Detailed information of XP_048587194.1 in Nematostella vectensis

Genomic Location: NC_064041.1:2338822...2378687
NR annotation: XP_048587194.1, collagen alpha-1(I) chain [Nematostella vectensis]


 Gene Structure
More details in Jbrowse  Sequence
CDS
Transcript
Protein
 Uniprot
Uniprot termDescription
Q9JI03Collagen alpha-1(V) chain OS=Rattus norvegicus OX=10116 GN=Col5a1 PE=1 SV=1
Q60467Collagen alpha-1(V) chain OS=Cricetulus longicaudatus OX=10030 GN=COL5A1 PE=2 SV=1
P25940Collagen alpha-3(V) chain OS=Homo sapiens OX=9606 GN=COL5A3 PE=1 SV=3

 Pfam domain
Pfam accessionPfam nameDescriptionTypeSource
PF01410COLFIFibrillar collagen C-terminal domainFamilyInterproscan
PF01391CollagenCollagen triple helix repeat (20 copies)RepeatInterproscan

 InterPro
InterPro termTypeDescriptionSource
IPR000885DomainFibrillar collagen, C-terminalInterproscan
IPR050149FamilyCollagen superfamilyInterproscan
IPR008160RepeatCollagen triple helix repeatInterproscan

 PANTHER
PANTHER termDescriptionSource
PTHR24023COLLAGEN ALPHAInterproscan

 Gene Ontology
GO termsCategoryDescriptionSource
GO:0005201Molecular Functionextracellular matrix structural constituentInterproscan
GO:0005615Cellular Componentextracellular spaceInterproscan
GO:0030020Molecular Functionextracellular matrix structural constituent conferring tensile strengthInterproscan
GO:0030198Biological Processextracellular matrix organizationInterproscan
GO:0031012Cellular Componentextracellular matrixInterproscan
GO:0062023Cellular Componentcollagen-containing extracellular matrixInterproscan

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