Gene detail

Detailed information of XP_048587750.1 in Nematostella vectensis

Genomic Location: NC_064034.1:18427213...18450556
NR annotation: XP_048587750.1, glycogen debranching enzyme-like isoform X1 [Nematostella vectensis]
Species Nematostella vectensis · all data for this species · gene families

Gene Structure

More details in JBrowse

Sequence

CDS

LOC116619305

ATGGCGGCCCAAGTTAGAGTTTTACAGCTAAAGCCTGGCGAAAACCTGGAAAATAAGCTGTTTAGACTGCAGAAAGGATGGATCCTTCACTTTACACTAGCTGCCAGTCTGCAGCCTTATAGCATCAAGCTTCTGTGTAACCACCCCAAGCCTGGGCAGGCATTCAACAGAACGAATTACCAGGAGTTGGTGTGGACATGCTCCCAGAAAGGGAAATGTGATAATGGGGATCGGCATGCAGAGATTAAAGTTCACCAGGCAGGCTCATTCCACTTCTATATAACATTTGAAAACTGTGAGAAGGAAAAGGCATCTTCAGATCAGAAGTGCAGTGGATATTTCACTGTTGACCCCACCTTGCGCATTAATCCCAAGGAAATCCTGCCACTGGACTCTGTGTGCCTTCAAACAGTCCTGTCCAAGTGCTTGGGTCCTCTATCACAGTGGTCAGCCCGTCTTCAAATCAGTAGAGACTCTGGCTACAATGTCATCCATTTTACGCCAATCTCAGAACTGGGAAGCTCTCATTCCTCTTATTCCATTGTTGACCAGCTCAAGCTGAATTGCAGATTTGATGAACCAGGGTCCAAGAAAGGAGCCACTTTTCCTGAAGTCAAGAAAATTCTCAACAAAATGAAAACAGAATGGAAAATGTTATCAATTGTGGACATTGTCCTGAACCACACAGCAAATGAAACTGAATGGTTATGGCAACACCCTGAGTGTTCATATAATTTGTGTAACTCACCTCACTTGAGGCCAGCATTTGTTCTTGACCGGCTTTTGTGGCACTTCACTTGTGATATAGAAGATGGAAAATACTCTGATAGGGGAATTCCCCCAGAAGTGAATACAGAGCATCAGATTCATTTAATAGGAGAAATATTAAGGAATGAGCTTATTCCAAGCCTGAAGTTGTGGGAATTCTTCTGTGTGGATATTGAGAAGACCATACAAAAGTTCAAGACTACCGTCGTCAAGCCACACCAAAAGATACCACCTCACCAACTGATGCCGAAAGAACTGTGTGTCAGACCAAACCCTGCATACAGACGTAACTCAGCTTTGGTTGATCTTGACCTGGCAGTAAAGCTGTTCAATGTCCACAGGTCTGGTGCTGCAAATGAGAAGGAACACTTTCAGAAATGCTGTGACGCCTTAAAGGAGCATCTGATCGCGTTGAATAAAGATATCAGATTCAATGAGATGCAAGGCCACATTAATGCTGCCATTGGCAACATCCAAGCAACAATGAGATATGAACGCTTGGCAGGTCATGGCCCCAAATACCCTGTTGTCTCTAGACGATACCCACTTGTCTGCAGGTATTTTACCATGCCTGGTCCAGACCTTACCTTGAAAGAAGAGGAGCAGCTGATGGATTCCCAAAAAGGGCGTCACTGTATGGCGCATCAAGGCTGGATCATGGGCGGAGATCCCCTCAAGGACTTCGCCGCACCAGGGTCTGATGTCTACCTCAGGCGTGAGGTGATACCATGGGGAGACAGTGTCAAGCTTCGATATGGCCGCAAGCCTGAGGATGTCCCATTCTTGTGGAATCACATGAAGGAATATGCAAAGAGCTGTGCAAGTATGTTTGATGGTCTGCGGCTAGACAATTGCCATAGCACACCCCTACATGTTGCTGAGTACATGCTAGATGCTGCACGGGAAGAGAATCCCGAGCTGTATGTTGTCGCTGAGCTGTTCACGGGATCTGAGGCTGTTGACAATGTGTTTGTGAACAGACTGGGCATCACGTCTCTCATAAGAGAGGCCATGTCAGCCCATGATGCTCATGAGGAGGGCCGGCTCACCTATCGATATGGTGGAGAACCTGTTGGCGCCTTTATGGACCCCTTAGCTACCAAGCCATTTGTGCCAGGCATTGCGCACGCCTTGTACATGGACGTCACCCACGACAATGAGAACCCATTCTTGGTTCGTTCAGTGTATGATGCTCTTGCAAGCTCTGCACTGGTTGCCATGGCTTGCTGTGCCACTGGGAGCAGTCGAGGTTACGATGAGCTGGTGCCGCATCAGGTTCATGTTGTGGAAGAAAAGAGACTATACATGTCTGCAGAAAGTAAAAAAAACAAAGCTCCCCAGAAGGGCATGTTGTCTGCGGATGCGGGCATTATGACGACAAAAAGGGCAATCAATGAGTTGCATCGAAGATTAGGGGAAGAGGGATATTCACAGGTATACGTAGATCAAATCCATCAAGATGTGCATGCTATCACACGTCACTGCCCTGATAAGCGCAAGACTGTGGTGATGGTGGCCCACTCTGCCTTTTCCGACCCACCCGATCACCTGAAGCCTACACAAACGAATCTCCAGGTCAACATGCAAGGCATACCACCCCTCAATATTCCAGGAGAATTTGAAGAAATCCTCTTGGAGGCGATGATTGTAAAAACAGATGAGTCATCGGAATTCCAGAAAGACAATAAGTTTATCAATGGCTTACAGAGTCACAGAGTGTTGATGCAAAAAGGAGTTACTGCAGCCAAGTCTAAGACTTGCCGAGTTGTGCCTTCAGGGAGCAATAATTTCGAAGTGTTTTTCGATCACTTTGCTCCTGGGAGTGTTATCGCCTTCCAGGTCAGCATGGAACCCAAAGTGAAACAAGCTCTAGGAACGCTAAGATCCCTCTCTTGTGCCATGTACGATGTCACATCAACGGTTGATTCAGAGACCACGAGCTTGGTGAAGGAACTTGACACCATTGTCTCCAACCTGTCGTTGGCCGACCTAAACCGCGTGCTGTACCGTTGCCAGGATGAGGAGGCAGATGATGGTAACGGCGGAGGGGTGTACGTGCTTGAGGATGAAGGTGCTCTAACCTACTGTGGGCTGCAAGGTTTTTTGTCGGTGCTGACAAACGTCCGCCAGCATAACGATCTCGCGCACCCGATCTGCAGGAATCTCCGCGCTGGTTACTGGATGATGGGATACGTGGTGGACCGCCTCATGCCCTTTATCGGAACTAGACAGCTCGGTGTGTGGCTTGACAAGGTGTTCACTCTGGTGAAGTCTTGCCCACGGTACTTGATACCATGTTACTTTGACGCAGTCATCACACCCCTTTACTTGATGCTACTCAACAGGGCGTGGTCGTGCATGTCCAGCTTCGTCAAAGATGGCTCCTCATTCGTCAAGGCCTTATCGCTGGGTTCAGTCCAGTTCCTCGGTTTGACCCGGTCCGCAAGCCTCCCACCCCTCTCGCCCAATCTGTACCACGGCCCCAGCTCGGGTGCCGAGATGCCTACGCTGATGTGCATGGCGGCGGGGCTGCCTCACTTCTCCACGGGATTTATGCGCTGCTGGGGCCGTGACACGTTTATCTCGCTACGAGGACTGATGCTCACTACAGGGCGATACACAGATGCTAAGCATCACATCTTGGGTTTCGCTGGCTGCATTCGCCACGGACTCATCCCCAATCTCCTGGACGGGGGTCGGAATCCTCGGTACAACTGCAGGGACGCTGTGTGGTGGTGGCTTCAGGCCATACAGGACTACTGTACCATCGCACCTGATGGCCTCTCCATACTAAAGGAACCTGTCTCCAAGCTCTTCCGCTTTGACAACTCGGACAGGCAGGATCCGGGGTTGCAGGACAAGCCTCTGCATGACATCATGCAAGAAGCCATACAGCGCCAGTTTATTGGCGTCCAGTTCCGTGAACGAGGGGCGGGCCCAAATCTTGACTCACACATGAAGAACGAAGGTTTCAACGTGACCGTGTGTGTTAACGAGAGGACTGGGTTCGTGTATGGTGGGAACAAATGGAATGCTGGGACGTGGATGGACAAGGTCGGGGATTCTGTGCTCGCTGGAAACTACGGCGTGCCTGCCACCCCAAGGGATGGAAGTGCAGTGGAGATTGTCGGTCTGTTAAAGTCCACTGTTAAATGGCTAGCTGACCTTTGTGACAAGAAGCAGTTTCCGTACGCTGGTGTCTCCAAGCTGCAGGATGGTACTGGCCAACAAGGTTTCCCCATCTCCTGGTCATACCGGGAATGGAGTGAGAAGCTCAACTCCACCTTCGAGAGGTACTTCTGGATCCCAGAGGAGCCCAACCCAGAACTCGAGGGCGAAGAGATTAAACTTGTCCATAGGCGTGGTATCTACAAGGACAGCTACGGAGCCACGCATAGATTCGCTGACTTCCAGCTCAGACCAAACATCTGCATCGCCATGGCTGTGGCACCAGAGATGTTCAACCCGGCGCATGCGTGGAAGGCGCTTGATGTCGTTGAGGAAGTCCTTCTAGGGCCACTAGGCATGGCTACTCTAGATCATGCGGACTGGGCCTATGAGGGCGTCTACGACAATGCGGCTGACACCACGTCGTACAAGAGCTCCAAGGGGTTCTGCTACCACCAGGGCCCGGAATGGCTGTGGTGTATCGGGCCTTTCTTACGAGCCCGTCTTCATTTCGCGCACGTACTGAACGGCGAAAGCGGGCTCAACGAGACTGTCTTCAAGGTTCGCAAAGTGCTGTCCAAGCACAAAGAAGCCATGAATGCCTCCCCCTGGCGGAGCTTACCGGAGCTTACTAACGCAGGGGGGGCTCGATGCAGGGATTCGTGCGAGGCCCAGGCGTGGTCCGTGGCTTGTGTGCTGGACGTGCTGTATGACATCGAGCAGCTTCTGGCTCAGCACTGA

Transcript

rna-XM_048731793.1

GCGAGGCCTAGGTCGACAAGCAAACATGGCGGCCCAAGTTAGAGTTTTACAGCTAAAGCCTGGCGAAAACCTGGAAAATAAGCTGTTTAGACTGCAGAAAGGATGGATCCTTCACTTTACACTAGCTGCCAGTCTGCAGCCTTATAGCATCAAGCTTCTGTGTAACCACCCCAAGCCTGGGCAGGCATTCAACAGAACGAATTACCAGGAGTTGGTGTGGACATGCTCCCAGAAAGGGAAATGTGATAATGGGGATCGGCATGCAGAGATTAAAGTTCACCAGGCAGGCTCATTCCACTTCTATATAACATTTGAAAACTGTGAGAAGGAAAAGGCATCTTCAGATCAGAAGTGCAGTGGATATTTCACTGTTGACCCCACCTTGCGCATTAATCCCAAGGAAATCCTGCCACTGGACTCTGTGTGCCTTCAAACAGTCCTGTCCAAGTGCTTGGGTCCTCTATCACAGTGGTCAGCCCGTCTTCAAATCAGTAGAGACTCTGGCTACAATGTCATCCATTTTACGCCAATCTCAGAACTGGGAAGCTCTCATTCCTCTTATTCCATTGTTGACCAGCTCAAGCTGAATTGCAGATTTGATGAACCAGGGTCCAAGAAAGGAGCCACTTTTCCTGAAGTCAAGAAAATTCTCaacaaaatgaaaacagaATGGAAAATGTTATCAATTGTGGACATTGTCCTGAACCACACAGCAAATGAAACTGAATGGTTATGGCAACACCCTGAGTGTTCATATAATTTGTGTAACTCACCTCACTTGAGGCCAGCATTTGTTCTTGACCGGCTTTTGTGGCACTTCACTTGTGATATAGAAGATGGAAAATACTCTGATAGGGGAATTCCCCCAGAAGTGAATACAGAGCATCAGATTCATTTAATAGGAGAAATATTAAGGAATGAGCTTATTCCAAGCCTGAAGTTGTGGGAATTCTTCTGTGTGGATATTGAGAAGACCATACAAAAGTTCAAGACTACCGTCGTCAAGCCACACCAAAAGATACCACCTCACCAACTGATGCCGAAAGAACTGTGTGTCAGACCAAACCCTGCATACAGACGTAACTCAGCTTTGGTTGATCTTGACCTGGCAGTAAAGCTGTTCAATGTCCACAGGTCTGGTGCTGCAAATGAGAAGGAACACTTTCAGAAATGCTGTGACGCCTTAAAGGAGCATCTGATCGCGTTGAATAAAGATATCAGATTCAATGAGATGCAAGGCCACATTAATGCTGCCATTGGCAACATCCAAGCAACAATGAGATATGAACGCTTGGCAGGTCATGGCCCCAAATACCCTGTTGTCTCTAGACGATACCCACTTGTCTGCAGGTATTTTACCATGCCTGGTCCAGACCTTACCTTGAAAGAAGAGGAGCAGCTGATGGATTCCCAAAAAGGGCGTCACTGTATGGCGCATCAAGGCTGGATCATGGGCGGAGATCCCCTCAAGGACTTCGCCGCACCAGGGTCTGATGTCTACCTCAGGCGTGAGGTGATACCATGGGGAGACAGTGTCAAGCTTCGATATGGCCGCAAGCCTGAGGATGTCCCATTCTTGTGGAATCACATGAAGGAATATGCAAAGAGCTGTGCAAGTATGTTTGATGGTCTGCGGCTAGACAATTGCCATAGCACACCCCTACATGTTGCTGAGTACATGCTAGATGCTGCACGGGAAGAGAATCCCGAGCTGTATGTTGTCGCTGAGCTGTTCACGGGATCTGAGGCTGTTGACAATGTGTTTGTGAACAGACTGGGCATCACGTCTCTCATAAGAGAGGCCATGTCAGCCCATGATGCTCATGAGGAGGGCCGGCTCACCTATCGATATGGTGGAGAACCTGTTGGCGCCTTTATGGACCCCTTAGCTACCAAGCCATTTGTGCCAGGCATTGCGCACGCCTTGTACATGGACGTCACCCACGACAATGAGAACCCATTCTTGGTTCGTTCAGTGTATGATGCTCTTGCAAGCTCTGCACTGGTTGCCATGGCTTGCTGTGCCACTGGGAGCAGTCGAGGTTACGATGAGCTGGTGCCGCATCAGGTTCATGTTGTGGAAGAAAAGAGACTATACATGTCTgcagaaagtaaaaaaaacaaagctccCCAGAAGGGCATGTTGTCTGCGGATGCGGGCATTATGACGACAAAAAGGGCAATCAATGAGTTGCATCGAAGATTAGGGGAAGAGGGATATTCACAGGTATACGTAGATCAAATCCATCAAGATGTGCATGCTATCACACGTCACTGCCCTGATAAGCGCAAGACTGTGGTGATGGTGGCCCACTCTGCCTTTTCCGACCCACCCGATCACCTGAAGCCTACACAAACGAATCTCCAGGTCAACATGCAAGGCATACCACCCCTCAATATTCCAGGAGAATTTGAAGAAATCCTCTTGGAGGCGATGATTGTAAAAACAGATGAGTCATCGGAATTCCAGAAAGACAATAAGTTTATCAATGGCTTACAGAGTCACAGAGTGTTGATGCAAAAAGGAGTTACTGCAGCCAAGTCTAAGACTTGCCGAGTTGTGCCTTCAGGGAGCAATAATTTCGAAGTGTTTTTCGATCACTTTGCTCCTGGGAGTGTTATCGCCTTCCAGGTCAGCATGGAACCCAAAGTGAAACAAGCTCTAGGAACGCTAAGATCCCTCTCTTGTGCCATGTACGATGTCACATCAACGGTTGATTCAGAGACCACGAGCTTGGTGAAGGAACTTGACACCATTGTCTCCAACCTGTCGTTGGCCGACCTAAACCGCGTGCTGTACCGTTGCCAGGATGAGGAGGCAGATGATGGTAACGGCGGAGGGGTGTACGTGCTTGAGGATGAAGGTGCTCTAACCTACTGTGGGCTGCAAGGTTTTTTGTCGGTGCTGACAAACGTCCGCCAGCATAACGATCTCGCGCACCCGATCTGCAGGAATCTCCGCGCTGGTTACTGGATGATGGGATACGTGGTGGACCGCCTCATGCCCTTTATCGGAACTAGACAGCTCGGTGTGTGGCTTGACAAGGTGTTCACTCTGGTGAAGTCTTGCCCACGGTACTTGATACCATGTTACTTTGACGCAGTCATCACACCCCTTTACTTGATGCTACTCAACAGGGCGTGGTCGTGCATGTCCAGCTTCGTCAAAGATGGCTCCTCATTCGTCAAGGCCTTATCGCTGGGTTCAGTCCAGTTCCTCGGTTTGACCCGGTCCGCAAGCCTCCCACCCCTCTCGCCCAATCTGTACCACGGCCCCAGCTCGGGTGCCGAGATGCCTACGCTGATGTGCATGGCGGCGGGGCTGCCTCACTTCTCCACGGGATTTATGCGCTGCTGGGGCCGTGACACGTTTATCTCGCTACGAGGACTGATGCTCACTACAGGGCGATACACAGATGCTAAGCATCACATCTTGGGTTTCGCTGGCTGCATTCGCCACGGACTCATCCCCAATCTCCTGGACGGGGGTCGGAATCCTCGGTACAACTGCAGGGACGCTGTGTGGTGGTGGCTTCAGGCCATACAGGACTACTGTACCATCGCACCTGATGGCCTCTCCATACTAAAGGAACCTGTCTCCAAGCTCTTCCGCTTTGACAACTCGGACAGGCAGGATCCGGGGTTGCAGGACAAGCCTCTGCATGACATCATGCAAGAAGCCATACAGCGCCAGTTTATTGGCGTCCAGTTCCGTGAACGAGGGGCGGGCCCAAATCTTGACTCACACATGAAGAACGAAGGTTTCAACGTGACCGTGTGTGTTAACGAGAGGACTGGGTTCGTGTATGGTGGGAACAAATGGAATGCTGGGACGTGGATGGACAAGGTCGGGGATTCTGTGCTCGCTGGAAACTACGGCGTGCCTGCCACCCCAAGGGATGGAAGTGCAGTGGAGATTGTCGGTCTGTTAAAGTCCACTGTTAAATGGCTAGCTGACCTTTGTGACAAGAAGCAGTTTCCGTACGCTGGTGTCTCCAAGCTGCAGGATGGTACTGGCCAACAAGGTTTCCCCATCTCCTGGTCATACCGGGAATGGAGTGAGAAGCTCAACTCCACCTTCGAGAGGTACTTCTGGATCCCAGAGGAGCCCAACCCAGAACTCGAGGGCGAAGAGATTAAACTTGTCCATAGGCGTGGTATCTACAAGGACAGCTACGGAGCCACGCATAGATTCGCTGACTTCCAGCTCAGACCAAACATCTGCATCGCCATGGCTGTGGCACCAGAGATGTTCAACCCGGCGCATGCGTGGAAGGCGCTTGATGTCGTTGAGGAAGTCCTTCTAGGGCCACTAGGCATGGCTACTCTAGATCATGCGGACTGGGCCTATGAGGGCGTCTACGACAATGCGGCTGACACCACGTCGTACAAGAGCTCCAAGGGGTTCTGCTACCACCAGGGCCCGGAATGGCTGTGGTGTATCGGGCCTTTCTTACGAGCCCGTCTTCATTTCGCGCACGTACTGAACGGCGAAAGCGGGCTCAACGAGACTGTCTTCAAGGTTCGCAAAGTGCTGTCCAAGCACAAAGAAGCCATGAATGCCTCCCCCTGGCGGAGCTTACCGGAGCTTACTAACGCAGGGGGGGCTCGATGCAGGGATTCGTGCGAGGCCCAGGCGTGGTCCGTGGCTTGTGTGCTGGACGTGCTGTATGACATCGAGCAGCTTCTGGCTCAGCACTGATGCCGTTCTGTTCGGGATACCTGTCGGTTGGTCGTCAAACAAGAGGGGCTGGTGAAGAAGGGTGATGTCATATCAACCACGGGAAACCCAAATACGATAGGAAAACCAAAAAGAACGCGCCAGAAACTACTGAAGTTGGGATAGTTCACGAGAGAAGATAGTCTTGTTGTACACGGGGTTTTATGGCATGCCGATTTGTTTAACaatattcttttattataCGTTTTTCATACCAGTATAAAAAACGTATAATAAGGGCATAGCATGGgatatggtaaaaaaaaaatatagtatGGAAGCTATAATATTCACTGTGTTCTTTTTCTGTCTTAGGAAACAGTGAAAGATtgattttatataataaaaataaaaggaatA

Protein

UniProt (Swiss-Prot top hit)

UniProt accession	Description
A8BQB4	Glycogen debranching enzyme OS=Equus caballus OX=9796 GN=AGL PE=2 SV=1
P35574	Glycogen debranching enzyme OS=Oryctolagus cuniculus OX=9986 GN=AGL PE=1 SV=1
Q2PQH8	Glycogen debranching enzyme OS=Canis lupus familiaris OX=9615 GN=AGL PE=2 SV=1

Gene family

Family type	Membership / link
Orthogroup (gene family)	OG0003738 (this species only)

Pfam domain

Pfam accession	Pfam name	Description	Type	Source
PF06202 all species →	GDE_C	Amylo-alpha-1,6-glucosidase	Repeat	Interproscan
PF14699 all species →	hGDE_N	N-terminal domain from the human glycogen debranching enzyme	Family	Interproscan
PF14702 all species →	hGDE_central	Central domain of human glycogen debranching enzyme	Domain	Interproscan
PF14701 all species →	hDGE_amylase	Glycogen debranching enzyme, glucanotransferase domain	Domain	Interproscan

InterPro

InterPro term	Type	Description	Source
IPR010401 all species →	Family	Glycogen debranching enzyme	Interproscan
IPR032790 all species →	Domain	Glycogen debranching enzyme, C-terminal	Interproscan
IPR029436 all species →	Domain	Eukaryotic glycogen debranching enzyme, N-terminal domain	Interproscan
IPR017853 all species →	Homologous_superfamily	Glycoside hydrolase superfamily	Interproscan
IPR008928 all species →	Homologous_superfamily	Six-hairpin glycosidase superfamily	Interproscan
IPR032788 all species →	Domain	Glycogen debranching enzyme, central domain	Interproscan
IPR032792 all species →	Domain	Glycogen debranching enzyme, glucanotransferase domain	Interproscan
IPR012341 all species →	Homologous_superfamily	Six-hairpin glycosidase-like superfamily	Interproscan
IPR006421 all species →	Family	Glycogen debranching enzyme, metazoa	Interproscan

PANTHER

PANTHER term	Description	Source
PTHR10569 all species →	GLYCOGEN DEBRANCHING ENZYME	Interproscan

Gene Ontology

GO term	Category	Description	Source
GO:0004134 all species →	Molecular Function	4-alpha-glucanotransferase activity	Interproscan
GO:0004135 all species →	Molecular Function	amylo-alpha-1,6-glucosidase activity	Interproscan
GO:0005980 all species →	Biological Process	glycogen catabolic process	Interproscan
GO:0005975 all species →	Biological Process	carbohydrate metabolic process	Interproscan
GO:0005978 all species →	Biological Process	glycogen biosynthetic process	Interproscan

Search by domain instead of by gene. Any accession above (InterPro, Pfam, PANTHER, GO, KEGG) can be used as a query on the Functional Domain Search page, which searches all 148 annotated genomes at once.

KEGG pathway

KO	Enzyme	Enzyme ID	Pathway	Map ID	Source
K01196	AGL; glycogen debranching enzyme	EC:2.4.1.25 EC:3.2.1.33	Starch and sucrose metabolism	ko00500	deepkoala

Searching by KO or pathway ID across all species is available on the KEGG Pathway page.

Expression pattern (RNA-seq)

Transcript abundance of XP_048587750.1 across 48 RNA-seq samples of Nematostella vectensis. Values are TPM (transcripts per million) from the StringTie quantification; one bar is one sample, grouped and coloured by condition, sorted by expression within each group.

48Samples

42TPM > 0

16Conditions

20.6Max TPM

10.4Mean TPM

By condition

Condition	Samples	TPM > 0	Mean TPM	Max TPM
whole 6 week old aboral regenerate · regenerate 96hpa	3	3	14.03	18.02
whole 6 week old aboral regenerate · regenerate 144hpa	3	3	9.48	12.83
whole 6 week old aboral regenerate · regenerate 0hpa	3	3	6.73	7.39
whole 6 week old aboral regenerate · regenerate 2hpa	3	3	9.25	10.47
whole 6 week old aboral regenerate · regenerate uncut	3	3	8.31	8.83
whole 6 week old aboral regenerate · regenerate 4hpa	3	2	7.08	10.75
whole 6 week old aboral regenerate · regenerate 120hpa	3	2	8.09	13.34
whole 6 week old aboral regenerate · regenerate 36hpa	3	3	15.64	20.61
whole 6 week old aboral regenerate · regenerate 24hpa	3	3	13.06	15.05
whole 6 week old aboral regenerate · regenerate 20hpa	3	3	14.29	14.53
whole 6 week old aboral regenerate · regenerate 16hpa	3	3	12.80	13.80
whole 6 week old aboral regenerate · regenerate 72hpa	3	3	13.48	15.10
whole 6 week old aboral regenerate · regenerate 60hpa	3	3	12.40	14.63
whole 6 week old aboral regenerate · regenerate 48hpa	3	2	8.07	16.64
whole 6 week old aboral regenerate · regenerate 8hpa	3	2	8.83	13.30
whole 6 week old aboral regenerate · regenerate 12hpa	3	1	4.16	12.49

Per sample · hover a bar for the full sample record · show / hide the sample table

SRA run	Condition	Tissue	Developmental stage	Treatment	Study	TPM
SRR6320863	whole 6 week old aboral regenerate · regenerate 96hpa	whole 6 week old aboral regenerate	six weeks	regenerate 96hpa	SRP125570	18.02
SRR6320836	whole 6 week old aboral regenerate · regenerate 96hpa	whole 6 week old aboral regenerate	six weeks	regenerate 96hpa	SRP125570	14.33
SRR6320837	whole 6 week old aboral regenerate · regenerate 96hpa	whole 6 week old aboral regenerate	six weeks	regenerate 96hpa	SRP125570	9.73
SRR6320847	whole 6 week old aboral regenerate · regenerate 144hpa	whole 6 week old aboral regenerate	six weeks	regenerate 144hpa	SRP125570	12.83
SRR6320838	whole 6 week old aboral regenerate · regenerate 144hpa	whole 6 week old aboral regenerate	six weeks	regenerate 144hpa	SRP125570	7.83
SRR6320841	whole 6 week old aboral regenerate · regenerate 144hpa	whole 6 week old aboral regenerate	six weeks	regenerate 144hpa	SRP125570	7.79
SRR6320846	whole 6 week old aboral regenerate · regenerate 0hpa	whole 6 week old aboral regenerate	six weeks	regenerate 0hpa	SRP125570	7.39
SRR6320839	whole 6 week old aboral regenerate · regenerate 0hpa	whole 6 week old aboral regenerate	six weeks	regenerate 0hpa	SRP125570	6.81
SRR6320840	whole 6 week old aboral regenerate · regenerate 0hpa	whole 6 week old aboral regenerate	six weeks	regenerate 0hpa	SRP125570	5.98
SRR6320861	whole 6 week old aboral regenerate · regenerate 2hpa	whole 6 week old aboral regenerate	six weeks	regenerate 2hpa	SRP125570	10.47
SRR6320842	whole 6 week old aboral regenerate · regenerate 2hpa	whole 6 week old aboral regenerate	six weeks	regenerate 2hpa	SRP125570	9.86
SRR6320848	whole 6 week old aboral regenerate · regenerate 2hpa	whole 6 week old aboral regenerate	six weeks	regenerate 2hpa	SRP125570	7.43
SRR6320844	whole 6 week old aboral regenerate · regenerate uncut	whole 6 week old aboral regenerate	six weeks	regenerate uncut	SRP125570	8.83
SRR6320843	whole 6 week old aboral regenerate · regenerate uncut	whole 6 week old aboral regenerate	six weeks	regenerate uncut	SRP125570	8.79
SRR6320845	whole 6 week old aboral regenerate · regenerate uncut	whole 6 week old aboral regenerate	six weeks	regenerate uncut	SRP125570	7.33
SRR6320849	whole 6 week old aboral regenerate · regenerate 4hpa	whole 6 week old aboral regenerate	six weeks	regenerate 4hpa	SRP125570	10.75
SRR6320872	whole 6 week old aboral regenerate · regenerate 4hpa	whole 6 week old aboral regenerate	six weeks	regenerate 4hpa	SRP125570	10.48
SRR6320873	whole 6 week old aboral regenerate · regenerate 4hpa	whole 6 week old aboral regenerate	six weeks	regenerate 4hpa	SRP125570	0.00
SRR6320882	whole 6 week old aboral regenerate · regenerate 120hpa	whole 6 week old aboral regenerate	six weeks	regenerate 120hpa	SRP125570	13.34
SRR6320883	whole 6 week old aboral regenerate · regenerate 120hpa	whole 6 week old aboral regenerate	six weeks	regenerate 120hpa	SRP125570	10.92
SRR6320850	whole 6 week old aboral regenerate · regenerate 120hpa	whole 6 week old aboral regenerate	six weeks	regenerate 120hpa	SRP125570	0.00
SRR6320855	whole 6 week old aboral regenerate · regenerate 36hpa	whole 6 week old aboral regenerate	six weeks	regenerate 36hpa	SRP125570	20.61
SRR6320851	whole 6 week old aboral regenerate · regenerate 36hpa	whole 6 week old aboral regenerate	six weeks	regenerate 36hpa	SRP125570	15.18
SRR6320852	whole 6 week old aboral regenerate · regenerate 36hpa	whole 6 week old aboral regenerate	six weeks	regenerate 36hpa	SRP125570	11.15
SRR6320854	whole 6 week old aboral regenerate · regenerate 24hpa	whole 6 week old aboral regenerate	six weeks	regenerate 24hpa	SRP125570	15.05
SRR6320853	whole 6 week old aboral regenerate · regenerate 24hpa	whole 6 week old aboral regenerate	six weeks	regenerate 24hpa	SRP125570	12.40
SRR6320856	whole 6 week old aboral regenerate · regenerate 24hpa	whole 6 week old aboral regenerate	six weeks	regenerate 24hpa	SRP125570	11.74
SRR6320860	whole 6 week old aboral regenerate · regenerate 20hpa	whole 6 week old aboral regenerate	six weeks	regenerate 20hpa	SRP125570	14.53
SRR6320857	whole 6 week old aboral regenerate · regenerate 20hpa	whole 6 week old aboral regenerate	six weeks	regenerate 20hpa	SRP125570	14.30
SRR6320859	whole 6 week old aboral regenerate · regenerate 20hpa	whole 6 week old aboral regenerate	six weeks	regenerate 20hpa	SRP125570	14.03
SRR6320880	whole 6 week old aboral regenerate · regenerate 16hpa	whole 6 week old aboral regenerate	six weeks	regenerate 16hpa	SRP125570	13.80
SRR6320881	whole 6 week old aboral regenerate · regenerate 16hpa	whole 6 week old aboral regenerate	six weeks	regenerate 16hpa	SRP125570	13.58
SRR6320858	whole 6 week old aboral regenerate · regenerate 16hpa	whole 6 week old aboral regenerate	six weeks	regenerate 16hpa	SRP125570	11.02
SRR6320864	whole 6 week old aboral regenerate · regenerate 72hpa	whole 6 week old aboral regenerate	six weeks	regenerate 72hpa	SRP125570	15.10
SRR6320862	whole 6 week old aboral regenerate · regenerate 72hpa	whole 6 week old aboral regenerate	six weeks	regenerate 72hpa	SRP125570	13.37
SRR6320865	whole 6 week old aboral regenerate · regenerate 72hpa	whole 6 week old aboral regenerate	six weeks	regenerate 72hpa	SRP125570	11.99
SRR6320866	whole 6 week old aboral regenerate · regenerate 60hpa	whole 6 week old aboral regenerate	six weeks	regenerate 60hpa	SRP125570	14.63
SRR6320867	whole 6 week old aboral regenerate · regenerate 60hpa	whole 6 week old aboral regenerate	six weeks	regenerate 60hpa	SRP125570	12.65
SRR6320869	whole 6 week old aboral regenerate · regenerate 60hpa	whole 6 week old aboral regenerate	six weeks	regenerate 60hpa	SRP125570	9.92
SRR6320870	whole 6 week old aboral regenerate · regenerate 48hpa	whole 6 week old aboral regenerate	six weeks	regenerate 48hpa	SRP125570	16.64
SRR6320871	whole 6 week old aboral regenerate · regenerate 48hpa	whole 6 week old aboral regenerate	six weeks	regenerate 48hpa	SRP125570	7.58
SRR6320868	whole 6 week old aboral regenerate · regenerate 48hpa	whole 6 week old aboral regenerate	six weeks	regenerate 48hpa	SRP125570	0.00
SRR6320874	whole 6 week old aboral regenerate · regenerate 8hpa	whole 6 week old aboral regenerate	six weeks	regenerate 8hpa	SRP125570	13.30
SRR6320875	whole 6 week old aboral regenerate · regenerate 8hpa	whole 6 week old aboral regenerate	six weeks	regenerate 8hpa	SRP125570	13.18
SRR6320876	whole 6 week old aboral regenerate · regenerate 8hpa	whole 6 week old aboral regenerate	six weeks	regenerate 8hpa	SRP125570	0.00
SRR6320877	whole 6 week old aboral regenerate · regenerate 12hpa	whole 6 week old aboral regenerate	six weeks	regenerate 12hpa	SRP125570	12.49
SRR6320878	whole 6 week old aboral regenerate · regenerate 12hpa	whole 6 week old aboral regenerate	six weeks	regenerate 12hpa	SRP125570	0.00
SRR6320879	whole 6 week old aboral regenerate · regenerate 12hpa	whole 6 week old aboral regenerate	six weeks	regenerate 12hpa	SRP125570	0.00

Source: CnidoSite RNA-seq expression matrices (NVECT_TPM, StringTie quantification over 48 runs), joined to SRA sample metadata. Samples whose tissue/treatment is not recorded in the source metadata are grouped by the descriptor carried in the expression matrix itself.