Gene detail

Detailed information of XP_048587597.1 in Nematostella vectensis

Genomic Location: NC_064041.1:1305278...1314191
NR annotation: XP_048587597.1, low-density lipoprotein receptor-related protein 8 [Nematostella vectensis]

Gene Structure

More details in Jbrowse

Sequence

CDS

LOC5508402

ATGAAGAATTCTGCCTTGCTTTTGATTGGATTTGCGTGGATGATCACCCCAGCAGAGTCGCGGAGTAGGTGCTATAGCTGTACAAGTTCTGTATCATGGGATGACTGCGAACGCAAGCAAATGAGGCGCGGGTGCCCTGTGGATTCCGACGTATGCGTGACAGCCTCAGTCCGAGTGACGTCAGATAACCGTGATGTAACGGCATACTTCAAAACTTGCACTACGCGTGACAGGTGTAACGCAAGTTCTGTTGCAGCATGTAACGTGGAAGGGACTGACAAGTCGGTTGAATGCAGTATCCATTGTTGCTATGGGCTCTACTGCAATTTCAAATATGAGGAGGTCACAACTGAAAATTCGCAATCCTTCAAAAGAGCCGAATTAGCGTTCCCCTGTCGTCCACCATGTCTAATCTACAGCACCGACACTGACATCCGGGGTCTTGAGCTGCTCACACCATCCGGGATCACGGCGCGTCACGCAATAGGCCTGTCACGCCGTGGCCCCGTTGTGGGGTTTCAAGGTCAGAAGAAAATCCGCGCGCTCGACGTGCACGTGGAGAAAATGCTGGTTTTCTGGAGTGACGTCGGAGACAAGGTGATCAAAAGAGGTAATCTCATTACTGGTGAGGTTGTTACGGTGGTCTCTGACGTGCAAGCCCAACACGATGGGGTCGCTGTGGACTGGGCCACAGGCCTCCTCTACTGGACAAATAGAGACAAAAAGGCGATAGAGGTCGCGAAGCTTGATGGAAGTTTTAGGAAGACTTTGATAAAAGACAACCTTGTCGGCCCGAAAGGCATTGTGGTAGACCCACGAACAGGCCTTATGTTCTGGACAGACAAGGGGACACCAAAGATTGAACGCGCCACCCTAGCCGGTCGTGACCGCATCAGCCTCGTTACCACGGCCCTGAAACGCCCAGAGGGGCTGGTCAATGACTACGCCTCCAACCGTCTGTACTGGTGCGACCCTATCCTAGATTACATCGAGTCTATTGACTATGACGGGGGAAATCGGCGAGTGCTGTACAAGAACGGGGTACACCCTTTCGATATGGCCATATATGGGCATATGCTTATCTGGAGTGACCTGGGGATTAATACCGTCGAGCGCGTGGACATGAGGACTGGGGTCAAGCTTAGTACACTGGTTACTTTAAAGGATAACTGGGCGACCGGGATCGCTGTGTTACACTTATCGAGGCAGCCAATTGTGGCCTCTCCCTGTGGCGACAACAATGGCGGCTGCAGTCATTTATGCTTACCGAATGGTGACGCCAAATACATCTGCGCATGTCCAGATGGGGACTCGATATCTGCTGACCAGAAAAACTGCAACTCAGTTGCTCCATCCGTGAATCCAAGAAAAACTACAATCGCGACCACTACGAGCTCACCAACACAAACAACAACAAAAGCTGCAGCATCTACTAAAACTCAGTCCCAAACTCCTACAACTGCCAAGACTCAGGCTCCATCTACCACGATGTCCACCGAGTCTCCCTCCACCACAATGTCTGCCGAGTCTCCCTCCACCACAATGTCGACCGAGTCTCCCTCCACCACAATGTCCACCGAGTCTCCCTCCACCACAATGTCTACCGAGTCTCCCTCCACCACAATGTCGACCGAGTCTCCCTCCACCACAATGTCTACCGAGTCTCCCTCCACCACAATGTCGACCGAGTCTCCCTCCACCACAATGTCGACCGAGTCTTCCTCCACTAAAATATCGACCGGGTCTCCCTCCACCAGAATGTCGACCGAGTCTCCCTTCACTACAATGTCGACCGGGTCTCCTTCCACCAGAATGTCGACCGAGTCTCCCACCACTACAATGTCGACCGAGTCTCCCACTACCACAATGTCGACAGAGTCTCCCTCCACCACAATATCGTCGGAGTCTCCCTCTTCAACAATGTCGACCGAGTCTCCCTCCACTACAATGTCGACCGAGTCTCCCTTCAGCAGAATGTCGACCGAGTCTCCCACCACCACAATGTCGACCGAGTCTTCCTCCACTAAAATATCGACCGGGTCTCCCTCCACCAGAATGTCGACCGAGTCTCCTTCCACTACAATGTCGACCGAGTCTCCTTCCACTACAATGTCGACCGAGTCTCCTACACCAGCCTTTCCAGGTACATTCCATTTGTGTGAGCATAGCAGTGCGACATTGTCGTGTGATCAGGGAAAACGACTGTCCATTATCTCAGCCAACTACGGTCGCACCTTTGACCAGCGGATTTGCCCACACTATGCCATGCGCACAACGCACTGCCAATCTGCGTACGCTAGGGATGTCATTCACTGCGCATGTCACAGTAGACGCTCGTGTCGTTTGTACGCGAAGAATGAAGTGTATGGAGATCCATGTCCGGGGACTTTTAAGTACATCGAAGTCAGATATTCATGTGTGTAG

Transcript

rna-XM_048731640.1

TTCACTGTCTCAACAGGAACATAAACACAAGATAATACGTAAATAGCACAGGCCAAAACGCGCTGAAATACCTAATTTTCCCTTTTCGTCCTGTAAGAAGCGGCCAAGCTCCCTCACTAGAAAGAATGAAGAATTCTGCCTTGCTTTTGATTGGATTTGCGTGGATGATCACCCCAGCAGAGTCGCGGAGTAGGTGCTATAGCTGTACAAGTTCTGTATCATGGGATGACTGCGAACGCAAGCAAATGAGGCGCGGGTGCCCTGTGGATTCCGACGTATGCGTGACAGCCTCAGTCCGAGTGACGTCAGATAACCGTGATGTAACGGCATACTTCAAAACTTGCACTACGCGTGACAGGTGTAACGCAAGTTCTGTTGCAGCATGTAACGTGGAAGGGACTGACAAGTCGGTTGAATGCAGTATCCATTGTTGCTATGGGCTCTACTGCAAtttcaaatatgAGGAGGTCACAACTGAAAATTCGCAATCCTTCAAAAGAGCCGAATTAGCGTTCCCCTGTCGTCCACCATGTCTAATCTACAGCACCGACACTGACATCCGGGGTCTTGAGCTGCTCACACCATCCGGGATCACGGCGCGTCACGCAATAGGCCTGTCACGCCGTGGCCCCGTTGTGGGGTTTCAAGGTCAGAAGAAAATCCGCGCGCTCGACGTGCACGTGGAGAAAATGCTGGTTTTCTGGAGTGACGTCGGAGACAAGGTGATCAAAAGAGGTAATCTCATTACTGGTGAGGTTGTTACGGTGGTCTCTGACGTGCAAGCCCAACACGATGGGGTCGCTGTGGACTGGGCCACAGGCCTCCTCTACTGgacaaatagagacaaaaagGCGATAGAGGTCGCGAAGCTTGATGGAAGTTTTAGGAAGACTTTGATAAAAGACAACCTTGTCGGCCCGAAAGGCATTGTGGTAGACCCACGAACAGGCCTTATGTTCTGGACAGACAAGGGGACACCAAAGATTGAACGCGCCACCCTAGCCGGTCGTGACCGCATCAGCCTCGTTACCACGGCCCTGAAACGCCCAGAGGGGCTGGTCAATGACTACGCCTCCAACCGTCTGTACTGGTGCGACCCTATCCTAGATTACATCGAGTCTATTGACTATGACGGGGGAAATCGGCGAGTGCTGTACAAGAACGGGGTACACCCTTTCGATATGGCCATATATGGGCATATGCTTATCTGGAGTGACCTGGGGATTAATACCGTCGAGCGCGTGGACATGAGGACTGGGGTCAAGCTTAGTACACTGGTTACTTTAAAGGATAACTGGGCGACCGGGATCGCTGTGTTACACTTATCGAGGCAGCCAATTGTGGCCTCTCCCTGTGGCGACAACAATGGCGGCTGCAGTCATTTATGCTTACCGAATGGTGACGCCAAATACATCTGCGCATGTCCAGATGGGGACTCGATATCTGCTGACCAGAAAAACTGCAACTCAGTTGCTCCATCCGTGAATCCAAGAAAAACTACAATCGCGACCACTACGAGCTCACcaacacaaacaacaacaaaagctgCAGCATCTACTAAAACTCAGTCCCAAACTCCTACAACTGCCAAGACTCAGGCTCCATCTACCACGATGTCCACCGAGTCTCCCTCCACCACAATGTCTGCCGAGTCTCCCTCCACCACAATGTCGACCGAGTCTCCCTCCACCACAATGTCCACCGAGTCTCCCTCCACCACAATGTCTACCGAGTCTCCCTCCACCACAATGTCGACCGAGTCTCCCTCCACCACAATGTCTACCGAGTCTCCCTCCACCACAATGTCGACCGAGTCTCCCTCCACCACAATGTCGACCGAGTCTTCCTCCACTAAAATATCGACCGGGTCTCCCTCCACCAGAATGTCGACCGAGTCTCCCTTCACTACAATGTCGACCGGGTCTCCTTCCACCAGAATGTCGACCGAGTCTCCCACCACTACAATGTCGACCGAGTCTCCCACTACCACAATGTCGACAGAGTCTCCCTCCACCACAATATCGTCGGAGTCTCCCTCTTCAACAATGTCGACCGAGTCTCCCTCCACTACAATGTCGACCGAGTCTCCCTTCAGCAGAATGTCGACCGAGTCTCCCACCACCACAATGTCGACCGAGTCTTCCTCCACTAAAATATCGACCGGGTCTCCCTCCACCAGAATGTCGACCGAGTCTCCTTCCACTACAATGTCGACCGAGTCTCCTTCCACTACAATGTCGACCGAGTCTCCTACACCAGCCTTTCCAGGTACATTCCATTTGTGTGAGCATAGCAGTGCGACATTGTCGTGTGATCAGGGAAAACGACTGTCCATTATCTCAGCCAACTACGGTCGCACCTTTGACCAGCGGATTTGCCCACACTATGCCATGCGCACAACGCACTGCCAATCTGCGTACGCTAGGGATGTCATTCACTGCGCATGTCACAGTAGACGCTCGTGTCGTTTGTACGCGAAGAATGAAGTGTATGGAGATCCATGTCCGGGGACTTTTAAGTACATCGAAGTCAGATATTCATGTGTGTAGGGTTGCGGGACCTTCAAGGCCTTTACCAGGAGATCTGTACAATACATCACAGCCCTAAAGGCCCTTAGCTAATAAGGCATTACTTTCGATAGAAATGGATAACTACATACAACTACATGTACAAGTATATAAATTTCTTATTCTGATACAAGTGGACTGGTGCCTGAAAGACGTTTTATCTTTTACACTCTGTACTGATAGAAAGAAGATCAATAAATTATTACATCTGATAAGTCTATCAGGAAGATAAAA

Protein

Uniprot

Uniprot term	Description
Q04833	Low-density lipoprotein receptor-related protein OS=Caenorhabditis elegans OX=6239 GN=lrp-1 PE=1 SV=1
O75096	Low-density lipoprotein receptor-related protein 4 OS=Homo sapiens OX=9606 GN=LRP4 PE=1 SV=4
Q8VI56	Low-density lipoprotein receptor-related protein 4 OS=Mus musculus OX=10090 GN=Lrp4 PE=1 SV=3

Pfam domain

Pfam accession	Pfam name	Description	Type	Source
PF00058	Ldl_recept_b	Low-density lipoprotein receptor repeat class B	Repeat	Interproscan
PF00021	UPAR_LY6	u-PAR/Ly-6 domain	Domain	Interproscan
PF02140	Gal_Lectin	Galactose binding lectin domain	Domain	Interproscan
PF14670	FXa_inhibition	Coagulation Factor Xa inhibitory site	Domain	Interproscan

InterPro

InterPro term	Type	Description	Source
IPR050778	Family	Cueball/EGF/LRP/Nidogen	Interproscan
IPR000922	Domain	D-galactoside/L-rhamnose binding SUEL lectin domain	Interproscan
IPR011042	Homologous_superfamily	Six-bladed beta-propeller, TolB-like	Interproscan
IPR000033	Repeat	LDLR class B repeat	Interproscan
IPR016054	Domain	Ly-6 antigen/uPA receptor-like	Interproscan
IPR045860	Homologous_superfamily	Snake toxin-like superfamily	Interproscan
IPR043159	Homologous_superfamily	D-galactoside/L-rhamnose binding SUEL lectin domain superfamily	Interproscan

PANTHER

PANTHER term	Description	Source
PTHR46513	VITELLOGENIN RECEPTOR-LIKE PROTEIN-RELATED-RELATED	Interproscan

Gene Ontology

GO terms	Category	Description	Source
GO:0030246	Molecular Function	carbohydrate binding	Interproscan