Gene detail

Detailed information of XP_048587455.1 in Nematostella vectensis

Genomic Location: NC_064034.1:7748516...7755620
NR annotation: XP_048587455.1, glutamate receptor 2-like isoform X1 [Nematostella vectensis]

Gene Structure

More details in Jbrowse

Sequence

CDS

Transcript

rna-XM_048731498.1

GTGCGACTGCAGGGTTTCAAGCGTTGCAAAAATGTTCGCCCTCAGTAATTTGGTGTTTCTGCTATTATCGATGCAGCAAGAACAACCGAGAACATACATTATCCTCAGCGATGAATATTTTCCAGCTCAAAATATATCGAGTAGTTTCCCCAACACTCAGGTTAACATTAACATAATCTCGGCGAAAAAAGCAAATTTTGTCAATTACTTGGAAGTGTTTTGTGGAAACCACAAAGATACTTTTATAATTGGATGTCTTCAAAGCCAACTTGATCACTTATTTGTGGAATTGGCTCGAGGTTTCTCGATGCCATTTATCTGTGTTGGAGACACGCTCACCAAAACAAGCCTTCAGGCTCAACCATACGTCACACTCGGCGCTTCGCCTGTCGCGGTGTCCAGCATTATCTCGCAAATGGCGGACATTTCTTCAGCTACGCATGTATTTCTTCTCGGGACTCGGACCCAGACAAACAGCATCCTACCTGAGCTGCTGTCGACAAAGTTAACTATTAACATTACCTACTCGGCCATCGCTGgagattttgaaaacaatCTAAACAATGCCCTCCAAAAGATTGATTCTAACAAAGATTTTGTGCTAGTTGTGTTCCTCGAGAGCTCTATTATAGATAGAGCCTTGAGGGACGCCATATACAATTTTCATTCACTCGTGAAGACTGTTATAGTCGGCGACGGGAGTGAGGAAAGACTGGAGCTGGATTCCAAAAGAAGCGATGTTCTACTTATCAAAatggaaggttacatggacgTTCTAACAAGCGATGCGATAAGACTAACGGATGCAACGGTGAAAAAGTCCTCGAATAACAAGACGCACGATTGCTTTTCTGGAACGGATCAAGACAATTTGTCATTATTTAATCGGTGAGTCATTACTCGACATTACCCTCGTTTTCACCTTAATGCATGTTCTCATTGGTTGCCGAATCGTTAGAAGTAGGCAGGCAGAACGCTGTTGTAGATATACTACGGCGAACCGACAAGGGCTGTTGGCAAACTAACCAGGGTTGTCGGGGAACTGGTTTGTCGGCAAAATGACCACAATTCGTTTTACTCGCCATATTCGAATAGCCTGTACAGTTTGGCATCAAGTTCTCTATTATAATCTTAGAGAGGGCCTGCAATTCCGCACAATGttttcgaaaatatcgcaatatATTTTCATGTTTGTTACACATTATACCGCaacacaacacacaacaaCAGATCGACACCTGCACAAcgtcataatcaccatcatcatttatttagctattatttcaaatagctttGAGGGCGCCGAGAAACTACTTAAACAAATCAACATTCAGCTTTCACCTGTTGGAGATCAAGCAAACACGGAATTCATAATAAATAAGTTGTTGCCATTCGGCCAAGGTGTCGAAAATGTCGGCATGGTGGCCGGTGGCAAAGTAGAGATGTTTGATAACCTGCTGAGGCCAAAGCTGAAGTGCAAGGATCCAAATGCACTCTGTGTTGTCGTAATACTGGACGTACTTTGCTATAAAAGCGTTTATGAAGTTGAGTCATCCAAGGAGTGCATCCTATCGCATATGTGTACAATGTTCAGCCACGAGATGGATGACGATAATGCGACAATAACTCGAGCAAAGCATTTCTGCTGCAAAGGATTTGTTATTGATATTCTCATAAGCTTGGAGAGGGACTTGGACTTTAAGGCTGAAGTCTACATTGTCGAAGACGGAAAATATGGTGTTTATGACAGGAATTCGAAAAGGTGGTATGGAATGATCGGGGATTTAATTGACGGCAAGGCTGAGCTTGCTCTCACTAGTTTAGAATTGTCTCTTGCGAGGGAAGAAGTGGTTGATTTTTCGAATGTCCCTTTTATATATCACGACCGAGTCATCGTGATGGCTGTAAAAAGTTCTTATACGTCGCACGACTGGTTCGGGTTCACGAAGCCGTTCAGTACTTCCTTATGGATCACATTTGGAGCTGCAAGTGTTATTCTGGTCATTGTCGTTTGGATCATCGACAAGTACAGTCCCTATGGCCACAAGCATCACTTCCAAGTGTTTACTCTGCGCGACAGTTTCTCGTATCTCTCCAGCACCGTGTTTAAGATCAACCTGGACGACGTGACAGCGGGCACGCCCCAGTGCAAGGTTTACCTATGCCGTGTTCTCCTTTGGGACTCTGGTTTTAATTTCTACCTACATCGCAAATCTAACGGTGTCCTTGATGGAAGTAAAAGTTACATTTCCAATAACGGGTATACGTGAT

Protein

Uniprot

Uniprot term	Description
Q91ZU9	Glutamate receptor ionotropic, NMDA 3B OS=Mus musculus OX=10090 GN=Grin3b PE=1 SV=1
B3LZ39	Glutamate [NMDA] receptor subunit 1 OS=Drosophila ananassae OX=7217 GN=Nmdar1 PE=3 SV=1
Q8VHN2	Glutamate receptor ionotropic, NMDA 3B OS=Rattus norvegicus OX=10116 GN=Grin3b PE=1 SV=2

Pfam domain

Pfam accession	Pfam name	Description	Type	Source
PF10613	Lig_chan-Glu_bd	Ligated ion channel L-glutamate- and glycine-binding site	Domain	Interproscan

InterPro

InterPro term	Type	Description	Source
IPR001508	Family	Ionotropic glutamate receptor, metazoa	Interproscan
IPR019594	Domain	Ionotropic glutamate receptor, L-glutamate and glycine-binding domain	Interproscan
IPR015683	Family	Ionotropic glutamate receptor	Interproscan
IPR001320	Domain	Ionotropic glutamate receptor, C-terminal	Interproscan

PANTHER

PANTHER term	Description	Source
PTHR18966	IONOTROPIC GLUTAMATE RECEPTOR	Interproscan

Gene Ontology

GO terms	Category	Description	Source
GO:0005216	Molecular Function	monoatomic ion channel activity	Interproscan
GO:0006811	Biological Process	monoatomic ion transport	Interproscan
GO:0016020	Cellular Component	membrane	Interproscan
GO:0038023	Molecular Function	signaling receptor activity	Interproscan
GO:0015276	Molecular Function	ligand-gated monoatomic ion channel activity	Interproscan
GO:0005886	Cellular Component	plasma membrane	Interproscan
GO:0008066	Molecular Function	glutamate receptor activity	Interproscan
GO:0035249	Biological Process	synaptic transmission, glutamatergic	Interproscan
GO:0050804	Biological Process	modulation of chemical synaptic transmission	Interproscan
GO:0098839	Cellular Component	postsynaptic density membrane	Interproscan
GO:1904315	Molecular Function	transmitter-gated monoatomic ion channel activity involved in regulation of postsynaptic membrane potential	Interproscan