Gene detail

Detailed information of XP_048586233.1 in Nematostella vectensis

Genomic Location: NC_064040.1:14083598...14108234
NR annotation: XP_048586233.1, WD repeat-containing protein 64-like isoform X1 [Nematostella vectensis]
Species abbreviation NVECT · all data for this species · gene families

Gene Structure

More details in JBrowse

Sequence

CDS

LOC5507881

ATGCTCTCGAGGCAAAACAGCTCGCGCCCATATACTAGTGGAAGCTTTCGAACGAAGCTCGAACTCTTTGACAAATTTATCAAAGAGTTTACGTACGTTGACGAGGAATTGAATCCCGAAGAACGAAGGCAAATACTCCAGGATCGTCTAACTAACGGATATGAACCATTTTGCGAAGCTATACGGAATTTATTCGGAAACGACGTTAGTACACAAGATTTGAAGGCTTTATTTAGGAAAATCGCACTAAATCCTGACGCTAAAGTTGATTGGAGCGAGCTTTTTGGGATTGGTGGTCCTACTGATGAGGTACCAGACCTGCTGCTTAATGAGGACACTTCTTCTGTCCTCACCACCAGCAAGCGCAAGACTGTGGCAGAGGCAGGAGGAGATAAGAAAAGACGTGATATTGTGCAGTCAATTTTGCATGTCCCAAAGTATGACTTCTACATCACAGCATCCCAGAAAGGAATTATTTGCCAATGGTCTAATAAGTTTCGACTGCAAGCCTGTACCGATATTATGGAGTCTTCATGGGTGACTGGGTGTGGATTTCTTCCAAGTCTTCGTAGGATAGTAGCAACATCTGAAAGAGCGATTGCCTTATGGGACTATAGGGCCAAGCGAAAACAATCAACAATTTATCAAATTAAACCCATGGAGAACTCTCCTCAGTGTATGACATACATTCCATGGAAGGCAAACTCCATGAATGAAGACACCATTCTATTTGGAGATGATCAAGGTTATGTGAATATACTGACCATTTCCTCAAAGGACTTACACATGAAAAACTCATCTGCAAAAGGGGATTCTGCTGTTGTCACTATTGAGCCAAATAAGCTTAGTAGTGAAATAAAGAGAAGAAAGTTCTTTGATGACTGGGTGCTAAAGATCAAGTACTTCCCTCAATTAGAGATGTTCGGATGTTGCTCCCCTGGTAGTTCCTGTTCATTTATACTTGGTGGTGTGGATAGGGTACTCAACAATGGGCCCGTACGAGAACTTGGTGTACCCAAAGGTGTCAACTGCTTTGATTACTGTACTAGAGCAAACGTCATTGTTACTGCAGGCGCAGATAAGATCGTTCGTATCTGGCACCCCCTGATATTCACTAGACCTACAGGCAAGCTACTAGGCCACCTCTTCACCATCGTGGAGATTGCCGTGAATGAAAAGGATCAGCAATTAATCAGCTTGTCAACGGCCAGGGTTTTTCGCGTCTGGGATCTACAGACTCTGACTTGTCTGCAGGTGTTTACAGATAATGAGGAAAGACCCGGAGAAAAGCGTATATCGGCTATGTTGTTTGACGCCAAACACGATAGGCTTATTACAGGGTGCAGTGTGATTGACACATGGCCATTAACCAGGGCAATACAAGATTCACTTCAAGTTCCGCATACCCATGATAGACCTATATCTCAGTTGCTGTACAACCCCCAAATGAACCAGGTGATCAGCGTGTGCACAGAGGGGGTGATGAAGGTGTGGGAGATGGAGACAGGCCAGATGGTCTACCAAGTTACTGATGCGCACGGCACATCCAATGAGGTCACTGCCATGAATGTGGATAACACAGGATATAGACTGATAACAGGAGCTTATGATGGTTCCATCAAAGCCTGGGATTTTGGGAGTGGGCAGCTTTACAAGAAGTACCCAGACGAGCCTGCGAAGAAAAGACAGGAGAACACCATCACGGGTCTAGTGTATCATACGGTGGACAACAAGCGATGCGTGCTGGTCTCTTCTTGGGGCCAAGGGATCACACTTTTAGAGGACTGTTATGACCTTCCGATGTTCAGTGAACTGCGGGTTTTCAGCGACTTGTATATACCCCAATCTCCAGCTAGCGAACCAGAAGGTGCAACACCTTTTATCTCTCGAGTAACTTTACCAGACATTAACCAGAAATCCAGTACGCCTGTGGCGACTCACGCGCTGTCCACGTGCGAGGTCACGTGCATGGAGGAGTTTGGTGATTCTGCGCTGTTTGCTGGGACGAGCGATGGCAACATTATCATGTGGAACTTGCAGACAGAGAAGATTATAACCAGGTTTGATTTGCCCCCGCTCAGCAGAAGCTCTCGTAGCGGGCGCTCCAAAAGACAGCGTCAGGATGAACGCCTTGTCCACGCTTGCCGAGTGATGGTACATAGAGTCAGAAGACCGATCATCTACGGCGAAACCAAGCATGCCATCCACACACTTCTAGAGGAATCAGAAGCAGATGAGACAGAGGAGAATGACGCTGCCATAGAGGTGTCCGCATCAGATGAGTTGAAAGAGAACGGCGATAAGGCTGACAAAAATAACGGCGATGATGAGAACAGGGACGAAAGCGACTCTAGTGACACTAACAAAGACGTGGAGATGAAGGAGGAAGGGTTTGAGAAAGGGGTGGAAGGGGAGAAGGAGGGGGATGAAGATGGGAGTGGCATGGAGGAAGGGGGACAGCCTGAGGATGAGGACTCCCCCTTTATTAGGATCAGTGACCCTGCTCTGGTGTCTGCCCATCATGATGGATATTTGCGGTTTTGGACATTATCGGGACGACTGCTGACCGAGATACGCGCGGTCACACGCCGACAGGCCTCGGCTGTGACGTCACTCTGCACGGATGCCGACTGCCGTCACGTGATCAGTGGTGATGCAAAGGGTTACGTGACGGTTTGGGACGTAGGAAGCTTTCTCTTGGACCCTCCCAAAGACAAGCCCCCACCTGACGATGAGATGACCGAGAAAAAGAAAGAACCCAAGAATGTGATCAAACAAGTCGTGTGTTGGCGCGCGCATCTCACCCGCGTGGTAGGCGTGGAGCACGTTGATAGCGCGGATGCCGTGGTCACTTCCTCCACTGATCTGTCTGTAAGGGTGTGGTACCGAGACACGGGCCACTTCATCGGGTTTTTCGGTCAGCCCCGCCTGTGGCACCTGCCGAGCGCCAAGTCCGTGCCCTCGACCCCAGTCCGACCTTATGACATCACCGAGTCGCCTATCAAAGCCTTGAAGAACCTCGCCAGTAAATCCAAGCACAAGCCGGAGAGCACTGTGGACTGCCCTCTGATGTTTGACGATAACAGATGGCATCCATTTCGACACTCTGCCCAACAAGAGACGAAGCCCAAACCGGGGAACATGAAATTCTTCGATTCACTCTCCAAGCCCAAGCATTATAACAGTCATCTTCAGAGCTCACGGACGGGTTCTCCGGAGACAGGTGCGGTGTTCCGAGCATTGCCTGTCTACAGGGTTGATTCTCCTGAGCGTCTGACTACACCTGCTGTTGCACACCAATCTTCGTGGCTTACAAACCATCAGAGCGGGGCACAGGTTAAGGCACAAGGCAAGACAAACTACACGTATAGATCAAGCCCACCCACAAAGGAGCACATAGTGTCCAGGTTCCCGCATCTTGTCCAGGCGAACAAGAGATAA

Transcript

rna-XM_048730276.1

CCCTTGATCATAATCGCCATGTTGCTGTGTTTGGAAAAGTAGAAGAACAATCGAAGTGTAACTTTTTGGACCCCGTGTGATGGCCAATCAATACCTCATTTAAGGAAAGTCACTTTAAAATGATTGATAAAATCGGTTGGAATTGGTGAGGGAATTATGCTCTCGAGGCAAAACAGCTCGCGCCCATATACTAGTGGAAGCTTTCGAACGAAGCTCGAActctttgacaaatttatcAAAGAGTTTACGTACGTTGACGAGGAATTGAATCCCGAAGAACGAAGGCAAATACTCCAGGATCGTCTAACTAACGGATATGAACCATTTTGCGAAGCTATACGGAATTTATTCGGAAACGACGTTAGTACACAAGATTTGAAGGCTTTATTTAGGAAAATCGCACTAAATCCTGACGCTAAAGTTGATTGGAGCGAGCTTTTTGGGATTGGTGGTCCTACTGATGAGGTACCAGACCTGCTGCTTAATGAGGACACTTCTTCTGTCCTCACCACCAGCAAGCGCAAGACTGTGGCAGAGGCAGGAGGAGATAAGAAAAGACGTGATATTGTGCAGTCAATTTTGCATGTCCCAAAGTATGACTTCTACATCACAGCATCCCAGAAAGGAATTATTTGCCAATGGTCTAATAAGTTTCGACTGCAAGCCTGTACCGATATTATGGAGTCTTCATGGGTGACTGGGTGTGGATTTCTTCCAAGTCTTCGTAGGATAGTAGCAACATCTGAAAGAGCGATTGCCTTATGGGACTATAGGGCCAAGCGAAAACAATCAacaatttatcaaattaaacCCATGGAGAACTCTCCTCAGTGTATGACATACATTCCATGGAAGGCAAACTCCATGAATGAAGACACCATTCTATTTGGAGATGATCAAGGTTATGTGAATATACTGACCATTTCCTCAAAGGACTTACACATGAAAAACTCATCTGCAAAAGGGGATTCTGCTGTTGTCACTATTGAGCCAAATAAGCTTAGTAGTGAAATAAAGAGAAGAAAGTTCTTTGATGACTGGGTGCTAAAGATCAAGTACTTCCCTCAATTAGAGATGTTCGGATGTTGCTCCCCTGGTAGTTCCTGTTCATTTATACTTGGTGGTGTGGATAGGGTACTCAACAATggGCCCGTACGAGAACTTGGTGTACCCAAAGGTGTCAACTGCTTTGATTACTGTACTAGAGCAAACGTCATTGTTACTGCAGGCGCAGATAAGATCGTTCGTATCTGGCACCCCCTGATATTCACTAGACCTACAGGCAAGCTACTAGGCCACCTCTTCACCATCGTGGAGATTGCCGTGAATGAAAAGGATCAGCAATTAATCAGCTTGTCAACGGCCAGGGTTTTTCGCGTCTGGGATCTACAGACTCTGACTTGTCTGCAGGTGTTTACAGATAATGAGGAAAGACCCGGAGAAAAGCGTATATCGGCTATGTTGTTTGACGCCAAACACGATAGGCTTATTACAGGGTGCAGTGTGATTGACACATGGCCATTAACCAGGGCAATACAAGATTCACTTCAAGTTCCGCATACCCATGATAGACCTATATCTCAGTTGCTGTACAACCCCCAAATGAACCAGGTGATCAGCGTGTGCACAGAGGGGGTGATGAAGGTGTGGGAGATGGAGACAGGCCAGATGGTCTACCAAGTTACTGATGCGCACGGCACATCCAATGAGGTCACTGCCATGAATGTGGATAACACAGGATATAGACTGATAACAGGAGCTTATGATGGTTCCATCAAAGCCTGGGATTTTGGGAGTGGGCAGCTTTACAAGAAGTACCCAGACGAGCCTGCGAAGAAAAGACAGGAGAACACCATCACGGGTCTAGTGTATCATACGGTGGACAACAAGCGATGCGTGCTGGTCTCTTCTTGGGGCCAAGGGATCACACTTTTAGAGGACTGTTATGACCTTCCGATGTTCAGTGAACTGCGGGTTTTCAGCGACTTGTATATACCCCAATCTCCAGCTAGCGAACCAGAAGGTGCAACACCTTTTATCTCTCGAGTAACTTTACCAGACATTAACCAGAAATCCAGTACGCCTGTGGCGACTCACGCGCTGTCCACGTGCGAGGTCACGTGCATGGAGGAGTTTGGTGATTCTGCGCTGTTTGCTGGGACGAGCGATGGCAACATTATCATGTGGAACTTGCAGACAGAGAAGATTATAACCAGGTTTGATTTGCCCCCGCTCAGCAGAAGCTCTCGTAGCGGGCGCTCCAAAAGACAGCGTCAGGATGAACGCCTTGTCCACGCTTGCCGAGTGATGGTACATAGAGTCAGAAGACCGATCATCTACGGCGAAACCAAGCATGCCATCCACACACTTCTAGAGGAATCAGAAGCAGATGAGACAGAGGAGAATGACGCTGCCATAGAGGTGTCCGCATCAGATGAGTTGAAAGAGAACGGCGATAAGGCTGACAAAAATAACGGCGATGATGAGAACAGGGACGAAAGCGACTCTAGTGACACTAACAAAGACGTGGAGATGAAGGAGGAAGGGTTTGAGAAAGGGGTGGaaggggagaaggagggggaTGAAGATGGGAGTGGCATGGAGGAAGGGGGACAGCCTGAGGATGAGGACTCCCCCTTTATTAGGATCAGTGACCCTGCTCTGGTGTCTGCCCATCATGATGGATATTTGCGGTTTTGGACATTATCGGGACGACTGCTGACCGAGATACGCGCGGTCACACGCCGACAGGCCTCGGCTGTGACGTCACTCTGCACGGATGCCGACTGCCGTCACGTGATCAGTGGTGATGCAAAGGGTTACGTGACGGTTTGGGACGTAGGAAGCTTTCTCTTGGACCCTCCCAAAGACAAGCCCCCACCTGACGATGAGATGAccgagaaaaagaaagaaccCAAGAATGTGATCAAACAAGTCGTGTGTTGGCGCGCGCATCTCACCCGCGTGGTAGGCGTGGAGCACGTTGATAGCGCGGATGCCGTGGTCACTTCCTCCACTGATCTGTCTGTAAGGGTGTGGTACCGAGACACGGGCCACTTCATCGGGTTTTTCGGTCAGCCCCGCCTGTGGCACCTGCCGAGCGCCAAGTCCGTGCCCTCGACCCCAGTCCGACCTTATGACATCACCGAGTCGCCTATCAAAGCCTTGAAGAACCTCGCCAGTAAATCCAAGCACAAGCCGGAGAGCACTGTGGACTGCCCTCTGATGTTTGACGATAACAGATGGCATCCATTTCGACACTCTGCCCAACAAGAGACGAAGCCCAAACCGGGGAACATGAAATTCTTCGATTCACTCTCCAAGCCCAAGCATTATAACAGTCATCTTCAGAGCTCACGGACGGGTTCTCCGGAGACAGGTGCGGTGTTCCGAGCATTGCCTGTCTACAGGGTTGATTCTCCTGAGCGTCTGACTACACCTGCTGTTGCACACCAATCTTCGTGGCTTACAAACCATCAGAGCGGGGCACAGGTTAAGGCACAAGGCAAGACAAACTACACGTATAGATCAAGCCCACCCACAAAGGAGCACATAGTGTCCAGGTTCCCGCATCTTGTCCAGGCGAACAAGAGATAACAACACGATAAGCTGGTTACCATGGAAAACAGTCCGTAGTAACCAGCCATAATTGACAGGTCGCCTGGCAACCACTGGGTATCTAGGTAAACAGTTTAAAATAGGTTGAAACTAACCAGAGTGtgtattttattgtattataGCATGTAAATTATAgctaaacatcaaaattttaatattttgtaaaatatataaaGATATAAATAGTGCTGTTCATAAAAA

Protein

UniProt (Swiss-Prot top hit)

UniProt accession	Description
Q9D565	WD repeat-containing protein 64 OS=Mus musculus OX=10090 GN=Wdr64 PE=2 SV=2
B1ANS9	WD repeat-containing protein 64 OS=Homo sapiens OX=9606 GN=WDR64 PE=1 SV=1

Gene family

Family type	Membership / link
Orthogroup (gene family)	OG0004884 (this species only)
Ubiquitin family	UBD\|Other\|Beta-prp · all ubiquitin genes in this species
Ubiquitin family	E3\|E3 adaptor Cullin RING\|CDC20 · all ubiquitin genes in this species
Ubiquitin family	E3\|E3 adaptor Cullin RING\|DWD · all ubiquitin genes in this species

Pfam domain

Pfam accession	Pfam name	Description	Type	Source
PF00400 all species →	WD40	WD domain, G-beta repeat	Repeat	Interproscan

InterPro

InterPro term	Type	Description	Source
IPR001680 all species →	Repeat	WD40 repeat	Interproscan
IPR015943 all species →	Homologous_superfamily	WD40/YVTN repeat-like-containing domain superfamily	Interproscan
IPR036322 all species →	Homologous_superfamily	WD40-repeat-containing domain superfamily	Interproscan
IPR051242 all species →	Family	WD repeat and EF-hand domain-containing protein	Interproscan
IPR019775 all species →	Conserved_site	WD40 repeat, conserved site	Interproscan

PANTHER

PANTHER term	Description	Source
PTHR44324 all species →	WD40 REPEAT DOMAIN 95	Interproscan

Gene Ontology

GO term	Category	Description	Source
GO:0005515 all species →	Molecular Function	protein binding	Interproscan

Search by domain instead of by gene. Any accession above (InterPro, Pfam, PANTHER, GO, KEGG) can be used as a query on the Functional Domain Search page, which searches all 148 annotated genomes at once.

KEGG pathway

KO	Enzyme	Enzyme ID	Pathway	Map ID	Source
K24751	WDR64; WD repeat-containing protein 64	-	Domain-containing proteins not elsewhere classified	ko04990	deepkoala

Searching by KO or pathway ID across all species is available on the KEGG Pathway page.