Gene detail

Detailed information of XP_048584993.1 in Nematostella vectensis

Genomic Location: NC_064039.1:5197247...5207657
NR annotation: XP_048584993.1, inositol polyphosphate-5-phosphatase A [Nematostella vectensis]
Species Nematostella vectensis · all data for this species · gene families

Gene Structure

More details in JBrowse

Sequence

CDS

Transcript

rna-XM_048729036.1

TTTATTCCCATAATGCATGCTGGGCGCTTTCCCGCTACAAACACAACCGTTTCCGTCGGAGTAAGATAAGATTGGTCTGAAAAGACAACCTTCCCTTCCATTTAACCCAGAATGCCACCCCGATTGCCATAAACAAACCCGCCATGGACGAGACTAACGTACCTATGCTACTCATTACGGCCAACGTCGGGTCTCTCTTCGAAGACcgcgaaaataaagaaaaaatatgggTTGAGAAGATTTTAGAGACTTTTGAAAAATTCGATCCATCGTTCGTTGCTCTACATTTTCAAGAATGTGGTGGAAAAGTTGCCGCCGAGGCAGCTTTCGAGAGTGTTGAAGATTTTACACGTGCTTTACTCAAAAACGAAAAAATTTGCCTGAGATTCGATCGACGTTTCGCCTGGATCGACCAAGATTTTCAAAAAGCTGAAAAATTCACAGCCTTAggttgtatttattttatcaaGAAATCTCTAAAGAACATCTTGGTGTGGAATCATCAAGAATCACAATTTGTTTCTACAAAGGTTGAGGAGATTAAGGTTGGCGATCTGTCTGATGTGTCATGTGTCCAAAAGTTAAAGTTTCCTAGGGAATTTTTCCCTCAGTTGAAGTGGTCTAGAAAAGGCTTCATGAGAACAagatggaaaataaataactgCATATTTGACCTGTTGAATATCCATTTATTTCATGATGCTTCAAATCTAGAAGCTATGCAAATGTCTCCTTCAGACTACAGTCAGGCTAGACACAGAGCATTAAAACACATCCTTGAAAGGCTTGAGAATGACTCACTACCAAAAGCCCCTTGTATTCTTTTTGGAGATTTTAATTTTAGACTTGATACAAAGGCTGTTGTAGAGTCACTTTGCGCTGGTCTGCAGTCACAATACATACGAAAGGATGGGGAAAGCATTCCATCCAAAGTCTTGTTCAGAGACAAGAAAATTTCAGACAAGGTTGTCTTAGCTGTAGAGACTAAGAAATTTGTAGTTCATGATCAAAGTTACTTCCATTCTGAAGATGGGAAAAGATTCCAAAAGTATAACAGAGAATTTGAAGAGTTTCAAAACAAGTTATATGAATTCAACATTTCATTCCCACCAAGTTATCCTTTTAGTGATGATATCAAAGAGGGGATGCTGTACAATAATTCAAGGTGCCCATCCTGGtgcgatcgagtcttccttTCCCATTCTGCAAGGAAGATGGTAATACAGGATGTGGACCACTCTGTGACGTATGATATGATCGGGAGAAAAGTCTGCATGGGGGATCACAAGCCAGTATATTTACATTTCTATTTGGATTCCTTGAGAGAAGTGCTGTCAGTAACTCAGGAGCTGAAGTAATGTGTAGTTGTGCTGCTTTTTGATAGATAGTAGTTCAAAGTCATCAGTTGCCTGAAGATTCTGTTGTGAAGTCACTACAGCAAGCTGTAAAAAGCGAGAGGGCTGAGGTACTTAAGGAGAGAGCAGATGGCATTAGGGACGAAGCTCCGCGGAACATCCACCGCGCACTAGATCTTGCCGCAGAAAAGGGATCTTCAGTGTGGCTTACATATCCCCACTACTTGCGTGTGCGGGGACAAGTTCACAGTAGATCATGCGATGATCTGTAAGCAAGGAGGATTCATTTCCCAGCGCCATAACGAATTAAGGGATCTGGAAGCGGATCTTCTTGATATGGTCTGCAATGATGTAAAGATCGAGCCTGTCCTGCAAGATATCACAGGGGAACAACTCGGAAGAAGATCTAATACTGCCCCAGATGCAAGACTAGATATATACGCGCGGGGTTTCTGGGAACCACAAAGAGCAGCGTTCTTTGATGTCAGGGTCTGTCACCCTAATGCTGGCTCTTATAGGGAACTACACCAGATTTATCGCAATCGTGAGAACGAGAAGAAAAGATTATACTCGCGAAGAGTTCTCGAAGTTGAACAAGGAACCTTTACGCCTTTAGTATTTACAAGCACTGGTGGCATGGGTAAAGAATGTCTGCGTTTTCACAGTCGCCTCGCCGAGCTGCTATCTGTTAAGAAGGGAGAACGATATAGTGACACTATAAGCTGGATAACGGCCAGAGTCTCCTTCGCCCTTCTCCCTTTCTGCGCTTGTCTGCCTCAGAGGGTCAAGAGCAGATTCGATTTGAAGAACATTGACTTTAAAATTGCCAACTCTGAAAGCTCGGGTTGAATAAGATTAAtgtactttttagttttctcgATATTTTAACACTCCATACTTTAAGAATTagttttttacttttaaattatttttacacattgttatcattattattgaaTTCATCAGTGTTTAACCAAAACTTTTTAATGTCAAAAAATGTGATTGTAGAGAATTGTACATAGATAATTAGattttataattattgttaataaagatttattattatta

Protein

UniProt (Swiss-Prot top hit)

UniProt accession	Description
Q29467	Inositol polyphosphate-5-phosphatase A OS=Canis lupus familiaris OX=9615 GN=INPP5A PE=1 SV=1
Q14642	Inositol polyphosphate-5-phosphatase A OS=Homo sapiens OX=9606 GN=INPP5A PE=1 SV=1
Q7TNC9	Inositol polyphosphate-5-phosphatase A OS=Mus musculus OX=10090 GN=Inpp5a PE=1 SV=1

Gene family

Family type	Membership / link
Orthogroup (gene family)	OG0003769 (this species only)

Pfam domain

No Pfam domain signature was detected for XP_048584993.1. This gene does have a gene model — the search simply returned no hit.

InterPro

InterPro term	Type	Description	Source
IPR000300 all species →	Domain	Inositol polyphosphate-related phosphatase	Interproscan
IPR036691 all species →	Homologous_superfamily	Endonuclease/exonuclease/phosphatase superfamily	Interproscan
IPR039737 all species →	Family	Type I inositol 1,4,5-trisphosphate 5-phosphatase	Interproscan

PANTHER

PANTHER term	Description	Source
PTHR12997 all species →	TYPE I INOSITOL-1,4,5-TRISPHOSPHATE 5-PHOSPHATASE	Interproscan

Gene Ontology

GO term	Category	Description	Source
GO:0016791 all species →	Molecular Function	phosphatase activity	Interproscan
GO:0046856 all species →	Biological Process	phosphatidylinositol dephosphorylation	Interproscan
GO:0004445 all species →	Molecular Function	inositol-polyphosphate 5-phosphatase activity	Interproscan
GO:0046855 all species →	Biological Process	obsolete inositol phosphate dephosphorylation	Interproscan
GO:0048016 all species →	Biological Process	obsolete inositol phosphate-mediated signaling	Interproscan

Search by domain instead of by gene. Any accession above (InterPro, Pfam, PANTHER, GO, KEGG) can be used as a query on the Functional Domain Search page, which searches all 148 annotated genomes at once.

KEGG pathway

KO	Enzyme	Enzyme ID	Pathway	Map ID	Source
K01106	INPP5A; inositol polyphosphate 5-phosphatase INPP5A	EC:3.1.3.56	Insulin signaling pathway	ko04910	deepkoala

Searching by KO or pathway ID across all species is available on the KEGG Pathway page.

Expression pattern (RNA-seq)

Transcript abundance of XP_048584993.1 across 48 RNA-seq samples of Nematostella vectensis. Values are TPM (transcripts per million) from the StringTie quantification; one bar is one sample, grouped and coloured by condition, sorted by expression within each group.

48Samples

39TPM > 0

16Conditions

19.7Max TPM

9.4Mean TPM

By condition

Condition	Samples	TPM > 0	Mean TPM	Max TPM
whole 6 week old aboral regenerate · regenerate 96hpa	3	3	9.71	10.55
whole 6 week old aboral regenerate · regenerate 144hpa	3	3	9.15	11.87
whole 6 week old aboral regenerate · regenerate 0hpa	3	3	10.16	12.99
whole 6 week old aboral regenerate · regenerate 2hpa	3	3	12.73	16.35
whole 6 week old aboral regenerate · regenerate uncut	3	3	9.36	10.56
whole 6 week old aboral regenerate · regenerate 4hpa	3	2	6.02	13.39
whole 6 week old aboral regenerate · regenerate 120hpa	3	2	7.12	12.36
whole 6 week old aboral regenerate · regenerate 36hpa	3	3	10.39	13.31
whole 6 week old aboral regenerate · regenerate 24hpa	3	2	9.47	16.22
whole 6 week old aboral regenerate · regenerate 20hpa	3	2	10.81	16.32
whole 6 week old aboral regenerate · regenerate 16hpa	3	3	16.35	19.74
whole 6 week old aboral regenerate · regenerate 72hpa	3	2	7.16	12.02
whole 6 week old aboral regenerate · regenerate 60hpa	3	3	10.52	11.00
whole 6 week old aboral regenerate · regenerate 48hpa	3	2	8.18	13.23
whole 6 week old aboral regenerate · regenerate 8hpa	3	2	7.09	11.49
whole 6 week old aboral regenerate · regenerate 12hpa	3	1	5.93	17.78

Per sample · hover a bar for the full sample record · show / hide the sample table

SRA run	Condition	Tissue	Developmental stage	Treatment	Study	TPM
SRR6320836	whole 6 week old aboral regenerate · regenerate 96hpa	whole 6 week old aboral regenerate	six weeks	regenerate 96hpa	SRP125570	10.55
SRR6320863	whole 6 week old aboral regenerate · regenerate 96hpa	whole 6 week old aboral regenerate	six weeks	regenerate 96hpa	SRP125570	10.55
SRR6320837	whole 6 week old aboral regenerate · regenerate 96hpa	whole 6 week old aboral regenerate	six weeks	regenerate 96hpa	SRP125570	8.04
SRR6320847	whole 6 week old aboral regenerate · regenerate 144hpa	whole 6 week old aboral regenerate	six weeks	regenerate 144hpa	SRP125570	11.87
SRR6320841	whole 6 week old aboral regenerate · regenerate 144hpa	whole 6 week old aboral regenerate	six weeks	regenerate 144hpa	SRP125570	7.87
SRR6320838	whole 6 week old aboral regenerate · regenerate 144hpa	whole 6 week old aboral regenerate	six weeks	regenerate 144hpa	SRP125570	7.70
SRR6320846	whole 6 week old aboral regenerate · regenerate 0hpa	whole 6 week old aboral regenerate	six weeks	regenerate 0hpa	SRP125570	12.99
SRR6320840	whole 6 week old aboral regenerate · regenerate 0hpa	whole 6 week old aboral regenerate	six weeks	regenerate 0hpa	SRP125570	8.99
SRR6320839	whole 6 week old aboral regenerate · regenerate 0hpa	whole 6 week old aboral regenerate	six weeks	regenerate 0hpa	SRP125570	8.52
SRR6320861	whole 6 week old aboral regenerate · regenerate 2hpa	whole 6 week old aboral regenerate	six weeks	regenerate 2hpa	SRP125570	16.35
SRR6320842	whole 6 week old aboral regenerate · regenerate 2hpa	whole 6 week old aboral regenerate	six weeks	regenerate 2hpa	SRP125570	13.23
SRR6320848	whole 6 week old aboral regenerate · regenerate 2hpa	whole 6 week old aboral regenerate	six weeks	regenerate 2hpa	SRP125570	8.60
SRR6320843	whole 6 week old aboral regenerate · regenerate uncut	whole 6 week old aboral regenerate	six weeks	regenerate uncut	SRP125570	10.56
SRR6320844	whole 6 week old aboral regenerate · regenerate uncut	whole 6 week old aboral regenerate	six weeks	regenerate uncut	SRP125570	10.14
SRR6320845	whole 6 week old aboral regenerate · regenerate uncut	whole 6 week old aboral regenerate	six weeks	regenerate uncut	SRP125570	7.36
SRR6320872	whole 6 week old aboral regenerate · regenerate 4hpa	whole 6 week old aboral regenerate	six weeks	regenerate 4hpa	SRP125570	13.39
SRR6320849	whole 6 week old aboral regenerate · regenerate 4hpa	whole 6 week old aboral regenerate	six weeks	regenerate 4hpa	SRP125570	4.67
SRR6320873	whole 6 week old aboral regenerate · regenerate 4hpa	whole 6 week old aboral regenerate	six weeks	regenerate 4hpa	SRP125570	0.00
SRR6320882	whole 6 week old aboral regenerate · regenerate 120hpa	whole 6 week old aboral regenerate	six weeks	regenerate 120hpa	SRP125570	12.36
SRR6320883	whole 6 week old aboral regenerate · regenerate 120hpa	whole 6 week old aboral regenerate	six weeks	regenerate 120hpa	SRP125570	9.01
SRR6320850	whole 6 week old aboral regenerate · regenerate 120hpa	whole 6 week old aboral regenerate	six weeks	regenerate 120hpa	SRP125570	0.00
SRR6320855	whole 6 week old aboral regenerate · regenerate 36hpa	whole 6 week old aboral regenerate	six weeks	regenerate 36hpa	SRP125570	13.31
SRR6320851	whole 6 week old aboral regenerate · regenerate 36hpa	whole 6 week old aboral regenerate	six weeks	regenerate 36hpa	SRP125570	10.00
SRR6320852	whole 6 week old aboral regenerate · regenerate 36hpa	whole 6 week old aboral regenerate	six weeks	regenerate 36hpa	SRP125570	7.84
SRR6320854	whole 6 week old aboral regenerate · regenerate 24hpa	whole 6 week old aboral regenerate	six weeks	regenerate 24hpa	SRP125570	16.22
SRR6320853	whole 6 week old aboral regenerate · regenerate 24hpa	whole 6 week old aboral regenerate	six weeks	regenerate 24hpa	SRP125570	12.18
SRR6320856	whole 6 week old aboral regenerate · regenerate 24hpa	whole 6 week old aboral regenerate	six weeks	regenerate 24hpa	SRP125570	0.00
SRR6320860	whole 6 week old aboral regenerate · regenerate 20hpa	whole 6 week old aboral regenerate	six weeks	regenerate 20hpa	SRP125570	16.32
SRR6320857	whole 6 week old aboral regenerate · regenerate 20hpa	whole 6 week old aboral regenerate	six weeks	regenerate 20hpa	SRP125570	16.12
SRR6320859	whole 6 week old aboral regenerate · regenerate 20hpa	whole 6 week old aboral regenerate	six weeks	regenerate 20hpa	SRP125570	0.00
SRR6320880	whole 6 week old aboral regenerate · regenerate 16hpa	whole 6 week old aboral regenerate	six weeks	regenerate 16hpa	SRP125570	19.74
SRR6320858	whole 6 week old aboral regenerate · regenerate 16hpa	whole 6 week old aboral regenerate	six weeks	regenerate 16hpa	SRP125570	14.97
SRR6320881	whole 6 week old aboral regenerate · regenerate 16hpa	whole 6 week old aboral regenerate	six weeks	regenerate 16hpa	SRP125570	14.33
SRR6320862	whole 6 week old aboral regenerate · regenerate 72hpa	whole 6 week old aboral regenerate	six weeks	regenerate 72hpa	SRP125570	12.02
SRR6320865	whole 6 week old aboral regenerate · regenerate 72hpa	whole 6 week old aboral regenerate	six weeks	regenerate 72hpa	SRP125570	9.47
SRR6320864	whole 6 week old aboral regenerate · regenerate 72hpa	whole 6 week old aboral regenerate	six weeks	regenerate 72hpa	SRP125570	0.00
SRR6320869	whole 6 week old aboral regenerate · regenerate 60hpa	whole 6 week old aboral regenerate	six weeks	regenerate 60hpa	SRP125570	11.00
SRR6320866	whole 6 week old aboral regenerate · regenerate 60hpa	whole 6 week old aboral regenerate	six weeks	regenerate 60hpa	SRP125570	10.40
SRR6320867	whole 6 week old aboral regenerate · regenerate 60hpa	whole 6 week old aboral regenerate	six weeks	regenerate 60hpa	SRP125570	10.15
SRR6320870	whole 6 week old aboral regenerate · regenerate 48hpa	whole 6 week old aboral regenerate	six weeks	regenerate 48hpa	SRP125570	13.23
SRR6320871	whole 6 week old aboral regenerate · regenerate 48hpa	whole 6 week old aboral regenerate	six weeks	regenerate 48hpa	SRP125570	11.32
SRR6320868	whole 6 week old aboral regenerate · regenerate 48hpa	whole 6 week old aboral regenerate	six weeks	regenerate 48hpa	SRP125570	0.00
SRR6320874	whole 6 week old aboral regenerate · regenerate 8hpa	whole 6 week old aboral regenerate	six weeks	regenerate 8hpa	SRP125570	11.49
SRR6320875	whole 6 week old aboral regenerate · regenerate 8hpa	whole 6 week old aboral regenerate	six weeks	regenerate 8hpa	SRP125570	9.77
SRR6320876	whole 6 week old aboral regenerate · regenerate 8hpa	whole 6 week old aboral regenerate	six weeks	regenerate 8hpa	SRP125570	0.00
SRR6320877	whole 6 week old aboral regenerate · regenerate 12hpa	whole 6 week old aboral regenerate	six weeks	regenerate 12hpa	SRP125570	17.78
SRR6320878	whole 6 week old aboral regenerate · regenerate 12hpa	whole 6 week old aboral regenerate	six weeks	regenerate 12hpa	SRP125570	0.00
SRR6320879	whole 6 week old aboral regenerate · regenerate 12hpa	whole 6 week old aboral regenerate	six weeks	regenerate 12hpa	SRP125570	0.00

Source: CnidoSite RNA-seq expression matrices (NVECT_TPM, StringTie quantification over 48 runs), joined to SRA sample metadata. Samples whose tissue/treatment is not recorded in the source metadata are grouped by the descriptor carried in the expression matrix itself.