Gene detail

Detailed information of XP_048587642.1 in Nematostella vectensis

Genomic Location: NC_064041.1:2907179...2925455
NR annotation: XP_048587642.1, uncharacterized protein LOC5502812 isoform X2 [Nematostella vectensis]

Gene Structure

More details in Jbrowse

Sequence

CDS

LOC5502812

ATGACAAGCCTTGGAAGTCCTATATTGGACTGTTTTCGCAATGGCTCCATCGTGCAGCTCAAATCAAGGTCATCAGGGGGGACTCTCACCATGAGGGAGGGAGGCATAGTCAGTGGAAATGGCCCTGTGGGATTTTACGCGGGTCGCCTGGGCCCCAGGACTCCGGTCTGGGGACGATGGACTGATGGTACTTATCATCGTGGAACCATTACCAACGTGGGCACCAAAATCGACATCACCTTTAACGATGGGGACAATGTGCAGCATGCTATAAATGACCCTACGGCCGTGGTGGCGGATGTTGGCCCTGACCCAGAGGTTTTGAAGCCAGGAGCCCGTGTTATTGCTCAATTCAGGGGGAGCACGAAGTATTACGCCGGTCGTATTGTCGAGGTAGACAGCTCTAATAGCCAGCAGCCTCGATGCCACGTCCAGTTTGACGACGGAGACAAGGAATGGGCTGAGGCGAGGTTCATTCGCATGCTACCGGAAGTGGCCGCTGCAGACCTAGGGGTCCCGTCCATTATAACGAATAGTCGTGTACTGGCGCGCTGGACTAACGACCAGTACTACCGCGGCACCGTCACCAATGTGGGAGAGAAGATTGATATCAAGTTTGACGACGGGGACAAAATCCAACACGACCCCCTTGACGTCAGTGCAGTTATCTATGACGTCACGCCTTCCCGTGGTACCTTGCAGGTTGGAGTACGAGCAGTTGGTTACTGGCCAGACAAAGGGAACTTTTATCTTGGCCGTATTGGCCAGGTAGACTACCACAACGCCTCCCACCCTCGCTTTCTGCTTAACTTTGACGATGGCGATAGCATCTGGTGCAATCTGGACGAAGTCCGACGCGTACCGCTTCGACGAGAGCAAGTTGGTTGTATGGTGTGGGGCCGCTGGTCAGATGGGCGCTACTTCCTCGGGCGCGTAACTGACGTGAGAGATGGCAAGATCCATGTGACCTTCGACGATGGCGACAACATATCACATGACCTTGGTGACGTAAGCGCGGTGATCGTGGACCTTGTACCCAACCCCACGCACGTGCCAATCGGTGCACGAGTGATCGCCGATTTCGAGGGGCGTTGCCATTACTATAAAGGGCGTGTGACGCAGATAGATTCGACCAATCCGTATGCGCCACGTTATCACGTGACTTATGACGATGGGGACAAGGGCTGGGTGAACTGCGACAAAGTGAGGCTTCTGCCCATGCGTGCGGATGAAGTTGGGGCGCGTGTTTACGCTCGGTGGACCAATGGCCAGTTCTACCTCGGCACCGTGGAACGCGTGGGCCACAAGATCGAGATCAAGTACGACGATGGAGATCGTATTGCGCATGACCCAAGTGACATCACGGCTGCTGTCATTCTCGACAGTACCCCCAACCCAGGCTCTGTTGGCCGAGGCACCCGTGTTATCGCTGCGTGGCCTGGGAAAGAGAAGTACTACCTGGGAACGGTTGACGCCGTCAACAAAGATCGGATGTATGAGCCTCAATATCATGTTAAATATGACGATGGTGACGAGAGTTGGGTGACTGTGAATCAACTGAGGGTTATCCCCGCCCCTGGACCGGCCCCTGAATCCCAGTTTATGGTCGTCCAGATTGGAGCTGATGTGGTCGCACTGAACAGTATTGCACATCCCCATTTCTACCTTGGCCTTGAGGGAGGTTATCTCCGCGGGAAGTGGTTTGATACGTACTGTCACTTCTACTTGCGAGAGGCTCCAAATCAATTCATGTCATTGGAACCCTGTATGTTGCCAGGACAACATGTCGGTGTTGATAGCAAGGGAAGCGTGATGCCCCCTGCGTCAGTGTATGCAGGAACTGAGCCTGCAATGTTTGAGGTCAAACTACTGTTCAGCCCCTATGGTCAGACATACAAAGCAAACCACTCCCAAGGTGGATACCCTCAGCCAGGAGGTCAATTTCCCCCAGGGGGGTACCCTCAGCCAGGAGGTCAATTTCCCCCAGGGGGGTACCCTCAGCCAGGAGGTCAATTTCCCCCAGGGGGGTATCCACAGCCTGGAATTCATCCTCCCCCAGAGCATGGTGGATACCCTCCTCCAGGGGGCTACCCTGGCTATGGAAGTGCTCCACCACCATACTAG

Transcript

rna-XM_048731685.1

TAAGCATATTCGTCTACAAGTTCGACTGgtagcccgcaCACTAGTCACGCGACAAACACCAACCTCTCCACTTTAAACCTATCGACCCGTAGTTCCTCTTTCTCTTTCGTCCTTCTAGTCGTGATCTAAGCATATTCGTCTACAAGTTCGACTGTTCATTACCCATCATGACAAGCCTTGGAAGTCCTATATTGGACTGTTTTCGCAATGGCTCCATCGTGCAGCTCAAATCAAGGTCATCAGGGGGGACTCTCACCATGAGGGAGGGAGGCATAGTCAGTGGAAATGGCCCTGTGGGATTTTACGCGGGTCGCCTGGGCCCCAGGACTCCGGTCTGGGGACGATGGACTGATGGTACTTATCATCGTGGAACCATTACCAACGTGGGCACCAAAATCGACATCACCTTTAACGATGGGGACAATGTGCAGCATGCTATAAATGACCCTACGGCCGTGGTGGCGGATGTTGGCCCTGACCCAGAGGTTTTGAAGCCAGGAGCCCGTGTTATTGCTCAATTCAGGGGGAGCACGAAGTATTACGCCGGTCGTATTGTCGAGGTAGACAGCTCTAATAGCCAGCAGCCTCGATGCCACGTCCAGTTTGACGACGGAGACAAGGAATGGGCTGAGGCGAGGTTCATTCGCATGCTACCGGAAGTGGCCGCTGCAGACCTAGGGGTCCCGTCCATTATAACGAATAGTCGTGTACTGGCGCGCTGGACTAACGACCAGTACTACCGCGGCACCGTCACCAATGTGGGAGAGAAGATTGATATCAAGTTTGACGACGGGGACAAAATCCAACACGACCCCCTTGACGTCAGTGCAGTTATCTATGACGTCACGCCTTCCCGTGGTACCTTGCAGGTTGGAGTACGAGCAGTTGGTTACTGGCCAGACAAAGGGAACTTTTATCTTGGCCGTATTGGCCAGGTAGACTACCACAACGCCTCCCACCCTCGCTTTCTGCTTAACTTTGACGATGGCGATAGCATCTGGTGCAATCTGGACGAAGTCCGACGCGTACCGCTTCGACGAGAGCAAGTTGGTTGTATGGTGTGGGGCCGCTGGTCAGATGGGCGCTACTTCCTCGGGCGCGTAACTGACGTGAGAGATGGCAAGATCCATGTGACCTTCGACGATGGCGACAACATATCACATGACCTTGGTGACGTAAGCGCGGTGATCGTGGACCTTGTACCCAACCCCACGCACGTGCCAATCGGTGCACGAGTGATCGCCGATTTCGAGGGGCGTTGCCATTACTATAAAGGGCGTGTGACGCAGATAGATTCGACCAATCCGTATGCGCCACGTTATCACGTGACTTATGACGATGGGGACAAGGGCTGGGTGAACTGCGACAAAGTGAGGCTTCTGCCCATGCGTGCGGATGAAGTTGGGGCGCGTGTTTACGCTCGGTGGACCAATGGCCAGTTCTACCTCGGCACCGTGGAACGCGTGGGCCACAAGATCGAGATCAAGTACGACGATGGAGATCGTATTGCGCATGACCCAAGTGACATCACGGCTGCTGTCATTCTCGACAGTACCCCCAACCCAGGCTCTGTTGGCCGAGGCACCCGTGTTATCGCTGCGTGGCCTGGGAAAGAGAAGTACTACCTGGGAACGGTTGACGCCGTCAACAAAGATCGGATGTATGAGCCTCAATATCATGTTAAATATGACGATGGTGACGAGAGTTGGGTGACTGTGAATCAACTGAGGGTTATCCCCGCCCCTGGACCGGCCCCTGAATCCCAGTTTATGGTCGTCCAGATTGGAGCTGATGTGGTCGCACTGAACAGTATTGCACATCCCCATTTCTACCTTGGCCTTGAGGGAGGTTATCTCCGCGGGAAGTGGTTTGATACGTACTGTCACTTCTACTTGCGAGAGGCTCCAAATCAATTCATGTCATTGGAACCCTGTATGTTGCCAGGACAACATGTCGGTGTTGATAGCAAGGGAAGCGTGATGCCCCCTGCGTCAGTGTATGCAGGAACTGAGCCTGCAATGTTTGAGGTCAAACTACTGTTCAGCCCCTATGGTCAGACATACAAAGCAAACCACTCCCAAGGTGGATACCCTCAGCCAGGAGGTCAATTTCCCCCAGGGGGGTACCCTCAGCCAGGAGGTCAATTTCCCCCAGGGGGGTACCCTCAGCCAGGAGGTCAATTTCCCCCAGGGGGGTATCCACAGCCTGGAATTCATCCTCCCCCAGAGCATGGTGGATACCCTCCTCCAGGGGGCTACCCTGGCTATGGAAGTGCTCCACCACCATACTAGACATGTGAGATGCTAATGAAGGAAGGAAAAATGGAAAGATGGATATGATTTACTATAATTGAAATAATAAACAGTATTCAAAGAAACTAGAAGACTCTTCAAAATCTGATTGACCTtagaatatattttattaaaagtaaaatTTGATTGAGACAATAAATGAGAAAAATATGCAATCacaaaatgtttgtttatgtAAAGAttaaattgaataaaaattatttcaatGC

Protein

Pfam domain

Pfam accession	Pfam name	Description	Type	Source
PF18359	Tudor_5	Histone methyltransferase Tudor domain 1	Domain	Interproscan

InterPro

InterPro term	Type	Description	Source
IPR041291	Domain	Histone methyltransferase, Tudor domain 1	Interproscan
IPR047252	Family	TP53-binding protein 1-like	Interproscan
IPR008996	Homologous_superfamily	Cytokine IL1/FGF	Interproscan
IPR002999	Domain	Tudor domain	Interproscan

PANTHER

PANTHER term	Description	Source
PTHR15321	TUMOR SUPPRESSOR P53-BINDING PROTEIN 1	Interproscan

Gene Ontology

GO terms	Category	Description	Source
GO:0000077	Biological Process	DNA damage checkpoint signaling	Interproscan
GO:0005634	Cellular Component	nucleus	Interproscan
GO:0042393	Molecular Function	histone binding	Interproscan
GO:0045944	Biological Process	positive regulation of transcription by RNA polymerase II	Interproscan

KEGG pathway

KO	Enzyme	Enzyme ID	pathway	mapID	Source
K18197	yesW; rhamnogalacturonan endolyase	EC:4.2.2.23	Enzymes with EC numbers	-	deepkoala