Gene detail

Detailed information of XP_048585477.1 in Nematostella vectensis

Genomic Location: NC_064039.1:137288...144819
NR annotation: XP_048585476.1, uncharacterized protein LOC5511470 isoform X3 [Nematostella vectensis]

Gene Structure

More details in Jbrowse

Sequence

CDS

Transcript

rna-XM_048729520.1

GTCTTTTCACTCGTAAGGCGAGAAAGGCTGCAGTAATACAGAGGGTATGTACCGTGATAGCGGTCTCTTCACTCGTAGGGCGAGAAAGGCTGCAGTAATACAGAGGGTATGTACCGTGGTAGCGGTCTTTTCACTCGTAAGGCGAGAAAGGCTGCAGTAATACAGAGGATGAgtacaacaaagaaaatacacaTGCCTGCAGTTGCGATTGCAGCTGTCATTggcaaaaaaaagaagaatttGGATTATATCGAGGAAATGACAAATATCCGACCATCCATTGACAGTGATCAGGACTGTGTTATTCTTGAAGGCAGTGCAGAAGATGTCCAGAAAGCAGAACATATAATAAAGGATATGATAGAACCAGAAACTGTTGAGCTTAAAGAAAGTCAGATTGGTATGGTCATTGGAAAAGGTGGTAAACGAATAAATTCAATAGGCCAAGAAACCGGAGCAAAGATCTATGTCAAAGACTATAAGGCGCACATAATGGGCACCAAGAACCAAAAGAGCAAAGCAAAGTATCGTATTCTCAGACTTCTTGCTGAACCTGTGGTCTCTAAACGGACTGGTGTTTACATTTCAAAAGACCTTGTTGGGCGTGTTTTTGGGAAAAgtgaagaaataaagaaaagaattagtgaacaaacaaacacatttATATCTTACAATCTTGAGGAAGAAATGCTTTATATATGTGGCGAGACAGTTTTACAAGAACACAATGCTCGATGTCGAATTAAACAAGCAGTGCTTCCGTATAATAATGTTAAATGTAGCGCTATTGAAGGGAGTGAAAATAGCATGTTTAAGCTGGTGTTTGTGGAACCACCATATCCCACGTGGAGTGGAGAGTTCTTCGAAGTATCACTGGTTGATGGTCAGCAATGCGGACCATCAAACGTGGTTGGTTACAAGGACCTTGTACTTAAGAAACTCCAGCACTTAGACCCTGAAAAGGATGCTTTCGAAATCGACCTGTGGTCACATATTGGTCATGCGTACATAAAAGGCATCGATGAAGGGGATGATTTACAATACTACACCTTGAATGAACTGCAGTCACATTTACATCAAGATTATACATGGTTACCACTCCAAGGTGGAAGAAGTTCAACAACTAACAGTACCTGGAGGGTGGATTTTGCAGGAGGACTCACCGAGAGACAGGTCGCGCAGCTCATGCGGACATTTCAGGACCCAACATGTCGTGGACCTTCCAACATCCGATATGACTTCTCCTTTTTCTCACCATTAAGTCACAAGTATGGCTGTAGACGGATCAGAATAACGGCATTCATCAAAGAAGGAGAAGATGAAGAGTTTCCAATACAGATGAAGGGGGTACTCAGACACGAAATACTCAACGACAATTTACACATCTACCTTTGCGTACCATCAACTTCGGTACTTAAACTGACCATAATTATGCCATCACGACAGTTTGATTGCCGGCTGAACCTCAGAAAAAGTCCAAAAAACCTCCACCTAACACTAAAAGAGCAGGAGGAGGAGACCATGTTGATGGACTACCTGAGGAAGGCACTGGTTATCTGCGAGACAGGACAACTACAGTCTGTACAGTTAAAACAAGATGTCCCTCTTCCAGACGACTTCGATCTAGATTATTTTAGTCGATCTGAACGCTTTAACTGCCATTACCCTATCGGTGAAGAACGGTTTACGATGATGTTCTCTAGAGAAAAGGCAGTGCATTTGCCCAATTCAAAAAAGGACGAATGCCGTGAAATGATTGACCTACACCTACACTGTGATGATTGGGATAGGAGGCTTGCGAAGGGAGACTGGGACCCAGATCAAATAATCAAGAAGCTCGATAGTTATGTGGAATTTGTCAGATACGTGCAAAGCAACATCACCATGGAAACAGAAGAGGAACAAGCTTATCCAACATCACTCTAAACGCAGAAGAAGGGTTAGCccaaccaacatcaccatggGCTCAGAAGAAGAGTTAGCCTGACCAACATCACCATGGGCTCAGAAAAAGAGTTAGCCTGACCAACATCAACTTTGACACAGAAAAAGAATTAGCCTGACCAACATCACCATGGACCCAGAAGAAGAGTTAGCCTGACCAACATGGACCCAGAAGAAGAGTTAGCCTGACCAACATCACCATGGACCCAGAAGAAGGGTTAGCCTGACCAACATCACCTTTGACACAGAAAAAGAATTAGCCTGACCAACATCACCATGGACCCAGAAGAAGAGTTAGCCTGACCAACATGGACCCAGAAGAAGAGTTAGCCTGACCAACATCACCATGGACCCAGAAGAAGAGTTAGCTTGACCAACATCACCATGGACCCAGAAGAAAAGCTAGCCTGACCAACATCACCAATATACCGTTTTAATGTTCGCATAAAACTTACATTCTGAATAGATGTATAACAATTCAGATAGAAGCACCTTAATTCAGATAAATATAATGATTTCTGATATAACATATTAGATTTCCATCTTGCCTGAGGGCAaacgattttattttatttcacaatATGACCAAATCCCGGAGATGGTCTGCATGGTGACACTTCGTCAGATAATGTGAAACCTGGTGTGTAGGGGAATGTCAAGGGAGAGACTTTTATTGATGATGAGCCCTTTCTAATAGAAAGTTTGCCTTGTAATACTTGGAGTATTAAATATAGATCGACGAAA

Protein

Pfam domain

Pfam accession	Pfam name	Description	Type	Source
PF00013	KH_1	KH domain	Domain	Interproscan

InterPro

InterPro term	Type	Description	Source
IPR036612	Homologous_superfamily	K Homology domain, type 1 superfamily	Interproscan
IPR004088	Domain	K Homology domain, type 1	Interproscan
IPR004087	Domain	K Homology domain	Interproscan

PANTHER

PANTHER term	Description	Source
PTHR10288	KH DOMAIN CONTAINING RNA BINDING PROTEIN	Interproscan

Gene Ontology

GO terms	Category	Description	Source
GO:0003723	Molecular Function	RNA binding	Interproscan
GO:0003729	Molecular Function	mRNA binding	Interproscan
GO:0005634	Cellular Component	nucleus	Interproscan
GO:0005737	Cellular Component	cytoplasm	Interproscan
GO:0010468	Biological Process	regulation of gene expression	Interproscan
GO:0003676	Molecular Function	nucleic acid binding	Interproscan