Gene detail

Detailed information of XP_048587693.1 in Nematostella vectensis

Genomic Location: NC_064041.1:9401301...9435098
NR annotation: XP_032220084.1, protein GPR107 isoform X2 [Nematostella vectensis]
Species Nematostella vectensis · all data for this species · gene families

Gene Structure

More details in JBrowse

Sequence

CDS

Transcript

rna-XM_048731736.1

CAGTCTTTTGTGGGTCTGACGTCACCACGTCTTatcaaaatggctgccatcCTCCGCTCAATCAACGGCATCAAGAAACTCGCAAGATTTCTCTTTTTTACACTTCTATTTTCCATTTGTACGTGTAGAAAACACGAGTTAAGACTTCAGaacGAAGAAAGAAAGTCATTTGAGCTGAGTAAGTTTGGGTTCTTAAAGGATGGTTATCTCAGAGTTGAAGTCAGCAAAATGGTCTACAAGGATCAACAGAATGTCCTCAAAAGCAGCGAGCTTTCAAGAAATtTTGGGTTCTCATTAGAGAAAACTGCAAGCGATGGAATATCACCTTATATGGAGCAGCATGCCGAGCAGTGTATACTGCATGATGTCTCAAGCTTTCAAAACCATATCTCAGTGGCAGTGTTCATTTTTGATCTCAAGAACAAAAGAATTGTTGTCAACAAATACGGGTCTGACTTTGATAACCTCCGCATTGGAACAGACATTTCATTTGGTCTAGAACTTGACATTGATAAAACATTCCAAAAAGAGGTGAAGAAAACATCAGGTTCAAGTAAATCAAGTAATGGAACACAGGGAGgaaatgaaaataagaaaaggaAGGAAAATTTGTcaaccacaacaacaaacacATCACCTACTGCTGCAACAACAACTGCTTCCTCTCCTGTTACAACTATGGAGTCTATTACCAAAGGACCTCAAGAAACAAGCACTTTGACTGCGGTTCCAAAAAATAGCATCAGACATCGCAGGTCAATTTCCACCTATGCTCCTAAGAAGGTTGTCAGCCAGAACCTTCCTCTATTGGTTGAGAAATCAAACATGACAACCGTTTATTCTGGAAATTTCACTGTTATGGTAAAAGACAAGAGTGAAGAAGGTTTATATAATTTGTACTTCCACAACTGTGCTAACTACCTGGGCAAGACACAGGTGGCAGTTGACATTCATGTCAAGATTGTGGAGAAGAACGATGAGAATTATTTATCTGCTGGAGAGgaGCCTCTACCATTTTTGTTTGGAATCATGGCTGTATTGTTCTTTATCACGGCCTGCTACTGGTTCTACATACTCAGGCGAAACAGGGAATATACCTTCAAGGTGCATTACATGATGTTTGTGCTGGTACTGCTCAAATCCTTGGATCTGGTGTTTGAGTCTATCAACTATCATTTCATTGGGAGGGAGGGCATACCTAGCAGATCTTGGGCTGTTATGTATTACATCACACATTTGTTGAAGGGAGCACTTTTGTTTACTACAATTGTTCTGATTGGCACTGGGTACTTCTTTGTCAAGCATGTACTAACAGACAGAGACAAGAAGATCTTCATGATTGTCATCCCACTACAGATATTGGCTAATTCCGCACAGATTGTCATGGACTCCACAGAAGAGGCAAAAATTCAGTATGCTACTTGGAAAGAACTGTTTATTCTTGTGGATTTGTTATGCTGTGGAGCAATCCTTTTCCCTGTTGTGTGGTCAATACGGCATCTTCAAGAGGCTTCAAAAACAGATGGCAAAGCTGCTATAAACCTGGCAAAGTTGAAGTTGTTTCGGCATTTTTATGTCATGATTGTATGCTACATTTACTTCACAAGAATTATAGTTTACTTGGTCAAGATAACTGTGCCATTCCAATACATGTGGTTCGATGAGtttttcaaaAATGTTGCTTCATATATCTTCTTTGTCCTGACTGGGTACAAGTTCCGCCCTGAGCCAGACAACCCTTATCTGCACGTGTCACAAGAGGACTCTGATAACGAGATGGAGATGGATGAAGTTGTGACAGCCCAAGGATTTATGGAAGGGATCTCAAGGAAAAATCCAACACTTAAGAACAGGGACACTTCTGGTGTTGCACACTTCTGAGCATTGCTTGAAGAGTCTTTCTATCTTAGATTCTGTTGTCAATGGTCTAGACTAAACATATTGAGCTTCCTTCAGCACTTGACTGGTCTCAATAAGTGGTACTAGGTCAGAAATTATGACATTTCCATCATTGCtgttgaaatatatattacagTAATATCCTTTACAGAAACCCAAAAATGGATTGTTTAAATATGTTTGCATACTTTTCAAGCTCCAACCAATCACCCAAGTTCGGCTTTGAATTTCGATTTTAAATGGCTTTAACTACATTTTGGAcacaaaaataaacagaaacgtgaattacagtattatagCACAGGGCGTAGTTCAGCTGGTTTACAAATGCAAACTATTAAGCAGTCGATTGACAATGCTTTGTGATGAAATGCAACGGAAAACATATTCTCATGTGCCACCTTTCcaattttattgtttgttattttttgctGTCTTCAAGGTTATTGTCTGTAATAACCCATGTACAAATACATTGTAAACTGTCCATAACTTTGATTTTTGCACTGTAAGACTTAATTCAATGTACTGTCATGTTTGAGGACTCAACGATCCTTGTTGGGACTCTAGTGGCCATAGAAAAAAAGTTCTGGGACCAAATGAAAGTTCAAACCGGCATCCTTAGCCAtggtaataggtcactagatctGTATAGGTACTTTTTCTACCTAAATGCACACGTAAGATTAACCATCTTCTTAACTACCAACAAAGTCGTCAATCAGAAGTGAACTCATCCCCTCACATTAGCAGGGTGGGGTCCCcatcatccccccccccactctgGACATGTGTCTCGACCAGTCATATGGTGTTTCCTGAAAAGACTTTGACCAATGTTTTCTGCAAATaagttttaatatattttagaTTTCCTTCAAAGTCAAACTACCAGTAACAAACGATTCCAAGTTGAGCATTACTGTGCAGGCTGTGAGCTCATGAAAGAAAATAACACAGACCAAAAATTATCTAATAGTTgaagatattttttgttttgtctttgtCTATGATAGTGTAGTTTTTTTCCAGATGCAGAAACAGTAATTCTTCAGGCAATGTCAGAGTTCAATGCTCCACTAATTTCTCAGTGAAATGTAATGTTTTGAGTAGAGAATAGATGTATATAATTACAATTTACAAAGAAAATTTTGATGAAGTAtacaaaatatgtaaaaaaaagagagaataaaattatttataaGCGTCTATCATGCTAATTCGTGGTGACCTTTTTAGGTGAGGTGTAATCTTTACTTTGTCCCCCCATGATGAAAAGATCACCACAGATTGGTTTATTTCAGTTGATCATGACTTGTCAACATCATTGTGGTAGTAGCTTGTGTAAAATCCATTTATGTGATTAAATATTGTTCAtcagta

Protein

UniProt (Swiss-Prot top hit)

UniProt accession	Description
D3ZWZ9	Protein GPR107 OS=Rattus norvegicus OX=10116 GN=Gpr107 PE=1 SV=1
Q8BUV8	Protein GPR107 OS=Mus musculus OX=10090 GN=Gpr107 PE=1 SV=2
Q5VW38	Protein GPR107 OS=Homo sapiens OX=9606 GN=GPR107 PE=1 SV=1

Gene family

Family type	Membership / link
Orthogroup (gene family)	OG0004860 (this species only)

Pfam domain

Pfam accession	Pfam name	Description	Type	Source
PF06814 all species →	Lung_7-TM_R	Lung seven transmembrane receptor	Family	Interproscan

InterPro

InterPro term	Type	Description	Source
IPR009637 all species →	Family	Transmembrane protein GPR107/GPR108-like	Interproscan

PANTHER

PANTHER term	Description	Source
PTHR21229 all species →	LUNG SEVEN TRANSMEMBRANE RECEPTOR	Interproscan

Gene Ontology

GO term	Category	Description	Source
GO:0005794 all species →	Cellular Component	Golgi apparatus	Interproscan
GO:0006810 all species →	Biological Process	transport	Interproscan
GO:0016020 all species →	Cellular Component	membrane	Interproscan

Search by domain instead of by gene. Any accession above (InterPro, Pfam, PANTHER, GO, KEGG) can be used as a query on the Functional Domain Search page, which searches all 148 annotated genomes at once.

KEGG pathway

KO	Enzyme	Enzyme ID	Pathway	Map ID	Source
K22985	GPR107; G protein-coupled receptor 107	-	G protein-coupled receptors	ko04030	deepkoala

Searching by KO or pathway ID across all species is available on the KEGG Pathway page.

Expression pattern (RNA-seq)

Transcript abundance of XP_048587693.1 across 48 RNA-seq samples of Nematostella vectensis. Values are TPM (transcripts per million) from the StringTie quantification; one bar is one sample, grouped and coloured by condition, sorted by expression within each group.

48Samples

44TPM > 0

16Conditions

26.2Max TPM

13.8Mean TPM

By condition

Condition	Samples	TPM > 0	Mean TPM	Max TPM
whole 6 week old aboral regenerate · regenerate 96hpa	3	3	14.65	17.03
whole 6 week old aboral regenerate · regenerate 144hpa	3	3	10.94	14.27
whole 6 week old aboral regenerate · regenerate 0hpa	3	3	12.34	15.13
whole 6 week old aboral regenerate · regenerate 2hpa	3	3	23.70	26.23
whole 6 week old aboral regenerate · regenerate uncut	3	3	12.36	15.25
whole 6 week old aboral regenerate · regenerate 4hpa	3	2	12.08	19.10
whole 6 week old aboral regenerate · regenerate 120hpa	3	3	16.63	21.60
whole 6 week old aboral regenerate · regenerate 36hpa	3	3	13.40	16.94
whole 6 week old aboral regenerate · regenerate 24hpa	3	2	10.52	17.95
whole 6 week old aboral regenerate · regenerate 20hpa	3	3	17.64	18.73
whole 6 week old aboral regenerate · regenerate 16hpa	3	3	15.87	19.69
whole 6 week old aboral regenerate · regenerate 72hpa	3	3	15.52	17.84
whole 6 week old aboral regenerate · regenerate 60hpa	3	3	13.73	15.64
whole 6 week old aboral regenerate · regenerate 48hpa	3	3	13.62	17.24
whole 6 week old aboral regenerate · regenerate 8hpa	3	2	9.38	16.36
whole 6 week old aboral regenerate · regenerate 12hpa	3	2	8.89	16.79

Per sample · hover a bar for the full sample record · show / hide the sample table

SRA run	Condition	Tissue	Developmental stage	Treatment	Study	TPM
SRR6320836	whole 6 week old aboral regenerate · regenerate 96hpa	whole 6 week old aboral regenerate	six weeks	regenerate 96hpa	SRP125570	17.03
SRR6320863	whole 6 week old aboral regenerate · regenerate 96hpa	whole 6 week old aboral regenerate	six weeks	regenerate 96hpa	SRP125570	16.04
SRR6320837	whole 6 week old aboral regenerate · regenerate 96hpa	whole 6 week old aboral regenerate	six weeks	regenerate 96hpa	SRP125570	10.89
SRR6320847	whole 6 week old aboral regenerate · regenerate 144hpa	whole 6 week old aboral regenerate	six weeks	regenerate 144hpa	SRP125570	14.27
SRR6320841	whole 6 week old aboral regenerate · regenerate 144hpa	whole 6 week old aboral regenerate	six weeks	regenerate 144hpa	SRP125570	9.77
SRR6320838	whole 6 week old aboral regenerate · regenerate 144hpa	whole 6 week old aboral regenerate	six weeks	regenerate 144hpa	SRP125570	8.79
SRR6320846	whole 6 week old aboral regenerate · regenerate 0hpa	whole 6 week old aboral regenerate	six weeks	regenerate 0hpa	SRP125570	15.13
SRR6320840	whole 6 week old aboral regenerate · regenerate 0hpa	whole 6 week old aboral regenerate	six weeks	regenerate 0hpa	SRP125570	13.17
SRR6320839	whole 6 week old aboral regenerate · regenerate 0hpa	whole 6 week old aboral regenerate	six weeks	regenerate 0hpa	SRP125570	8.70
SRR6320861	whole 6 week old aboral regenerate · regenerate 2hpa	whole 6 week old aboral regenerate	six weeks	regenerate 2hpa	SRP125570	26.23
SRR6320842	whole 6 week old aboral regenerate · regenerate 2hpa	whole 6 week old aboral regenerate	six weeks	regenerate 2hpa	SRP125570	25.32
SRR6320848	whole 6 week old aboral regenerate · regenerate 2hpa	whole 6 week old aboral regenerate	six weeks	regenerate 2hpa	SRP125570	19.54
SRR6320843	whole 6 week old aboral regenerate · regenerate uncut	whole 6 week old aboral regenerate	six weeks	regenerate uncut	SRP125570	15.25
SRR6320844	whole 6 week old aboral regenerate · regenerate uncut	whole 6 week old aboral regenerate	six weeks	regenerate uncut	SRP125570	12.49
SRR6320845	whole 6 week old aboral regenerate · regenerate uncut	whole 6 week old aboral regenerate	six weeks	regenerate uncut	SRP125570	9.34
SRR6320849	whole 6 week old aboral regenerate · regenerate 4hpa	whole 6 week old aboral regenerate	six weeks	regenerate 4hpa	SRP125570	19.10
SRR6320872	whole 6 week old aboral regenerate · regenerate 4hpa	whole 6 week old aboral regenerate	six weeks	regenerate 4hpa	SRP125570	17.14
SRR6320873	whole 6 week old aboral regenerate · regenerate 4hpa	whole 6 week old aboral regenerate	six weeks	regenerate 4hpa	SRP125570	0.00
SRR6320850	whole 6 week old aboral regenerate · regenerate 120hpa	whole 6 week old aboral regenerate	six weeks	regenerate 120hpa	SRP125570	21.60
SRR6320882	whole 6 week old aboral regenerate · regenerate 120hpa	whole 6 week old aboral regenerate	six weeks	regenerate 120hpa	SRP125570	15.20
SRR6320883	whole 6 week old aboral regenerate · regenerate 120hpa	whole 6 week old aboral regenerate	six weeks	regenerate 120hpa	SRP125570	13.10
SRR6320851	whole 6 week old aboral regenerate · regenerate 36hpa	whole 6 week old aboral regenerate	six weeks	regenerate 36hpa	SRP125570	16.94
SRR6320852	whole 6 week old aboral regenerate · regenerate 36hpa	whole 6 week old aboral regenerate	six weeks	regenerate 36hpa	SRP125570	12.34
SRR6320855	whole 6 week old aboral regenerate · regenerate 36hpa	whole 6 week old aboral regenerate	six weeks	regenerate 36hpa	SRP125570	10.93
SRR6320854	whole 6 week old aboral regenerate · regenerate 24hpa	whole 6 week old aboral regenerate	six weeks	regenerate 24hpa	SRP125570	17.95
SRR6320853	whole 6 week old aboral regenerate · regenerate 24hpa	whole 6 week old aboral regenerate	six weeks	regenerate 24hpa	SRP125570	13.60
SRR6320856	whole 6 week old aboral regenerate · regenerate 24hpa	whole 6 week old aboral regenerate	six weeks	regenerate 24hpa	SRP125570	0.00
SRR6320859	whole 6 week old aboral regenerate · regenerate 20hpa	whole 6 week old aboral regenerate	six weeks	regenerate 20hpa	SRP125570	18.73
SRR6320857	whole 6 week old aboral regenerate · regenerate 20hpa	whole 6 week old aboral regenerate	six weeks	regenerate 20hpa	SRP125570	17.23
SRR6320860	whole 6 week old aboral regenerate · regenerate 20hpa	whole 6 week old aboral regenerate	six weeks	regenerate 20hpa	SRP125570	16.98
SRR6320880	whole 6 week old aboral regenerate · regenerate 16hpa	whole 6 week old aboral regenerate	six weeks	regenerate 16hpa	SRP125570	19.69
SRR6320858	whole 6 week old aboral regenerate · regenerate 16hpa	whole 6 week old aboral regenerate	six weeks	regenerate 16hpa	SRP125570	15.17
SRR6320881	whole 6 week old aboral regenerate · regenerate 16hpa	whole 6 week old aboral regenerate	six weeks	regenerate 16hpa	SRP125570	12.74
SRR6320862	whole 6 week old aboral regenerate · regenerate 72hpa	whole 6 week old aboral regenerate	six weeks	regenerate 72hpa	SRP125570	17.84
SRR6320865	whole 6 week old aboral regenerate · regenerate 72hpa	whole 6 week old aboral regenerate	six weeks	regenerate 72hpa	SRP125570	15.13
SRR6320864	whole 6 week old aboral regenerate · regenerate 72hpa	whole 6 week old aboral regenerate	six weeks	regenerate 72hpa	SRP125570	13.58
SRR6320867	whole 6 week old aboral regenerate · regenerate 60hpa	whole 6 week old aboral regenerate	six weeks	regenerate 60hpa	SRP125570	15.64
SRR6320866	whole 6 week old aboral regenerate · regenerate 60hpa	whole 6 week old aboral regenerate	six weeks	regenerate 60hpa	SRP125570	13.87
SRR6320869	whole 6 week old aboral regenerate · regenerate 60hpa	whole 6 week old aboral regenerate	six weeks	regenerate 60hpa	SRP125570	11.67
SRR6320870	whole 6 week old aboral regenerate · regenerate 48hpa	whole 6 week old aboral regenerate	six weeks	regenerate 48hpa	SRP125570	17.24
SRR6320868	whole 6 week old aboral regenerate · regenerate 48hpa	whole 6 week old aboral regenerate	six weeks	regenerate 48hpa	SRP125570	13.15
SRR6320871	whole 6 week old aboral regenerate · regenerate 48hpa	whole 6 week old aboral regenerate	six weeks	regenerate 48hpa	SRP125570	10.48
SRR6320874	whole 6 week old aboral regenerate · regenerate 8hpa	whole 6 week old aboral regenerate	six weeks	regenerate 8hpa	SRP125570	16.36
SRR6320875	whole 6 week old aboral regenerate · regenerate 8hpa	whole 6 week old aboral regenerate	six weeks	regenerate 8hpa	SRP125570	11.78
SRR6320876	whole 6 week old aboral regenerate · regenerate 8hpa	whole 6 week old aboral regenerate	six weeks	regenerate 8hpa	SRP125570	0.00
SRR6320877	whole 6 week old aboral regenerate · regenerate 12hpa	whole 6 week old aboral regenerate	six weeks	regenerate 12hpa	SRP125570	16.79
SRR6320879	whole 6 week old aboral regenerate · regenerate 12hpa	whole 6 week old aboral regenerate	six weeks	regenerate 12hpa	SRP125570	9.89
SRR6320878	whole 6 week old aboral regenerate · regenerate 12hpa	whole 6 week old aboral regenerate	six weeks	regenerate 12hpa	SRP125570	0.00

Source: CnidoSite RNA-seq expression matrices (NVECT_TPM, StringTie quantification over 48 runs), joined to SRA sample metadata. Samples whose tissue/treatment is not recorded in the source metadata are grouped by the descriptor carried in the expression matrix itself.