Gene detail

Detailed information of XP_048587296.1 in Nematostella vectensis

Genomic Location: NC_064041.1:5615392...5623205
NR annotation: XP_048587296.1, uncharacterized protein LOC116613986 isoform X1 [Nematostella vectensis]
Species Nematostella vectensis · all data for this species · gene families

Gene Structure

More details in JBrowse

Sequence

CDS

LOC116613986

ATGAGTGTGATGGTCAAAAAAGAGAGTGAACAAGGTCATTGCACTACTCCTGGACAAGAAGAGACTTCGCAAAGCAAGGTTAACGCTCCCTGCCGAAGTGAAGATGGATCGTTACACAACAAAAACAACGAGAAGAGCAAGGATGAAGATACCACAGGGAGCCCGGTTATTAAATCCGCCAAGCTCACAATCAAACAAGAACGAGTCGACGACGAGGAGGAAATATCTAACTGTCACTATAGCAACCGACGTGACAGCCGTGACGACGACTTGAATAGCAACACTTCGGGTAACCATGACGACGAGGCCTATTTTCGTGAGACTTTAGCGGACGGCGATATCACAGTTGTACGAATTCCCGTCAACGGTCACGATGAGCACTTCTCGTATCCTCGTCGTGTCCCCGTAATGTACCCGATGCATTATCGAGGGGCAAGTCACAGCAGGGGGTCTGCAAGCCCGACGGGTTATCGATTGGAAGACAACGAGCTCGCTCCGGATGCTAGACGAAAGATTTACGAAGGTGGCTGTTGGAGTGAGTCTCGTCAGGCAAGAAAAGCTTACTCGCCACTACCACCAAGTGCCCTGCACGACAAAACATCCACTAGGGAGGGAGACAAGAGGCGTAATTTGTTCCCGACATACGCACCGGAAGTTGATAAAGCGAAGCATCCAAATGGCTTCCGGAAGGACGCGAGACGTGAGCGGCCCCACGTGCGCGGGGAGGACGGAGAGGAGGAGTCTCTATGGAAACAGGTTCAGCGGTATCGTCACCGAAAGCGGCCAGTACTTGGCAAGCTCCACATTCCGTCACAAGAGGAAACCATTTTCATGCAATACAACGAGATCCGGGAACGTCGTCTTCGAGAGGGACGCTATTTGCCGCGGGAACCCTGCGGACGTTCGGAGACAATTGAGAAGGAGGAGCCCGCACCAGTCTCTCCTCCATCGCATCCCTCTAGTGATGACGACAGCAACCGGAAGCAGGTCTCGGAAGCAGACGTTACGTCATCGAATGCGCCTAGTGAGACAAGGAGAGGAGAAAATGACTTAGAGGAAGCGCCGACCATGTGCAATGGGGATATGCTGCTTACCACAATAACTGCAAATACGGACTTACGCATGGGAGAGTCTCCCGGGGACTTGCGCACCAAACCAGCTGTTACTTCATCAAACCCGGCAGTAATCAGTGAGTCTGATGTCGTATCCTTCAATTCGGGTCGAAATAGGATGACGCCCTCTGCACCTTTGCCACGCCCATATACCCCTTTATACCCTGAGGTGCCTTGTGACTCACGCCGACCCCCAAGGTCAGATACATACAATGCCCTGTGCGGTAGAGACGCTCCCTACACTCCTGGGGGACAATGTAGGCATAACAACTGTAGCGAGTATGACGTCAGCTACGGTTCGGATGAATGTTGCCATGACCACCCGGAACGAAGACGCGTAGGATGTAGTCACCATTGTTGCTACCCAACTGAGCAGAAGGCAATGCGCAAGCGCAGAATGAGCGACCCGGATGAATACTGGTCTAAGCTCGCGAAAACTCGAGCATCGGACTCTCCCATCGCATGCAGAGATTCTAGTCCTTTCCAAAACGAAACGCATTCGCCGTCATCTTCAGACTCCGTGGATATCATTGACTCCGAACAACTTCGTGGTTCCCGATTTTCCACCGAAGATCCTCCGTACGAGTGCGAAAACTCTCGGGAGTCTGTCGTGTCTTCCGATACCGTCGCGGATAAGCGGAAAGACCGTGGCGATGGCTCGGCTCAGATGAACGAAGATGACGTGGTCTGTCAAGTAAACGGGCTGTTCTCGTTGCCAGGTTACCGTGAAACGAAATACAACATCAGTCTGGGAGAACTGAAGCGTCGCACAGGGCAGCCCGAAACCCTTACAAGAGTAGAAATGATCTCCTACGTGCGACAAGCGAAAACCTCAGGTAGAATTCTACTGGACAAGAATAGCATTACTACATCGAACCGCTCGCACCCGACCATCATGTCGCGCGTGTGCGAGCGTGAGGCACAGGTCCTCGCGTGTGGGTTGCATAAGATGAACATGGAGTATCTGCCACTTAGAAAGATGGCGCAGAGGGCGGTGGGCGTTTACAGGTCACGTGGCTGCGAGGGGTGCCAGGAGTGCAGGCTCAGAATGAGGCGGAAAATTGTGGATGTGGAGATCACGAGAAACATGCTAAGAGAAATGTCACGCGTCACGCAAGAGTCAAGCTACAGCGGGATGCTCGACGCTTTCGACCTCGCATCACACACGTTCGGCACTCCTAACCTGCTGAACAACATCAAGCTTATGGACGAGTATTTTAGGCATCTTCTACTCGCGCTAGACGACGAGCACTGA

Transcript

rna-XM_048731339.1

GTTGTATATAGCCCGAGGCACGGCGGGCACTTGGAGTAACTCCGGGCTTCGGCTGGCCCCCTAACCGAGTCCACATGAAGCGTGCTGTGAACAACTACGCATAAATTGCAAATAGCTACCACATCTGAATAAGAGCGTTTTTTCGCCCGTACTGTCAAGAAACCGCGCGCGCCGTTCTGGAATGGACATTTATCATCTCGGTACTTGCTAGATATTGGTGTCGTTCATCCGTAGCGGGTAAAGTGCCTTCATATGAGGCTAGAGAAGAGGAAAAAGTTATAAAGAAAAGATGAGGACTTTGCGCGTGTGTGGAGTTTCTACAACGTGCTGTTGAATTTGATCTGGAAATATCAGGAAACACGGTCCAATCTTCTGCTATGAGTGTGATGGTCAAAAAAGAGAGTGAACAAGGTCATTGCACTACTCCTGGACAAGAAGAGACTTCGCAAAGCAAGGTTAACGCTCCCTGCCGAAGTGAAGATGGATCGTtacacaacaaaaacaacgaGAAGAGCAAGGaTGAAgataccacagggagcccggtTATTAAATCCGCCAAGCTCACAATCAAACAAGAACGAGTCGACGACGAGGAGGAAATATCTAACTGTCACTATAGCAACCGACGTGACAGCCGTGACGACGACTTGAATAGCAACACTTCGGGTAACCATGACGACGAGGCCTATTTTCGTGAGACTTTAGCGGACGGcgatatcacagttgtacgaaTTCCCGTCAACGGTCACGATGAGCACTTCTCGTATCCTCGTCGTGTCCCCGTAATGTACCCGATGCATTATCGAGGGGCAAGTCACAGCAGGGGGTCTGCAAGCCCGACGGGTTATCGATTGGAAGACAACGAGCTCGCTCCGGATGCTAGACGAAAGATTTACGAAGGTGGCTGTTGGAGTGAGTCTCGTCAGGCAAGAAAAGCTTACTCGCCACTACCACCAAGTGCCCTGCACGACAAAACATCCACTAGGGAGGGAGACAAGAGGCGTAATTTGTTCCCGACATACGCACCGGAAGTTGATAAAGCGAAGCATCCAAATGGCTTCCGGAAGGACGCGAGACGTGAGCGGCCCCACGTGCGCGGGGAGGACGGAGAGGAGGAGTCTCTATGGAAACAGGTTCAGCGGTATCGTCACCGAAAGCGGCCAGTACTTGGCAAGCTCCACATTCCGTCACAAGAGGAAACCATTTTCATGCAATACAACGAGATCCGGGAACGTCGTCTTCGAGAGGGACGCTATTTGCCGCGGGAACCCTGCGGACGTTCGGAGACAATTGAGAAGGAGGAGCCCGCACCAGTCTCTCCTCCATCGCATCCCTCTAGTGATGACGACAGCAACCGGAAGCAGGTCTCGGAAGCAGACGTTACGTCATCGAATGCGCCTAGTGAGACAAGGAGAGGAGAAAATGACTTAGAGGAAGCGCCGACCATGTGCAATGGGGATATGCTGCTTACCACAATAACTGCAAATACGGACTTACGCATGGGAGAGTCTCCCGGGGACTTGCGCACCAAACCAGCTGTTACTTCATCAAACCCGGCAGTAATCAGTGAGTCTGATGTCGTATCCTTCAATTCGGGTCGAAATAGGATGACGCCCTCTGCACCTTTGCCACGCCCATATACCCCTTTATACCCTGAGGTGCCTTGTGACTCACGCCGACCCCCAAGGTCAGATACATACAATGCCCTGTGCGGTAGAGACGCTCCCTACACTCCTGGGGGACAATGTAGGCATAACAACTGTAGCGAGTATGACGTCAGCTACGGTTCGGATGAATGTTGCCATGACCACCCGGAACGAAGACGCGTAGGATGTAGTCACCATTGTTGCTACCCAACTGAGCAGAAGGCAATGCGCAAGCGCAGAATGAGCGACCCGGATGAATACTGGTCTAAGCTCGCGAAAACTCGAGCATCGGACTCTCCCATCGCATGCAGAGATTCTAGTCCTTTCCAAAACGAAACGCATTCGCCGTCATCTTCAGACTCCGTGGATATCATTGACTCCGAACAACTTCGTGGTTCCCGATTTTCCACCGAAGATCCTCCGTACGAGTGCGAAAACTCTCGGGAGTCTGTCGTGTCTTCCGATACCGTCGCGGATAAGCGGAAAGACCGTGGCGATGGCTCGGCTCAGATGAACGAAGATGACGTGGTCTGTCAAGTAAACGGGCTGTTCTCGTTGCCAGGTTACCGTGAAACGAAATACAACATCAGTCTGGGAGAACTGAAGCGTCGCACAGGGCAGCCCGAAACCCTTACAAGAGTAGAAATGATCTCCTACGTGCGACAAGCGAAAACCTCAGGTAGAATTCTACTGGACAAGAATAGCATTACTACATCGAACCGCTCGCACCCGACCATCATGTCGCGCGTGTGCGAGCGTGAGGCACAGGTCCTCGCGTGTGGGTTGCATAAGATGAACATGGAGTATCTGCCACTTAGAAAGATGGCGCAGAGGGCGGTGGGCGTTTACAGGTCACGTGGCTGCGAGGGGTGCCAGGAGTGCAGGCTCAGAATGAGGCGGAAAATTGTGGATGTGGAGATCACGAgAAACATGCTAAGAGAAATGTCACGCGTCACGCAAGAGTCAAGCTACAGCGGGATGCTCGACGCTTTCGACCTCGCATCACACACGTTCGGCACTCCTAACCTGCTGAACAACATCAAGCTTATGGACGAGTATTTTAGGCATCTTCTACTCGCGCTAGACGACGAGCACTGAGCTCTCATATTTGACGACGCATACGATGTCACATAAGAACTGAATCCGTATACTCTCATCAGCCTAACTCCTAATGTGACGTCACTTAGACTGTTGCGTCATGACCTCTTAGATGCCATTAAAACTGAATCCGTTTACACTTATCAGtgaatatatatatgtaaCGTTCCATATAATGTCATGACCTCATATATGTCATAAAGAACTTCACCCGAGCATCACTTATCAGtgaatatatatatgtaaCGTTCCATATAATGTCATGACGTCATATATGTCATGAAGAACTTAACCCGAGCATCACTTATCAGtgaatatatatatgtaaCGTTCCATATAATGTCATGACCTCATATATGTCATAAAGAACTTCACCCGAGCATCACTTATCAgttaatatatatatgtaaCGTTCCATATAATGTCATGACCTCATATATGTCATAAAGAACTTAACCCGAGCATCACTTATCAGtgaatatatatatgtaaCGTTCCATATAATGTCATGACCTCATATATGTCATGAACTTCACCCGAGCATCACTTGAGTCCTGTGTAGTAGGAGCATATCACCCATTGTATTTCGTAGGTTGTCTCAAAGTAACAAGGGTGCGGTATGAATAAAGTGATGTAGTTCAGTAATAGACAGTGTATAGTATTTACCTTCACATTCGGAAGGGAAAGATAATAAAGTTATATTCACTGTG

Protein

UniProt (Swiss-Prot top hit)

No Swiss-Prot hit above the reporting threshold for this gene.

Gene family

Family type	Membership / link
Orthogroup (gene family)	OG0002734 (this species only)

Pfam domain

Pfam accession	Pfam name	Description	Type	Source
PF03299 all species →	TF_AP-2	Transcription factor AP-2	Family	Interproscan

InterPro

InterPro term	Type	Description	Source
IPR013854 all species →	Domain	Transcription factor AP-2, C-terminal	Interproscan

PANTHER

No PANTHER signature was detected for XP_048587296.1. This gene does have a gene model — the search simply returned no hit.

Gene Ontology

No Gene Ontology signature was detected for XP_048587296.1. This gene does have a gene model — the search simply returned no hit.

Search by domain instead of by gene. Any accession above (InterPro, Pfam, PANTHER, GO, KEGG) can be used as a query on the Functional Domain Search page, which searches all 148 annotated genomes at once.

KEGG pathway

No KEGG orthology assignment for XP_048587296.1.

Searching by KO or pathway ID across all species is available on the KEGG Pathway page.

Expression pattern (RNA-seq)

Transcript abundance of XP_048587296.1 across 48 RNA-seq samples of Nematostella vectensis. Values are TPM (transcripts per million) from the StringTie quantification; one bar is one sample, grouped and coloured by condition, sorted by expression within each group.

48Samples

38TPM > 0

16Conditions

13.5Max TPM

3.8Mean TPM

By condition

Condition	Samples	TPM > 0	Mean TPM	Max TPM
whole 6 week old aboral regenerate · regenerate 96hpa	3	2	3.66	6.33
whole 6 week old aboral regenerate · regenerate 144hpa	3	3	3.32	4.68
whole 6 week old aboral regenerate · regenerate 0hpa	3	3	4.11	5.39
whole 6 week old aboral regenerate · regenerate 2hpa	3	3	3.68	3.97
whole 6 week old aboral regenerate · regenerate uncut	3	3	4.16	5.02
whole 6 week old aboral regenerate · regenerate 4hpa	3	1	1.21	3.63
whole 6 week old aboral regenerate · regenerate 120hpa	3	2	3.17	4.84
whole 6 week old aboral regenerate · regenerate 36hpa	3	3	5.58	7.45
whole 6 week old aboral regenerate · regenerate 24hpa	3	2	3.49	5.57
whole 6 week old aboral regenerate · regenerate 20hpa	3	2	3.74	6.07
whole 6 week old aboral regenerate · regenerate 16hpa	3	3	4.54	5.06
whole 6 week old aboral regenerate · regenerate 72hpa	3	2	3.50	6.16
whole 6 week old aboral regenerate · regenerate 60hpa	3	3	5.09	5.25
whole 6 week old aboral regenerate · regenerate 48hpa	3	3	9.03	13.49
whole 6 week old aboral regenerate · regenerate 8hpa	3	2	1.71	2.57
whole 6 week old aboral regenerate · regenerate 12hpa	3	1	1.54	4.63

Per sample · hover a bar for the full sample record · show / hide the sample table

SRA run	Condition	Tissue	Developmental stage	Treatment	Study	TPM
SRR6320836	whole 6 week old aboral regenerate · regenerate 96hpa	whole 6 week old aboral regenerate	six weeks	regenerate 96hpa	SRP125570	6.33
SRR6320863	whole 6 week old aboral regenerate · regenerate 96hpa	whole 6 week old aboral regenerate	six weeks	regenerate 96hpa	SRP125570	4.65
SRR6320837	whole 6 week old aboral regenerate · regenerate 96hpa	whole 6 week old aboral regenerate	six weeks	regenerate 96hpa	SRP125570	0.00
SRR6320847	whole 6 week old aboral regenerate · regenerate 144hpa	whole 6 week old aboral regenerate	six weeks	regenerate 144hpa	SRP125570	4.68
SRR6320841	whole 6 week old aboral regenerate · regenerate 144hpa	whole 6 week old aboral regenerate	six weeks	regenerate 144hpa	SRP125570	3.02
SRR6320838	whole 6 week old aboral regenerate · regenerate 144hpa	whole 6 week old aboral regenerate	six weeks	regenerate 144hpa	SRP125570	2.27
SRR6320846	whole 6 week old aboral regenerate · regenerate 0hpa	whole 6 week old aboral regenerate	six weeks	regenerate 0hpa	SRP125570	5.39
SRR6320840	whole 6 week old aboral regenerate · regenerate 0hpa	whole 6 week old aboral regenerate	six weeks	regenerate 0hpa	SRP125570	4.08
SRR6320839	whole 6 week old aboral regenerate · regenerate 0hpa	whole 6 week old aboral regenerate	six weeks	regenerate 0hpa	SRP125570	2.87
SRR6320848	whole 6 week old aboral regenerate · regenerate 2hpa	whole 6 week old aboral regenerate	six weeks	regenerate 2hpa	SRP125570	3.97
SRR6320842	whole 6 week old aboral regenerate · regenerate 2hpa	whole 6 week old aboral regenerate	six weeks	regenerate 2hpa	SRP125570	3.78
SRR6320861	whole 6 week old aboral regenerate · regenerate 2hpa	whole 6 week old aboral regenerate	six weeks	regenerate 2hpa	SRP125570	3.29
SRR6320843	whole 6 week old aboral regenerate · regenerate uncut	whole 6 week old aboral regenerate	six weeks	regenerate uncut	SRP125570	5.02
SRR6320844	whole 6 week old aboral regenerate · regenerate uncut	whole 6 week old aboral regenerate	six weeks	regenerate uncut	SRP125570	4.53
SRR6320845	whole 6 week old aboral regenerate · regenerate uncut	whole 6 week old aboral regenerate	six weeks	regenerate uncut	SRP125570	2.94
SRR6320872	whole 6 week old aboral regenerate · regenerate 4hpa	whole 6 week old aboral regenerate	six weeks	regenerate 4hpa	SRP125570	3.63
SRR6320849	whole 6 week old aboral regenerate · regenerate 4hpa	whole 6 week old aboral regenerate	six weeks	regenerate 4hpa	SRP125570	0.00
SRR6320873	whole 6 week old aboral regenerate · regenerate 4hpa	whole 6 week old aboral regenerate	six weeks	regenerate 4hpa	SRP125570	0.00
SRR6320882	whole 6 week old aboral regenerate · regenerate 120hpa	whole 6 week old aboral regenerate	six weeks	regenerate 120hpa	SRP125570	4.84
SRR6320883	whole 6 week old aboral regenerate · regenerate 120hpa	whole 6 week old aboral regenerate	six weeks	regenerate 120hpa	SRP125570	4.67
SRR6320850	whole 6 week old aboral regenerate · regenerate 120hpa	whole 6 week old aboral regenerate	six weeks	regenerate 120hpa	SRP125570	0.00
SRR6320851	whole 6 week old aboral regenerate · regenerate 36hpa	whole 6 week old aboral regenerate	six weeks	regenerate 36hpa	SRP125570	7.45
SRR6320852	whole 6 week old aboral regenerate · regenerate 36hpa	whole 6 week old aboral regenerate	six weeks	regenerate 36hpa	SRP125570	5.59
SRR6320855	whole 6 week old aboral regenerate · regenerate 36hpa	whole 6 week old aboral regenerate	six weeks	regenerate 36hpa	SRP125570	3.71
SRR6320854	whole 6 week old aboral regenerate · regenerate 24hpa	whole 6 week old aboral regenerate	six weeks	regenerate 24hpa	SRP125570	5.57
SRR6320853	whole 6 week old aboral regenerate · regenerate 24hpa	whole 6 week old aboral regenerate	six weeks	regenerate 24hpa	SRP125570	4.90
SRR6320856	whole 6 week old aboral regenerate · regenerate 24hpa	whole 6 week old aboral regenerate	six weeks	regenerate 24hpa	SRP125570	0.00
SRR6320857	whole 6 week old aboral regenerate · regenerate 20hpa	whole 6 week old aboral regenerate	six weeks	regenerate 20hpa	SRP125570	6.07
SRR6320860	whole 6 week old aboral regenerate · regenerate 20hpa	whole 6 week old aboral regenerate	six weeks	regenerate 20hpa	SRP125570	5.15
SRR6320859	whole 6 week old aboral regenerate · regenerate 20hpa	whole 6 week old aboral regenerate	six weeks	regenerate 20hpa	SRP125570	0.00
SRR6320880	whole 6 week old aboral regenerate · regenerate 16hpa	whole 6 week old aboral regenerate	six weeks	regenerate 16hpa	SRP125570	5.06
SRR6320858	whole 6 week old aboral regenerate · regenerate 16hpa	whole 6 week old aboral regenerate	six weeks	regenerate 16hpa	SRP125570	4.60
SRR6320881	whole 6 week old aboral regenerate · regenerate 16hpa	whole 6 week old aboral regenerate	six weeks	regenerate 16hpa	SRP125570	3.95
SRR6320862	whole 6 week old aboral regenerate · regenerate 72hpa	whole 6 week old aboral regenerate	six weeks	regenerate 72hpa	SRP125570	6.16
SRR6320865	whole 6 week old aboral regenerate · regenerate 72hpa	whole 6 week old aboral regenerate	six weeks	regenerate 72hpa	SRP125570	4.34
SRR6320864	whole 6 week old aboral regenerate · regenerate 72hpa	whole 6 week old aboral regenerate	six weeks	regenerate 72hpa	SRP125570	0.00
SRR6320867	whole 6 week old aboral regenerate · regenerate 60hpa	whole 6 week old aboral regenerate	six weeks	regenerate 60hpa	SRP125570	5.25
SRR6320866	whole 6 week old aboral regenerate · regenerate 60hpa	whole 6 week old aboral regenerate	six weeks	regenerate 60hpa	SRP125570	5.10
SRR6320869	whole 6 week old aboral regenerate · regenerate 60hpa	whole 6 week old aboral regenerate	six weeks	regenerate 60hpa	SRP125570	4.91
SRR6320868	whole 6 week old aboral regenerate · regenerate 48hpa	whole 6 week old aboral regenerate	six weeks	regenerate 48hpa	SRP125570	13.49
SRR6320871	whole 6 week old aboral regenerate · regenerate 48hpa	whole 6 week old aboral regenerate	six weeks	regenerate 48hpa	SRP125570	7.20
SRR6320870	whole 6 week old aboral regenerate · regenerate 48hpa	whole 6 week old aboral regenerate	six weeks	regenerate 48hpa	SRP125570	6.40
SRR6320875	whole 6 week old aboral regenerate · regenerate 8hpa	whole 6 week old aboral regenerate	six weeks	regenerate 8hpa	SRP125570	2.57
SRR6320874	whole 6 week old aboral regenerate · regenerate 8hpa	whole 6 week old aboral regenerate	six weeks	regenerate 8hpa	SRP125570	2.57
SRR6320876	whole 6 week old aboral regenerate · regenerate 8hpa	whole 6 week old aboral regenerate	six weeks	regenerate 8hpa	SRP125570	0.00
SRR6320877	whole 6 week old aboral regenerate · regenerate 12hpa	whole 6 week old aboral regenerate	six weeks	regenerate 12hpa	SRP125570	4.63
SRR6320878	whole 6 week old aboral regenerate · regenerate 12hpa	whole 6 week old aboral regenerate	six weeks	regenerate 12hpa	SRP125570	0.00
SRR6320879	whole 6 week old aboral regenerate · regenerate 12hpa	whole 6 week old aboral regenerate	six weeks	regenerate 12hpa	SRP125570	0.00

Source: CnidoSite RNA-seq expression matrices (NVECT_TPM, StringTie quantification over 48 runs), joined to SRA sample metadata. Samples whose tissue/treatment is not recorded in the source metadata are grouped by the descriptor carried in the expression matrix itself.