCTTTCTCGCTTGTTTAAATTACAAAAGACTAAATTTAGAAATGTAAGTGATGTTGTATTTCGCTAAACTCTTTTGCACACGAATTATAATTCATCTTATTCGCATTTTTGTCTTTGTGACCAGATGAAAAACAATAGAATACCAACAATAAAAACCAAGCCATCGTGGTATGGAATCCCCGGTTACACTGAGTTTGCCTTTAAAATGTCTCCCTTTGTTGAGTGCAAACCTGATTTAATCATGTATAATTCTCTTCAATAGAATTTTCTCCTTCACCAAGTTTCTGGCAATATTTAGTTCAAATAACGGTTTTAATTAGTCAAACCACCGGCTTTAGCATTGTATCGGTGCAGCAGGAACCTTTGCGAATGATTCTTCCGCGATGCCCCAATAGCCATTCCagttacaatacaatacaatacaatacaatacaatacaatacaatatatttttatttgtaccaCAAGATGAAATTACAATACAAAACTAAATACTTTAATACAAATCGGGTACTGGCTGTCTAGAAATAACTAAAAAGCTAATCTAGCTAGACAGCCAAAATTAAATGACTTACGAGATTCTGTCGTCAGACGAGGCACAAGTacaaaaaacagcaaaaaatagacaagcaaacacgaaaagaaaaggaaaagaatGTATGAATAAACTTAGATATGAACGGAACATACAACCCGAAAATTATACATACATGAAAATATACATGGCAAAAACGTCTCAGATCTAGTAAGAGGTTATGAAATttctttttatagtttttttaatCGGTTAAAGGGTAGCTGCTTAGCTGAGTAGTCAATTTTATTCCATGTTATAACTCCTTAGAAGCGAATATTGAACTTGCCATAGTTTGTACGAACTGATGGAAGACAGAAGGATGAGCTCGAGGTTAGCCTGGTTTCATACGTGTGCCTTGAGCTGATGGGTGTGAAGAAATTATTAAATGGAGTAGGTAATAATTTTGAGTAAAATTTGAACATGAATTGACAGTTGAGATATGATAAAATATCTTGGAATTTAAGgatttgtaattttttaaatGGTGGAGAGGTATGCTCAGTAAACGAGGAAAAAGTGATAAGACGGATTGCTCTTTTTTGTAGTCTAAATAAAGGCATTGTTGTGGTTTG

Protein

Uniprot

Gene family

Uniprot term	Description
O48847	Transcriptional corepressor LEUNIG_HOMOLOG OS=Arabidopsis thaliana OX=3702 GN=LUH PE=1 SV=1

Gene family	Subfamily
Ubiquitin Family	UBD\|Other\|Beta-prp
Ubiquitin Family	E3\|E3 adaptor Cullin RING\|DWD

Pfam domain

Pfam accession	Pfam name	Description	Type	Source
PF00400	WD40	WD domain, G-beta repeat	Repeat	Interproscan

InterPro

InterPro term	Type	Description	Source
IPR001680	Repeat	WD40 repeat	Interproscan
IPR036322	Homologous_superfamily	WD40-repeat-containing domain superfamily	Interproscan
IPR015943	Homologous_superfamily	WD40/YVTN repeat-like-containing domain superfamily	Interproscan

PANTHER

PANTHER term	Description	Source
PTHR47822	CARBOHYDRATE BINDING DOMAIN CONTAINING PROTEIN	Interproscan

Gene Ontology

GO terms	Category	Description	Source
GO:0005515	Molecular Function	protein binding	Interproscan