Gene detail

Detailed information of XP_048587740.1 in Nematostella vectensis

Genomic Location: NC_064041.1:13270840...13286566
NR annotation: XP_048587740.1, antiviral innate immune response receptor RIG-I isoform X1 [Nematostella vectensis]
Species Nematostella vectensis · all data for this species · gene families

Gene Structure

More details in JBrowse

Sequence

CDS

LOC5516250

ATGCAACCCAAGCAGCGGGAGCTGATCACTAAGCGACTGCAGTATTTCCAACATGACTTCCGGCCAACCGAACTACTACCCCGCCTCACCTGTTTGACCGAGGCGGACTCGCAGCAAGTTGAATGCGATGAAAATAACAAAGGAGCTACCAGAGCCACATGGACTCTTATTGACAAGCTCAAGCGACGGGAGAATGGGTTCGAGCAGTTTGTATTGGCCGTGAGATGTGAGGGATTGGGGCATATAGCGCTATTACTTGATCATAGCTTTGAAGTGAGCGATGAGGATATACTGCATGAGAAAGAAGACACCAGGAGATTCTACAAAATCGGATCCGCTGTTGATATTCGTATCACCGGGCGCATTACGAAGAAAGATCTTCCTGATCGTCAGCTGGACATCGAAAAACTGGTGGCGGAGAAATTCGCCAAATTGCGTTCCGAGGATACAAAGGAAATACGCAAAGAATTCAACAAAGTGCTCCCGCGCGGAATCGAATTCGTTCAGACAAAACAGATGGGCGGACCGTTGTCGCCACGAGGAAGCAGACACGAGGAAGCAAAACCGGAAATCGAACTTGAACCGGAAACTGAAGAATTATCTCAAAAGTTGAATGATGTGGTACTTGCTTCAGAGCATGCAGGATCAGAGAGTGAAAGTGAAAAGCCGTCCGCTGACCAATACATGAAGGACTCAGTGGTCGCCGTGTTTCGGTTCGCGACCATCGCTGCCGTAGACGAGTTTAAAGGAATTTGGGAAAACGGAAAGTTCCAAGAAATCTGCCAGGAACTGCTTGTTACCAGGCCCCTGTCAAATATGGGCGAGAAAAAAGACCGTCTGCCACTTGAACTAATGATGAATTTCTTAGAGGAAGATATGGAGCGTATCAAAAACATTCTCGAAGATGTTGAAGCCGAGCAAGAAGTCGAGAGGACTGGGGATGACCTGCTTCGGTCAGCCAGAGGCAGTGATGGTCACGAGACCGACTTTCTGGATGAACAGGACATCTCTATAAATATCCCGCCAGTCTACCTTGAATCTAACCACGGCTCGGCCCTGGCTCATGACCTCAAGCTCCGCAAGTACCAAGAGGAGCTCGCTGAGCCTGCGATCCAGGGGTACAACACCGTCATCTGTGCGCCGACCAATAGCGGCAAGACATTCGTTGCTATGGAGATCGCTAAGCAACATCTTGACAAGCACTCCGATCATGCAAAAGAGGAAATATGGGAGGATTTTGCTTCCAACAAGGACAGCGTAGATAAACTCAATAAGCGTCAAAAACTCACTAAGATTGTGGAGAATTCACAAACTGGCTGGAGGGCGGTCGGTGGATTTGATTCTGATGAACAATCATCAGACTCCGAGGATGAAAAATCTATACGCAAAGAAACGGGTGTAACAGACTGTCGAAAACGTCGCCTTACTAAAGATAGCGGGGATAAGCCTAAATCTAAGGAATGCTCTGTTCAAAGGGGCTTTAATGGCGCTGTTGAGATACCGGATCAGATAACTGGGCCTAAAGTAATCTTCATCGTCAGCACACAAAATCTTGTGCTACAACAGCGGCAGCGCTTTGAGGCATATCTCAGCAATTATGCTGTATGCGACATTTCCGGAGTGAACTCTACAGAAATCCCCCTGAAATTCCTTCTTAAGGCTAACGACGTTGTGGTACTCACAGCGCAAATTCTGCTGAACGCGCTTCAAAACAAGAATGAGCTGTCCTCTATATCTTTATCTGACCTATCCCTGCTGATATTTGACGAGTGTCATCACACCAATAAAAATCACTCGTACAACAAGATTATGCACCAATATATCGACCTGAAGCTGAAAAAACACAAGGGCCTCCCACAGGTGGTAGGCCTCACCGCCTCTCTTGGCGTCGGTAAATCCAACACTGTTGAGAACGCACATAAGCACATCCTGCAGATCTGCGCGAACATGGATGCGCAAAAAATCAACACGGTGCGTGAAAATGTCAACGAGCTTAAAGATTGCGTGACAGGAGGAGTTCCAGAAAGGAAAGTCATTCGCGTCAATACAAGCCAGTCACTGAGTCCGTTTACTCGAGCGTGCAACCAGGTGATGGATAAGATCGAAAAAGCGGCAAAGAAGTCTCTCCCAGACCTCCAGCAGCCACCCTGCAACCGGGTGAGCCAGCAATACCGCCAGTGGATTGAGGTCATCAGCAAGCAGGCATGCGCCTTAGGGCTTCGTCAACTTACTACGTACATCGAGCAACTGCGGCAGTACCACCTGGCCCTCCTCACCAATGACACGGTACGGATGAAGGACGCCCTCACCTGCCTCAAGGAGTACTTCGACACTCTGGACGAGACCAAGTTCACAGAGAACGATAAACTACTGCACAATCTGTACCACAAGGCCAAAGAACTGGTGGAGAATCACGTCGCGATACATGGCGAAACCCCGAACCCTAAACTCGAGGAGCTGAAGAAACTGCTCTTGGGATTCCACGAGAACGACTCAAGAGAGTCCAAGGGGATTCTATTCACTGTGACACGTGGCTCTACTGTTGGGCTCGTCGAGTGGATCAAAGAGTCGGAAGACCTCAAGCATAAGTTCAGGCCAAAGGCGCTCGTCGGTGGGGGAGACGGTGTTGTGGGAATGTCTCAACAAGAGCAGGAACTCATCATCGAGGAATTCAAGAAAGGCGTTGTAAACATTCTCATTGCGACATCTGTGGCCGAGGAGGGCTTGGACATAAAAGATTGCAGTTTTGTCATCCGTTACGATACGTATGGCAATGAGATATCTAGTACCCAGGCGCGTGGCCGGATTAGGGCAGATCAGGGCCAGTATGTTTATCTGGCTGACGCTCGGTCTAAAGGCCACGAGCGAGAGAAGCTGAACCAGTACCGAGAGATACTGATGACGGATGCGGTCGCGGCCGTGCAAAAGCTGACTCAGGACGAGTACATGAAGGAGATCGATCAGCTTCAGCAGAAGGACGCGCGTATTCGTCAAATAAAATCCCAGCTTGAAGCGCGCAAGAGAGATGTCAATCAGCATACAGCTACCGCTAGATTCTACTGCCGGAAGTGTAACACCTTTGCGTGTGAGGCACGTGATTTCCGGTGTGTCTCAGGCTCCCATTATGTCGTGATCAGCCCCGAGTTCAAGCGCGACAAGATTGAACTGAAACCACACAAGAAGCCCAAGCTGATAGACGGCATAACCATGGATACAAAGGTCCATTGCAAGAAATGCGGCGAAGACTGGGGCGTGACCGCAAAGATTCATGGAGCTGAGTGGCCGCTCCTTAAGATCAATAGCTTTGTGGTCCAAATTGAGGGCGGCCCTCGAAAACTCTACCGGAAGTGGACAGAGGCTGCCCTGAACATAAAGCAAGTTGATGATTATTTGGAGGTGCTCGCTGAAGAAGAGGCGGGGCTTAATGACAGTTTGATGGATGATCTGAGCTTGGATGACGACTTGTAG

Transcript

rna-XM_048731783.1

CCCCTACATCACTAAGTGACGTCATCCTCCCTAGTATAAATACGTTGAAGCGAGAAGAAGAGTTCAGAGCTTCGCAGCGCATCCCTTGAACTTCGTAGCCGAAAGGAaggtaaagagagagaagAAAAACATTCTTAACTAGAAACTGCGTGACGAGTTACGTGACACAAGATGCAACCCAAGCAGCGGGAGCTGATCACTAAGCGACTGCAGTATTTCCAACATGACTTCCGGCCAACCGAACTACTACCCCGCCTCACCTGTTTGACCGAGGCGGACTCGCAGCAAGTTGAATGCGAtgaaaataacaaaggagCTACCAGAGCCACATGGACTCTTATTGACAAGCTCAAGCGACGGGAGAATGGGTTCGAGCAGTTTGTATTGGCCGTGAGATGTGAGGGATTGGGGCATATAGCGCTATTACTTGATCATAGCTTTGAAGTGAGCGATGAGGATATACTGCATGAGAAAGAAGACACCAGGAGATTCTACAAAATCGGATCCGCTGTTGATATTCGTATCACCGGGCGCATTACGAAGAAAGATCTTCCTGATCGTCAGCTGGACATCGAAAAACTGGTGGCGGAGAAATTCGCCAAATTGCGTTCCGAGGATACAAAGGAAATACGCAAAGAATTCAACAAAGTGCTCCCGCGCGGAATCGAATTCGTTCAGACAAAACAGATGGGCGGACCGTTGTCGCCACGAGGAAGCAGACACGAGGAAGCAAAACCGGAAATCGAACTTGAACCGGAAACTGAAGAATTATCTCAAAAGTTGAATGATGTGGTACTTGCTTCAGAGCATGCAGGATCAGAGAGTGAAAGTGAAAAGCCGTCCGCTGACCAATACATGAAGGACTCAGTGGTCGCCGTGTTTCGGTTCGCGACCATCGCTGCCGTAGACGAGTTTAAAGGAATTTGGGAAAACGGAAAGTTCCAAGAAATCTGCCAGGAACTGCTTGTTACCAGGCCCCTGTCAAATATGGGCGAGAAAAAAGACCGTCTGCCACTTGAACTAATGATGAATTTCTTAGAGGAAGATATGGAGCGTATCAAAAACATTCTCGAAGATGTTGAAGCCGAGCAAGAAGTCGAGAGGACTGGGGATGACCTGCTTCGGTCAGCCAGAGGCAGTGATGGTCACGAGACCGACTTTCTGGATGAACAGGACATCTCTATAAATATCCCGCCAGTCTACCTTGAATCTAACCACGGCTCGGCCCTGGCTCATGACCTCAAGCTCCGCAAGTACCAAGAGGAGCTCGCTGAGCCTGCGATCCAGGGGTACAACACCGTCATCTGTGCGCCGACCAATAGCGGCAAGACATTCGTTGCTATGGAGATCGCTAAGCAACATCTTGACAAGCACTCCGATCATGCAAAAGAGGAAATATGGGAGGATTTTGCTTCCAACAAGGACAGCGTAGATAAACTCAATAAGCGTCAAAAACTCACTAAGATTGTGGAGAATTCACAAACTGGCTGGAGGGCGGTCGGTGGATTTGATTCTGATGAACAATCATCAGACTCCGAGGATGAAAAATCTATACGCAAAGAAACGGGTGTAACAGACTGTCGAAAACGTCGCCTTACTAAAGATAGCGGGGATAAGCCTAAATCTAAGGAATGCTCTGTTCAAAGGGGCTTTAATGGCGCTGTTGAGATACCGGATCAGATAACTGGGCCTAAAGTAATCTTCATCGTCAGCACACAAAATCTTGTGCTACAACAGCGGCAGCGCTTTGAGGCATATCTCAGCAATTATGCTGTATGCGACATTTCCGGAGTGAACTCTACAGAAATCCCCCTGAAATTCCTTCTTAAGGCTAACGACGTTGTGGTACTCACAGCGCAAATTCTGCTGAACGCGCTTCAAAACAAGAATGAGCTGTCCTCTATATCTTTATCTGACCTATCCCTGCTGATATTTGACGAGTGTCATCACACCAATAAAAATCACTCGTACAACAAGATTATGCACCAATATATCGACCTGAAGCTGAAAAAACACAAGGGCCTCCCACAGGTGGTAGGCCTCACCGCCTCTCTTGGCGTCGGTAAATCCAACACTGTTGAGAACGCACATAAGCACATCCTGCAGATCTGCGCGAACATGGATGCGCAAAAAATCAACACGGTGCGTGAAAATGTCAACGAGCTTAAAGATTGCGTGACAGGAGGAGTTCCAGAAAGGAAAGTCATTCGCGTCAATACAAGCCAGTCACTGAGTCCGTTTACTCGAGCGTGCAACCAGGTGATGGATAAGATCGAAAAAGCGGCAAAGAAGTCTCTCCCAGACCTCCAGCAGCCACCCTGCAACCGGGTGAGCCAGCAATACCGCCAGTGGATTGAGGTCATCAGCAAGCAGGCATGCGCCTTAGGGCTTCGTCAACTTACTACGTACATCGAGCAACTGCGGCAGTACCACCTGGCCCTCCTCACCAATGACACGGTACGGATGAAGGACGCCCTCACCTGCCTCAAGGAGTACTTCGACACTCTGGACGAGACCAAGTTCACAGAGAACGATAAACTACTGCACAATCTGTACCACAAGGCCAAAGAACTGGTGGAGAATCACGTCGCGATACATGGCGAAACCCCGAACCCTAAACTCGAGGAGCTGAAGAAACTGCTCTTGGGATTCCACGAGAACGACTCAAGAGAGTCCAAGGGGATTCTATTCACTGTGACACGTGGCTCTACTGTTGGGCTCGTCGAGTGGATCAAAGAGTCGGAAGACCTCAAGCATAAGTTCAGGCCAAAGGCGCTCGTCGGTGGGGGAGACGGTGTTGTGGGAATGTCTCAACAAGAGCAGGAACTCATCATCGAGGAATTCAAGAAAGGCGTTGTAAACATTCTCATTGCGACATCTGTGGCCGAGGAGGGCTTGGACATAAAAGATTGCAGTTTTGTCATCCGTTACGATAcgtatgGCAATGAGATATCTAGTACCCAGGCGCGTGGCCGGATTAGGGCAGATCAGGGCCAGTATGTTTATCTGGCTGACGCTCGGTCTAAAGGCCACGAGCGAGAGAAGCTGAACCAGTACCGAGAGATACTGATGACGGATGCGGTCGCGGCCGTGCAAAAGCTGACTCAGGACGAGTACATGAAGGAGATCGATCAGCTTCAGCAGAAGGACGCGCGTATTCGTCAAATAAAATCCCAGCTTGAAGCGCGCAAGAGAGATGTCAATCAGCATACAGCTACCGCTAGATTCTACTGCCGGAAGTGTAACACCTTTGCGTGTGAGGCACGTGATTTCCGGTGTGTCTCAGGCTCCCATTATGTCGTGATCAGCCCCGAGTTCAAGCGCGACAAGATTGAACTGAAACCACACAAGAAGCCCAAGCTGATAGACGGCATAACCATGGATACAAAGGTCCATTGCAAGAAATGCGGCGAAGACTGGGGCGTGACCGCAAAGATTCATGGAGCTGAGTGGCCGCTCCTTAAGATCAATAGCTTTGTGGTCCAAATTGAGGGCGGCCCTCGAAAACTCTACCGGAAGTGGACAGAGGCTGCCCTGAACATAAAGCAAGTTGATGATTATTTGGAGGTGCTCGCTGAAGAAGAGGCGGGGCTTAATGACAGTTTGATGGATGATCTGAGCTTGGATGACGACTTGTAGGCTGCGTGACGGCATATTTAGGTCGCGTCACTTGGGTGGCGTTTAGAATGCATGACGTCACTTGGGTGGCGTTTAGAATGCATGACGTCACTTGGGTGACGTTTAGAATGCATGACGTCACTTGGGTGGCGTTTAGAATGCATGAGGTCACTTGAGTGGCGTTTAGAATGCATGACGTCTTTTATTttcgttatttttatttagaaaCCTTCATCACACAatgaaacaaaagaaaagtGTGAAGAGGGGAAGGCAAGCTCCAGGCGAGATTCAGACGATGCAGACCGCGTTTAAGATAAATTAGTCTTTATGAGTGTTAATTGGAGACTACCCTCCAGCTCAGAGCTTTCTCTGCTCCAAAGAAAACGAGCGACTCAAAAAGCTTCCCAGGAGGGTAATTGGAGACTTGAATTGTTAAAACTAGTGCAGATTAAATAGCAACACTTACAAACTTACTCAATAGAAAGCATAACGGATTCCTTTTGCTGAGCTATGTGGTGCGGTAGCCCCTGCGGTATAAGAAGTGTTCTTATGGGTATATAAATAACGTTTTTAACGTCAAATTTGGCAACGGAGCGAGGGGGTCGAGGGgtgaataataaaacaaactgTCTGCATTTCGCCTGCCTCTCCTCTCCCCTCCCGCTTTAGAAAATCCTGGCCAAGCGTCATTGGTCAGAAACAAACGACTTCTTGATAATGGTaggactagaaaaactacagacaagctgtagagaAACTAGGTGATCTGAGAGGGCTTGGTAGAATTAGAGGAATGAATCAATGCAGTTCATTGCTCCGACGATGCGTTAATGCTAGAAACGTCAGGGCCCGTCGGTGTGACTATTTGTGTTCACAGAGGCGCTTCTACATTGTGGTTGATTTGTTTCCTTACTCCTTGAGAAGTCTATTTTCTACAGAGTCATCAAGGTTATCTCTTGACTTTAAAGCGGACGTTCATATAGCTAACATGCTTTTCAATCTAAAAATTAGCATGAAAAAGCCCTGAAAAACATAAACGCTTCTTACAAGAATGCAGGTAACTAATTTGATCGTCAAGAATAAAATGCTATTTTTTGTA

Protein

UniProt (Swiss-Prot top hit)

UniProt accession	Description
Q9BYX4	Interferon-induced helicase C domain-containing protein 1 OS=Homo sapiens OX=9606 GN=IFIH1 PE=1 SV=3
Q8R5F7	Interferon-induced helicase C domain-containing protein 1 OS=Mus musculus OX=10090 GN=Ifih1 PE=1 SV=1
Q6Q899	Antiviral innate immune response receptor RIG-I OS=Mus musculus OX=10090 GN=Rigi PE=1 SV=2

Gene family

Family type	Membership / link
Orthogroup (gene family)	OG0001752 (this species only)

Pfam domain

Pfam accession	Pfam name	Description	Type	Source
PF00270 all species →	DEAD	DEAD/DEAH box helicase	Domain	Interproscan
PF18119 all species →	RIG-I_C	RIG-I receptor C-terminal domain	Domain	Interproscan
PF16739 all species →	CARD_2	Caspase recruitment domain	Domain	Interproscan
PF11648 all species →	RIG-I_C-RD	C-terminal domain of RIG-I	Domain	Interproscan
PF00271 all species →	Helicase_C	Helicase conserved C-terminal domain	Domain	Interproscan

InterPro

InterPro term	Type	Description	Source
IPR027417 all species →	Homologous_superfamily	P-loop containing nucleoside triphosphate hydrolase	Interproscan
IPR011545 all species →	Domain	DEAD/DEAH box helicase domain	Interproscan
IPR014001 all species →	Domain	Helicase superfamily 1/2, ATP-binding domain	Interproscan
IPR051363 all species →	Family	RIG-I-like Receptor (RLR) Helicase	Interproscan
IPR038557 all species →	Homologous_superfamily	RIG-I-like receptor, C-terminal domain superfamily	Interproscan
IPR041204 all species →	Domain	RIG-I-like receptor, C-terminal	Interproscan
IPR001650 all species →	Domain	Helicase, C-terminal domain-like	Interproscan
IPR031964 all species →	Domain	Caspase recruitment domain	Interproscan
IPR011029 all species →	Homologous_superfamily	Death-like domain superfamily	Interproscan
IPR021673 all species →	Domain	RIG-I-like receptor, C-terminal regulatory domain	Interproscan

PANTHER

PANTHER term	Description	Source
PTHR14074 all species →	HELICASE WITH DEATH DOMAIN-RELATED	Interproscan

Gene Ontology

GO term	Category	Description	Source
GO:0003676 all species →	Molecular Function	nucleic acid binding	Interproscan
GO:0005524 all species →	Molecular Function	ATP binding	Interproscan
GO:0005737 all species →	Cellular Component	cytoplasm	Interproscan

Search by domain instead of by gene. Any accession above (InterPro, Pfam, PANTHER, GO, KEGG) can be used as a query on the Functional Domain Search page, which searches all 148 annotated genomes at once.

KEGG pathway

No KEGG orthology assignment for XP_048587740.1.

Searching by KO or pathway ID across all species is available on the KEGG Pathway page.

Expression pattern (RNA-seq)

Transcript abundance of XP_048587740.1 across 48 RNA-seq samples of Nematostella vectensis. Values are TPM (transcripts per million) from the StringTie quantification; one bar is one sample, grouped and coloured by condition, sorted by expression within each group.

48Samples

43TPM > 0

16Conditions

27.6Max TPM

10.5Mean TPM

By condition

Condition	Samples	TPM > 0	Mean TPM	Max TPM
whole 6 week old aboral regenerate · regenerate 96hpa	3	3	8.16	12.65
whole 6 week old aboral regenerate · regenerate 144hpa	3	3	5.16	6.58
whole 6 week old aboral regenerate · regenerate 0hpa	3	3	15.58	21.45
whole 6 week old aboral regenerate · regenerate 2hpa	3	3	20.89	27.56
whole 6 week old aboral regenerate · regenerate uncut	3	3	12.18	16.83
whole 6 week old aboral regenerate · regenerate 4hpa	3	2	12.68	20.51
whole 6 week old aboral regenerate · regenerate 120hpa	3	2	5.21	8.49
whole 6 week old aboral regenerate · regenerate 36hpa	3	3	11.84	14.57
whole 6 week old aboral regenerate · regenerate 24hpa	3	2	7.67	13.56
whole 6 week old aboral regenerate · regenerate 20hpa	3	3	9.04	11.30
whole 6 week old aboral regenerate · regenerate 16hpa	3	3	6.09	9.41
whole 6 week old aboral regenerate · regenerate 72hpa	3	3	17.46	24.44
whole 6 week old aboral regenerate · regenerate 60hpa	3	3	10.64	14.26
whole 6 week old aboral regenerate · regenerate 48hpa	3	2	7.90	15.09
whole 6 week old aboral regenerate · regenerate 8hpa	3	3	8.03	9.72
whole 6 week old aboral regenerate · regenerate 12hpa	3	2	10.02	17.18

Per sample · hover a bar for the full sample record · show / hide the sample table

SRA run	Condition	Tissue	Developmental stage	Treatment	Study	TPM
SRR6320863	whole 6 week old aboral regenerate · regenerate 96hpa	whole 6 week old aboral regenerate	six weeks	regenerate 96hpa	SRP125570	12.65
SRR6320837	whole 6 week old aboral regenerate · regenerate 96hpa	whole 6 week old aboral regenerate	six weeks	regenerate 96hpa	SRP125570	6.13
SRR6320836	whole 6 week old aboral regenerate · regenerate 96hpa	whole 6 week old aboral regenerate	six weeks	regenerate 96hpa	SRP125570	5.71
SRR6320847	whole 6 week old aboral regenerate · regenerate 144hpa	whole 6 week old aboral regenerate	six weeks	regenerate 144hpa	SRP125570	6.58
SRR6320841	whole 6 week old aboral regenerate · regenerate 144hpa	whole 6 week old aboral regenerate	six weeks	regenerate 144hpa	SRP125570	4.56
SRR6320838	whole 6 week old aboral regenerate · regenerate 144hpa	whole 6 week old aboral regenerate	six weeks	regenerate 144hpa	SRP125570	4.34
SRR6320839	whole 6 week old aboral regenerate · regenerate 0hpa	whole 6 week old aboral regenerate	six weeks	regenerate 0hpa	SRP125570	21.45
SRR6320846	whole 6 week old aboral regenerate · regenerate 0hpa	whole 6 week old aboral regenerate	six weeks	regenerate 0hpa	SRP125570	20.15
SRR6320840	whole 6 week old aboral regenerate · regenerate 0hpa	whole 6 week old aboral regenerate	six weeks	regenerate 0hpa	SRP125570	5.14
SRR6320861	whole 6 week old aboral regenerate · regenerate 2hpa	whole 6 week old aboral regenerate	six weeks	regenerate 2hpa	SRP125570	27.56
SRR6320842	whole 6 week old aboral regenerate · regenerate 2hpa	whole 6 week old aboral regenerate	six weeks	regenerate 2hpa	SRP125570	26.74
SRR6320848	whole 6 week old aboral regenerate · regenerate 2hpa	whole 6 week old aboral regenerate	six weeks	regenerate 2hpa	SRP125570	8.37
SRR6320844	whole 6 week old aboral regenerate · regenerate uncut	whole 6 week old aboral regenerate	six weeks	regenerate uncut	SRP125570	16.83
SRR6320843	whole 6 week old aboral regenerate · regenerate uncut	whole 6 week old aboral regenerate	six weeks	regenerate uncut	SRP125570	13.90
SRR6320845	whole 6 week old aboral regenerate · regenerate uncut	whole 6 week old aboral regenerate	six weeks	regenerate uncut	SRP125570	5.81
SRR6320872	whole 6 week old aboral regenerate · regenerate 4hpa	whole 6 week old aboral regenerate	six weeks	regenerate 4hpa	SRP125570	20.51
SRR6320849	whole 6 week old aboral regenerate · regenerate 4hpa	whole 6 week old aboral regenerate	six weeks	regenerate 4hpa	SRP125570	17.54
SRR6320873	whole 6 week old aboral regenerate · regenerate 4hpa	whole 6 week old aboral regenerate	six weeks	regenerate 4hpa	SRP125570	0.00
SRR6320882	whole 6 week old aboral regenerate · regenerate 120hpa	whole 6 week old aboral regenerate	six weeks	regenerate 120hpa	SRP125570	8.49
SRR6320883	whole 6 week old aboral regenerate · regenerate 120hpa	whole 6 week old aboral regenerate	six weeks	regenerate 120hpa	SRP125570	7.14
SRR6320850	whole 6 week old aboral regenerate · regenerate 120hpa	whole 6 week old aboral regenerate	six weeks	regenerate 120hpa	SRP125570	0.00
SRR6320855	whole 6 week old aboral regenerate · regenerate 36hpa	whole 6 week old aboral regenerate	six weeks	regenerate 36hpa	SRP125570	14.57
SRR6320852	whole 6 week old aboral regenerate · regenerate 36hpa	whole 6 week old aboral regenerate	six weeks	regenerate 36hpa	SRP125570	12.68
SRR6320851	whole 6 week old aboral regenerate · regenerate 36hpa	whole 6 week old aboral regenerate	six weeks	regenerate 36hpa	SRP125570	8.27
SRR6320854	whole 6 week old aboral regenerate · regenerate 24hpa	whole 6 week old aboral regenerate	six weeks	regenerate 24hpa	SRP125570	13.56
SRR6320853	whole 6 week old aboral regenerate · regenerate 24hpa	whole 6 week old aboral regenerate	six weeks	regenerate 24hpa	SRP125570	9.44
SRR6320856	whole 6 week old aboral regenerate · regenerate 24hpa	whole 6 week old aboral regenerate	six weeks	regenerate 24hpa	SRP125570	0.00
SRR6320859	whole 6 week old aboral regenerate · regenerate 20hpa	whole 6 week old aboral regenerate	six weeks	regenerate 20hpa	SRP125570	11.30
SRR6320857	whole 6 week old aboral regenerate · regenerate 20hpa	whole 6 week old aboral regenerate	six weeks	regenerate 20hpa	SRP125570	8.40
SRR6320860	whole 6 week old aboral regenerate · regenerate 20hpa	whole 6 week old aboral regenerate	six weeks	regenerate 20hpa	SRP125570	7.43
SRR6320880	whole 6 week old aboral regenerate · regenerate 16hpa	whole 6 week old aboral regenerate	six weeks	regenerate 16hpa	SRP125570	9.41
SRR6320881	whole 6 week old aboral regenerate · regenerate 16hpa	whole 6 week old aboral regenerate	six weeks	regenerate 16hpa	SRP125570	4.44
SRR6320858	whole 6 week old aboral regenerate · regenerate 16hpa	whole 6 week old aboral regenerate	six weeks	regenerate 16hpa	SRP125570	4.42
SRR6320865	whole 6 week old aboral regenerate · regenerate 72hpa	whole 6 week old aboral regenerate	six weeks	regenerate 72hpa	SRP125570	24.44
SRR6320864	whole 6 week old aboral regenerate · regenerate 72hpa	whole 6 week old aboral regenerate	six weeks	regenerate 72hpa	SRP125570	18.40
SRR6320862	whole 6 week old aboral regenerate · regenerate 72hpa	whole 6 week old aboral regenerate	six weeks	regenerate 72hpa	SRP125570	9.54
SRR6320869	whole 6 week old aboral regenerate · regenerate 60hpa	whole 6 week old aboral regenerate	six weeks	regenerate 60hpa	SRP125570	14.26
SRR6320866	whole 6 week old aboral regenerate · regenerate 60hpa	whole 6 week old aboral regenerate	six weeks	regenerate 60hpa	SRP125570	10.73
SRR6320867	whole 6 week old aboral regenerate · regenerate 60hpa	whole 6 week old aboral regenerate	six weeks	regenerate 60hpa	SRP125570	6.93
SRR6320870	whole 6 week old aboral regenerate · regenerate 48hpa	whole 6 week old aboral regenerate	six weeks	regenerate 48hpa	SRP125570	15.09
SRR6320871	whole 6 week old aboral regenerate · regenerate 48hpa	whole 6 week old aboral regenerate	six weeks	regenerate 48hpa	SRP125570	8.60
SRR6320868	whole 6 week old aboral regenerate · regenerate 48hpa	whole 6 week old aboral regenerate	six weeks	regenerate 48hpa	SRP125570	0.00
SRR6320874	whole 6 week old aboral regenerate · regenerate 8hpa	whole 6 week old aboral regenerate	six weeks	regenerate 8hpa	SRP125570	9.72
SRR6320876	whole 6 week old aboral regenerate · regenerate 8hpa	whole 6 week old aboral regenerate	six weeks	regenerate 8hpa	SRP125570	8.77
SRR6320875	whole 6 week old aboral regenerate · regenerate 8hpa	whole 6 week old aboral regenerate	six weeks	regenerate 8hpa	SRP125570	5.60
SRR6320878	whole 6 week old aboral regenerate · regenerate 12hpa	whole 6 week old aboral regenerate	six weeks	regenerate 12hpa	SRP125570	17.18
SRR6320877	whole 6 week old aboral regenerate · regenerate 12hpa	whole 6 week old aboral regenerate	six weeks	regenerate 12hpa	SRP125570	12.88
SRR6320879	whole 6 week old aboral regenerate · regenerate 12hpa	whole 6 week old aboral regenerate	six weeks	regenerate 12hpa	SRP125570	0.00

Source: CnidoSite RNA-seq expression matrices (NVECT_TPM, StringTie quantification over 48 runs), joined to SRA sample metadata. Samples whose tissue/treatment is not recorded in the source metadata are grouped by the descriptor carried in the expression matrix itself.