Gene detail

Detailed information of XP_048585294.1 in Nematostella vectensis

Genomic Location: NC_064039.1:3031597...3037004
NR annotation: XP_048585294.1, urease accessory protein D isoform X2 [Nematostella vectensis]
Species Nematostella vectensis · all data for this species · gene families

Gene Structure

More details in JBrowse

Sequence

CDS

Transcript

rna-XM_048729337.1

aaagccaggagtcaatgggttaattaGGTATGAAAATCTTCTCTTTCAGACTTCCTGTGGTAAACTTGACCACAGGGAACCTGGCCCTGCAAGAACACTAGACACAAAAACGTGCCGGATGTCTATGTCAGTGCTACCGAGCAAGAGCAGTGTAGTGGAGCAAGAGATGTTTTTGTTGCGAAATCCACATTTCGTTTTGGGTGTTATCctcAAACTACTAGTCCCAAAGTATGCATCTGAAAACCCTCGCTGCAAATGGCTCTACCTAATTGCTTATGGTGGTGGTCTGGTGGAGGGGGATAGTATTACACTTCATGTAGAAGTTGAGAAAAATGCATCTGTTGTGCTAACATCACAAGCCTCAACAAAGGTCTATCACTCTGAAAGAGGACGGACTACCAGCCAGAAAATATCTGCAATGGTTGCTGATGGAGCTTTGCTTGCTGTGCTACCAAGTTACCTAGTCTGTTTCAAAGATGCTCTTTACAAACAAGATCAGgTTTTTCACCTGGCACCCCAAGGTAACATCATTCTATTGGACTGGATGACTGCTGGTCGGATGGCTTGTGACGAAGCCTGGCAAATGACCAGTTGTTCCTTGCAAAATGAAGTCTACATTGATGGCAAATTAGTGTTTGGGGATTCTATGACTCTGGCCCAACATAGTGATAACCTATTGCAATACAAGATGGGGAAAGTTAAGGTGGTTGGTACATGTGTTATCATTGGCCCATATTTTAAGGATAAAATCTGTTCGATCCAGGAAAAGGTTAAGTCATTTCACTATAAATACAAGTATAACAATGTGATTACTATTTCTGCAAGCCCGCTTGCACCATTATGTGATGGCATAGTCATCAAACTCATGTCAACTGAAGAGGCAGAGATGGTACAACAATGTTTTTCTGATATCATTGCTGATGTGGTGCCGAATATTGGTGGGGATCCCCTTATAAAACAGTAGACATAAGTATAGATGCAGTCAGAGGTCTGACCAGGAATGTTTTTAAAGGTATGCCAAGAAAGGTGTAAAAATGCTTTTTATTAAGCAATACAGTATTTCACTTAAAATGATCATCACAATTCTATTTGTGTGGTAAATATAAGCATGCAGTATTTGTGTACAGGTAGCTTCATCTATGCATGCTCTTATTTTTGCCTTCAATTATCTGTGAGCCACAAAAGAAATGCATGCAGGAAAGGTCTGATGTGTCGATGAACAGGGGTTATCCTGAAATTTCAGAAAGGGTGCATGATAGTGTAATAGGCAGGGCCTGGACAAACCCAAATTGCAAATCACCTTAGACAATACAGCAAATGTATGGGGAAATCTCAGGGGGGTGGGCACCTCCACCCCTTCtccttatttatttctatttcattTTATCATTTCATTTCATCTCTGCTATTATTTCTTGTCGCTCATGGCATTTGGCTCTGAGCTACTGTACTCAGACTCTGAGCCCTCCACTTGGCCATTCAAACATGTGCTTTGACTATTTTTGTGTCTTCTTATTTCGATTTGCTGCTCTGAACTATTTTGATAAGTTAAAACCATTACCATCTGGACATGGGCTCGAAAATTTGGGCATGCTCCAAGTTTGATCTCGTGCTCTGATATCTTGATAACGTGTTGTTACACTTCGATCATGTATGTCAAATTTCCGCATCACGCGCTTTGACGTTCTGATCACGTGCTCAGACATATTGTTCACCCTTATTTGCCGTTGGATCATACCCTCGTAGACTTTGATCTTGCGTCCTTGAGCTGTTGTTCCTTGTTGAAGAGAAACCCCTGTCATAGAGCCTGAGCTCTCTACCTCTGAAACGTGACGTGACCGCGTGGATTACGAGTTTTCTGAACGCCATGCGAAAGTCCTTTATCATAAAGCTGTAGATGAAAGGGTTCAGGACAGAGTTGAGGTAATGCAGCCATTTGGTCAACATGATGCTCTCGATGTCAATAGGACACtctctgaagaaaaaaatatagtgAGAAATCACTGCCAAGATTCCGTCTAAATGTCTATCCCCATCTTTCCGAGGCTTGCCTACTGTCATGCCTAATACACGCAGAATGAGGGCATCATACAAACAATGCCCAAGTTTAGTGGGATATGCTACGCCTGTATAATCCGTTCAGAATTTGAATCCCCAAGACTTGCATTCTAACCAAGAGAGTGTGATGtaagaaaacaaattcccTTGTGTTTAAAAATAGCTGTCTGTTCTAAAAATAACTCCCAGAGACGAtatgggccacggggattcgttctcttacatcatacTCTATTGGTCTAACCAACTGCATGGTGTTTCCCAATACCCTATAAGGAAGCCAGTCGCTATCGACATGTCATGCCAAACCTGTATCAAGCTAGTATGTACATCAAGATGATGTCAAACGGCTAATCCAATCAAATGCTTTTCCATTGTACAATTGAGCCAATAAAAAATGCCATTGAACTGTCA

Protein

UniProt (Swiss-Prot top hit)

UniProt accession	Description
J9VQV8	Urease accessory protein 4 OS=Cryptococcus neoformans var. grubii serotype A (strain H99 / ATCC 208821 / CBS 10515 / FGSC 9487) OX=235443 GN=URE4 PE=1 SV=1
Q11VN0	Urease accessory protein UreD OS=Cytophaga hutchinsonii (strain ATCC 33406 / DSM 1761 / CIP 103989 / NBRC 15051 / NCIMB 9469 / D465) OX=269798 GN=ureD PE=3 SV=1
B2GI02	Urease accessory protein UreD OS=Kocuria rhizophila (strain ATCC 9341 / DSM 348 / NBRC 103217 / DC2201) OX=378753 GN=ureD PE=3 SV=2

Gene family

Family type	Membership / link
Orthogroup (gene family)	OG0010585 (this species only)

Pfam domain

Pfam accession	Pfam name	Description	Type	Source
PF01774 all species →	UreD	UreD urease accessory protein	Family	Interproscan

InterPro

InterPro term	Type	Description	Source
IPR002669 all species →	Family	Urease accessory protein UreD	Interproscan

PANTHER

PANTHER term	Description	Source
PTHR33643 all species →	UREASE ACCESSORY PROTEIN D	Interproscan

Gene Ontology

GO term	Category	Description	Source
GO:0006807 all species →	Biological Process	obsolete nitrogen compound metabolic process	Interproscan
GO:0016151 all species →	Molecular Function	nickel cation binding	Interproscan

Search by domain instead of by gene. Any accession above (InterPro, Pfam, PANTHER, GO, KEGG) can be used as a query on the Functional Domain Search page, which searches all 148 annotated genomes at once.

KEGG pathway

KO	Enzyme	Enzyme ID	Pathway	Map ID	Source
K03190	ureD, ureH; urease accessory protein	-	Protein processing	-	deepkoala

Searching by KO or pathway ID across all species is available on the KEGG Pathway page.

Expression pattern (RNA-seq)

Transcript abundance of XP_048585294.1 across 48 RNA-seq samples of Nematostella vectensis. Values are TPM (transcripts per million) from the StringTie quantification; one bar is one sample, grouped and coloured by condition, sorted by expression within each group.

48Samples

34TPM > 0

16Conditions

3.9Max TPM

1.8Mean TPM

By condition

Condition	Samples	TPM > 0	Mean TPM	Max TPM
whole 6 week old aboral regenerate · regenerate 96hpa	3	1	0.82	2.47
whole 6 week old aboral regenerate · regenerate 144hpa	3	3	3.04	3.94
whole 6 week old aboral regenerate · regenerate 0hpa	3	3	3.04	3.53
whole 6 week old aboral regenerate · regenerate 2hpa	3	3	3.46	3.70
whole 6 week old aboral regenerate · regenerate uncut	3	3	2.78	3.04
whole 6 week old aboral regenerate · regenerate 4hpa	3	1	0.88	2.63
whole 6 week old aboral regenerate · regenerate 120hpa	3	2	1.84	2.81
whole 6 week old aboral regenerate · regenerate 36hpa	3	2	1.62	2.46
whole 6 week old aboral regenerate · regenerate 24hpa	3	2	0.98	1.58
whole 6 week old aboral regenerate · regenerate 20hpa	3	2	1.03	1.83
whole 6 week old aboral regenerate · regenerate 16hpa	3	3	1.72	1.83
whole 6 week old aboral regenerate · regenerate 72hpa	3	2	1.83	2.78
whole 6 week old aboral regenerate · regenerate 60hpa	3	3	2.67	3.06
whole 6 week old aboral regenerate · regenerate 48hpa	3	1	0.82	2.45
whole 6 week old aboral regenerate · regenerate 8hpa	3	2	2.10	3.25
whole 6 week old aboral regenerate · regenerate 12hpa	3	1	0.44	1.33

Per sample · hover a bar for the full sample record · show / hide the sample table

SRA run	Condition	Tissue	Developmental stage	Treatment	Study	TPM
SRR6320836	whole 6 week old aboral regenerate · regenerate 96hpa	whole 6 week old aboral regenerate	six weeks	regenerate 96hpa	SRP125570	2.47
SRR6320837	whole 6 week old aboral regenerate · regenerate 96hpa	whole 6 week old aboral regenerate	six weeks	regenerate 96hpa	SRP125570	0.00
SRR6320863	whole 6 week old aboral regenerate · regenerate 96hpa	whole 6 week old aboral regenerate	six weeks	regenerate 96hpa	SRP125570	0.00
SRR6320847	whole 6 week old aboral regenerate · regenerate 144hpa	whole 6 week old aboral regenerate	six weeks	regenerate 144hpa	SRP125570	3.94
SRR6320838	whole 6 week old aboral regenerate · regenerate 144hpa	whole 6 week old aboral regenerate	six weeks	regenerate 144hpa	SRP125570	2.82
SRR6320841	whole 6 week old aboral regenerate · regenerate 144hpa	whole 6 week old aboral regenerate	six weeks	regenerate 144hpa	SRP125570	2.35
SRR6320839	whole 6 week old aboral regenerate · regenerate 0hpa	whole 6 week old aboral regenerate	six weeks	regenerate 0hpa	SRP125570	3.53
SRR6320840	whole 6 week old aboral regenerate · regenerate 0hpa	whole 6 week old aboral regenerate	six weeks	regenerate 0hpa	SRP125570	3.34
SRR6320846	whole 6 week old aboral regenerate · regenerate 0hpa	whole 6 week old aboral regenerate	six weeks	regenerate 0hpa	SRP125570	2.26
SRR6320848	whole 6 week old aboral regenerate · regenerate 2hpa	whole 6 week old aboral regenerate	six weeks	regenerate 2hpa	SRP125570	3.70
SRR6320842	whole 6 week old aboral regenerate · regenerate 2hpa	whole 6 week old aboral regenerate	six weeks	regenerate 2hpa	SRP125570	3.37
SRR6320861	whole 6 week old aboral regenerate · regenerate 2hpa	whole 6 week old aboral regenerate	six weeks	regenerate 2hpa	SRP125570	3.32
SRR6320844	whole 6 week old aboral regenerate · regenerate uncut	whole 6 week old aboral regenerate	six weeks	regenerate uncut	SRP125570	3.04
SRR6320843	whole 6 week old aboral regenerate · regenerate uncut	whole 6 week old aboral regenerate	six weeks	regenerate uncut	SRP125570	2.72
SRR6320845	whole 6 week old aboral regenerate · regenerate uncut	whole 6 week old aboral regenerate	six weeks	regenerate uncut	SRP125570	2.57
SRR6320872	whole 6 week old aboral regenerate · regenerate 4hpa	whole 6 week old aboral regenerate	six weeks	regenerate 4hpa	SRP125570	2.63
SRR6320849	whole 6 week old aboral regenerate · regenerate 4hpa	whole 6 week old aboral regenerate	six weeks	regenerate 4hpa	SRP125570	0.00
SRR6320873	whole 6 week old aboral regenerate · regenerate 4hpa	whole 6 week old aboral regenerate	six weeks	regenerate 4hpa	SRP125570	0.00
SRR6320882	whole 6 week old aboral regenerate · regenerate 120hpa	whole 6 week old aboral regenerate	six weeks	regenerate 120hpa	SRP125570	2.81
SRR6320883	whole 6 week old aboral regenerate · regenerate 120hpa	whole 6 week old aboral regenerate	six weeks	regenerate 120hpa	SRP125570	2.71
SRR6320850	whole 6 week old aboral regenerate · regenerate 120hpa	whole 6 week old aboral regenerate	six weeks	regenerate 120hpa	SRP125570	0.00
SRR6320852	whole 6 week old aboral regenerate · regenerate 36hpa	whole 6 week old aboral regenerate	six weeks	regenerate 36hpa	SRP125570	2.46
SRR6320851	whole 6 week old aboral regenerate · regenerate 36hpa	whole 6 week old aboral regenerate	six weeks	regenerate 36hpa	SRP125570	2.41
SRR6320855	whole 6 week old aboral regenerate · regenerate 36hpa	whole 6 week old aboral regenerate	six weeks	regenerate 36hpa	SRP125570	0.00
SRR6320854	whole 6 week old aboral regenerate · regenerate 24hpa	whole 6 week old aboral regenerate	six weeks	regenerate 24hpa	SRP125570	1.58
SRR6320853	whole 6 week old aboral regenerate · regenerate 24hpa	whole 6 week old aboral regenerate	six weeks	regenerate 24hpa	SRP125570	1.35
SRR6320856	whole 6 week old aboral regenerate · regenerate 24hpa	whole 6 week old aboral regenerate	six weeks	regenerate 24hpa	SRP125570	0.00
SRR6320860	whole 6 week old aboral regenerate · regenerate 20hpa	whole 6 week old aboral regenerate	six weeks	regenerate 20hpa	SRP125570	1.83
SRR6320857	whole 6 week old aboral regenerate · regenerate 20hpa	whole 6 week old aboral regenerate	six weeks	regenerate 20hpa	SRP125570	1.26
SRR6320859	whole 6 week old aboral regenerate · regenerate 20hpa	whole 6 week old aboral regenerate	six weeks	regenerate 20hpa	SRP125570	0.00
SRR6320880	whole 6 week old aboral regenerate · regenerate 16hpa	whole 6 week old aboral regenerate	six weeks	regenerate 16hpa	SRP125570	1.83
SRR6320881	whole 6 week old aboral regenerate · regenerate 16hpa	whole 6 week old aboral regenerate	six weeks	regenerate 16hpa	SRP125570	1.82
SRR6320858	whole 6 week old aboral regenerate · regenerate 16hpa	whole 6 week old aboral regenerate	six weeks	regenerate 16hpa	SRP125570	1.53
SRR6320862	whole 6 week old aboral regenerate · regenerate 72hpa	whole 6 week old aboral regenerate	six weeks	regenerate 72hpa	SRP125570	2.78
SRR6320865	whole 6 week old aboral regenerate · regenerate 72hpa	whole 6 week old aboral regenerate	six weeks	regenerate 72hpa	SRP125570	2.72
SRR6320864	whole 6 week old aboral regenerate · regenerate 72hpa	whole 6 week old aboral regenerate	six weeks	regenerate 72hpa	SRP125570	0.00
SRR6320869	whole 6 week old aboral regenerate · regenerate 60hpa	whole 6 week old aboral regenerate	six weeks	regenerate 60hpa	SRP125570	3.06
SRR6320866	whole 6 week old aboral regenerate · regenerate 60hpa	whole 6 week old aboral regenerate	six weeks	regenerate 60hpa	SRP125570	2.50
SRR6320867	whole 6 week old aboral regenerate · regenerate 60hpa	whole 6 week old aboral regenerate	six weeks	regenerate 60hpa	SRP125570	2.45
SRR6320870	whole 6 week old aboral regenerate · regenerate 48hpa	whole 6 week old aboral regenerate	six weeks	regenerate 48hpa	SRP125570	2.45
SRR6320868	whole 6 week old aboral regenerate · regenerate 48hpa	whole 6 week old aboral regenerate	six weeks	regenerate 48hpa	SRP125570	0.00
SRR6320871	whole 6 week old aboral regenerate · regenerate 48hpa	whole 6 week old aboral regenerate	six weeks	regenerate 48hpa	SRP125570	0.00
SRR6320875	whole 6 week old aboral regenerate · regenerate 8hpa	whole 6 week old aboral regenerate	six weeks	regenerate 8hpa	SRP125570	3.25
SRR6320874	whole 6 week old aboral regenerate · regenerate 8hpa	whole 6 week old aboral regenerate	six weeks	regenerate 8hpa	SRP125570	3.06
SRR6320876	whole 6 week old aboral regenerate · regenerate 8hpa	whole 6 week old aboral regenerate	six weeks	regenerate 8hpa	SRP125570	0.00
SRR6320877	whole 6 week old aboral regenerate · regenerate 12hpa	whole 6 week old aboral regenerate	six weeks	regenerate 12hpa	SRP125570	1.33
SRR6320878	whole 6 week old aboral regenerate · regenerate 12hpa	whole 6 week old aboral regenerate	six weeks	regenerate 12hpa	SRP125570	0.00
SRR6320879	whole 6 week old aboral regenerate · regenerate 12hpa	whole 6 week old aboral regenerate	six weeks	regenerate 12hpa	SRP125570	0.00

Source: CnidoSite RNA-seq expression matrices (NVECT_TPM, StringTie quantification over 48 runs), joined to SRA sample metadata. Samples whose tissue/treatment is not recorded in the source metadata are grouped by the descriptor carried in the expression matrix itself.