Gene detail

Detailed information of XP_048586268.1 in Nematostella vectensis

Genomic Location: NC_064040.1:4598756...4601279
NR annotation: XP_048586268.1, leucine-rich repeat-containing protein 57-like [Nematostella vectensis]

Gene Structure

More details in Jbrowse

Sequence

CDS

Transcript

rna-XM_048730311.1

ATGGGGAAGTAGAAAGTGTCCGTTTTAGATCAGCGGTAAGTTGTAGGAAAGACAGTTATATCTCACAGTATTATGGGACAATGATTATTTGATTTtacattataaaataattaagaTAGTGCAGCATAGAATTGTGTATCATCAGATAGTGCAGCATAGAATTTGTGCATCATCAGTCAACAACCCTGCGAATTCCGATGAACTTTTACCTTTTAacactaaaaaatattattcttttttagaaaaatgtgTCCCAGGTAGaaaagaaattgaaaaaataagtCTAAATATATGAACAACCAAACAATGAAGTAAATATTGCTTGGAATTTGAAGCCAGTTCTTCAGTTAtttaaactgttttctgtGCGCTAGCTGATGTGCACTGGTATGACACCATTTAGCGCaaagaatattttatttcttaaataaataataaattgttTTATAATAACCAACTTTACCTTGTGTACAATTTCTTCTTGATGACTATTGGTAAGTCtgttatgatgataatattttatttaaacaaaGCAGTACAAAAGAGCTTGGTGTAAATAAAACAGACATAAGTGGAATTAAAGAGCCCATGACAGCCACaccattgttattgttttctataAATACTGGAAGATAAATAATGTGATAAGATCTCAAAATAATCCTCTGaatcacattttttaaaattcatttactaaattaatagaaaatatctctaaaattaaaaaatcaatAATGGGATGGAAATGGTTGCCTTCTcaaacttggtattttgcctttttttaaactataCTGTATAAAGTTTATTTACTACCAtatgtaaattatttttttcactattatttgcaaaacaaatgttttatcATTTCAATTCAAATGCATATAGTATTTTCATCACATGCTACATGATTTCAAATTGATTCCCGTAGTACTGCTGTACCTTGATACAGGGCTCAATTTTCTACAGTACTATACACTAACTACATCCCTCACTATTTGCTGTGTAATGACTTGcgcaaataatattttaaagcaCTCTCTGTCTGGTTTTCAAACAGTAATTAGAGAAAGTGTATCTTTAATTATTAATCAAGTCATGAATTATATCATTTAAGTGTTTTTGTTCAGAATTCAAACTGAAATAATTTCAATAATTACATACCCTTCCTTGTTGTAAAAGTCTAAGTTACTGTACATTGATAACATtagttattgtttttctttcctgTTTGTCCCAGATTAACTTTTAGTTGGCATAATATTATCAATAGgttgttttgtttgaatgTCTAGAGGATCTTTTCAATGTATTGGATCTTTTCTTGATGCTTTTAATAATTAATCAGCCAAATAGCTGGCCTTGTTCCTAGCAACCAAACAGAATAGACAGCATGTCAACAGCTATACTTACATCAGTGATTGAAGGGTTTTTGACAGACGAAGATGGAAAGCACCAAAGCAACCTCAGATATTCCTGAAAAGGGAACAGTGGATTTTCTTATTCAGAGCtcaaaaaatttaaattctTTAGATTTAAGTTTTCAGAACTTGAGCAATTTTCCAACAGGTTTGCTTGAACTAACTCAGCTTGAGTATTTGTATCTAAAAGGATCTCAGATATCTGCTCTTCCTGAGGAATTCTTCAGGAAACTCATAAACTTGGTATGGCTTGACTTGAGAGACAATCAACTAGAAAACTTGCCCAATTCCATTGGTGAGCATGGCAGACTTAAGACTCTTCTCCTTCAAGGAAACAAGCTGAAAATTTTGCCATTAGAACTTGGGTTATTAAACTCTCTCAGCGCCATCAGTCTTTCTGGGAACCCTATTGAGGATCCCCCAGAGGATGTGATCAAGGAAGGAGTGACAAACATCCAGGTCTTTCTTCTGAAGAAACTTGGTTTCCAAGAAGTCGAGGTCAAGGGAGATAACGAATCCATAGATTCAGACTCAGATTTTGAGGAGTGTATTCCCTTAAGAGATGCTAAAAAGAGAAATAAGACACCCTTAAAAAACAGATGTAGAACTCCAAATAATGAAGACAAAGATGTTGGATTTCGGGCTACAGCTGGCGCTGATCCTGAGACACTGCCCCCTAGGGCAAGTGTGTCGTCGCCAGTGGAGTTCAGACCACTGCTGCCACCGGCTGCCTCTACCCATCCAGCAATATATGGGTCATGGCTTGGGGGAAACCCTAACTTCTACATCCACAAACCCTGGAAGACTGGAACATTCTTAACTAGGACTAAAGTGAATGGGAAATCACAAAATATTCATTCTGCCTAAAAGAGGAATTTATGGATGATTAGGGGTGTGGTTTTGTGAGATGTGAAAGGGGGTAAACATTTTGAATATCAATAATTTATTGACATAGACAATACTGCCTACTCTAAAAAGCTCTATATCTTGAACTTTAATATCTTCAACTTTGTCATCAGGAATTCAAATAGTATTAGTCCTCAGTGTAAACTAAATAAGTCTGCATTCATCAGCTTAACATCCAATTAAAATGACCTAACCATAAA

Protein

Pfam domain

Pfam accession	Pfam name	Description	Type	Source
PF13855	LRR_8	Leucine rich repeat	Repeat	Interproscan

InterPro

InterPro term	Type	Description	Source
IPR003591	Repeat	Leucine-rich repeat, typical subtype	Interproscan
IPR050715	Family	Leucine-rich repeat and signaling effector domain-containing protein	Interproscan
IPR001611	Repeat	Leucine-rich repeat	Interproscan
IPR032675	Homologous_superfamily	Leucine-rich repeat domain superfamily	Interproscan

PANTHER

PANTHER term	Description	Source
PTHR45752	LEUCINE-RICH REPEAT-CONTAINING	Interproscan

Gene Ontology

GO terms	Category	Description	Source
GO:0007165	Biological Process	signal transduction	Interproscan
GO:0005515	Molecular Function	protein binding	Interproscan