Gene detail

Detailed information of XP_048587774.1 in Nematostella vectensis

Genomic Location: NC_064041.1:4804213...4815741
NR annotation: XP_048587774.1, EGF domain-specific O-linked N-acetylglucosamine transferase [Nematostella vectensis]
Species Nematostella vectensis · all data for this species · gene families

Gene Structure

More details in JBrowse

Sequence

CDS

Transcript

rna-XM_048731817.1

GAGAGCAATTTCAAGTttagttaaaaaaagaaacattctAAGAAATTACAAACACAACGCGCGAAATGTGTAATCCCGCTGTCCAGCGACTTGCCGTAGCTACATGGCCGTGAGGCTTGGGGCCCAATGTTTTACCCTGTTTTCTGTACAAAGTTTCAAACAGTAGCGAAAACTTTTTAGAATGTCCCCATTTATTCTAAAACCCAAAGCTTTTATACGCAGAATGTGAAGATTATTTTCCTTTAGCACTTTTCATGAGTCTACTTCTACATTGAGCTTGATGGCGGCGTTAATATTCATGCCCCGGCGTCTTCTGTTATGGTCGCTTTGCTTGGCTTATCTTGTTGAATGCGAGATCTCTGTAGAAAGCGAGGAAACTACCCATCAAAGCAACCAACAGAGTTTCTTTGCAAACGAATTCAAGAAAGACGAGGAAACATGCCATGACCCGCAGAAATGCAAGGATGTTCCACTTGTGGAAAGTACAAAGTGTTGGGGTTATGAGTCAAGATGTTCTACTCCTGATAAATGGTACAAGAGGCCAGTGTGTGATGATTCCTCTGGGTGGAGACACTATTCATCAAATGAAGAGAAGGTTAATAGCTTTTGGACAGAGGCTGACTTTGGTTATGTCAAGAAATTTATAGATTCAACAAAAGATGTTTGTAAATCAGACAAGGTGAATGGTGGATCACTACAGTGCTCTAAGGAGCTTGGCTACTGCACTGCCAATAATCTGTACATGGATCTGCGCAAAGGCACTAGGACGCAAAACGAGAGgTTTAACCCTGAAATGCTGGCTGGGTTCTGTGACCTTGACCTTGCAGTGTTACAAGATCTAGGAGGGCACAGAATGGAGTTAACATCCTgGGTTGCAGAGATAGAGAAATACCAAAGCATTCCGTATGACCCCTTATCTGAGGGTCATTGTGATGTCATCATTGAAAGACCAACGTTCTTCATGAAGCTTGATGCTGTTGTGAACATGTACCATCATTTCTGTGATTTCTTCAACCTGTACGCCACACAGCATGTGAACGGATCCTTTagtactgatgtcaacattgtGCTCTGGGAGGCATACAAACGTGGGGGCCTGGGTAATTTTAGTCCCACATGGCGTGTGTTCACTCGCCATCCTTTGCTCTACCTTGGCCATGACTTTGCTGGAAAACGGGTGTGCTTCAAGCACGCCATTTTCTCATTGCTCCCTCGCATGGTCTTTGGTTTGTTCTACAACACTCCACTGACTCCTGGATGCTCAGGGAGTGGTCTGTTCAAGGCTTTTTCAAATCATCTTGTGAAGCGACTCGGGATTGTGCAAGAGCGCAATGAATCGGATGTTGATGCACCTGTACGTGTGACACTTTTATCCCGAGGAACAAAGTACCGAGATATACTGAATGAGAATGAGCTTGTGGAAGCTCTGAGCAGCCACCCAGCCATCTCACTGAAGATTGCAAAGTTTTCCTGGGATGTGCCCTTTTTAGACCAAATAAAGGTTACCCATAACACAGATGTGTTTCTTGGCATGCATGGTGCAGGTTTGACACATGCGCTCTTTCTGCCAGATTGGGCGGTGCTGTTTGAACTCTATAACTGTGATGACCCAAATTGCTACAAAGATTTAGCAAGACTGAGAGGGGTTAGCTATATCACATGGGAGGACAAGAATAAAGTTATAGAAAAAACAGAGgaaCTCCATCCTGAGTATTCAGAACACCCAAAGTTCAGGAACTATGCATTTGATGCGGAAGAGTTTATGAGGCTTGTAACATTAGCTGTTACTAAAGTTCGTGAAAACCTAAAGTCACACATCCAAAACACCTAGATATGAATCAACCTAGAAATATCACAAGACACAGTTGAACTGAGACTGAGACATTGCATGATCCAGTTGAGCTAACACTTAACATAGACAAATTAACATACCCACCAACCCCAGAAGATCTTGAGAACTGTTTatttggggaggggtggagtataTACCCTTGGCAGCCTTCAAATAAGTGGTTTGCTCTGCCTCCCTTtcattctattttattttttggctCAGTCATTTAAGTATAAAAATTCCTTTGAGGTTTtgatgcatgttttttttactactATAGGTGTTGTGTTTTTTAGTGTTTCGGGGTTGGATAAGCAGTAGTTACTAGGAAGTTCTCACAAGTCCTTAGGGTGAGAAGTTTAACCATAATTTCACAAAGTTAGGAATCGTTTAAAATGTCTATTTTTGGGACATAAAACAATTAAACCAAAGCATGCATAAAATTGTATATATTTACAAAATGTTTtatgaaaattgttttattttatatttatatcaGTTAAAGCTAATTATTTCAGTTCAAGCAAAGATGTTTCAGAAACTTATATTAGGTTTATATGCATGAAATGTGAACAAATAAaacggaaaaataaaaataaatgttgttATGATAATCAATAAACCAAGATGGTCTGAGCAGAA

Protein

UniProt (Swiss-Prot top hit)

UniProt accession	Description
Q5NDL3	EGF domain-specific O-linked N-acetylglucosamine transferase OS=Gallus gallus OX=9031 GN=EOGT PE=2 SV=2
Q08CY9	EGF domain-specific O-linked N-acetylglucosamine transferase OS=Xenopus tropicalis OX=8364 GN=eogt PE=2 SV=1
Q6GQ23	EGF domain-specific O-linked N-acetylglucosamine transferase OS=Xenopus laevis OX=8355 GN=eogt PE=2 SV=1

Gene family

Family type	Membership / link
Orthogroup (gene family)	OG0001830 (this species only)

Pfam domain

Pfam accession	Pfam name	Description	Type	Source
PF04577 all species →	Glyco_transf_61	Glycosyltransferase 61	Family	Interproscan

InterPro

InterPro term	Type	Description	Source
IPR049625 all species →	Domain	Glycosyltransferase 61, catalytic domain	Interproscan
IPR007657 all species →	Family	Glycosyltransferase 61	Interproscan

PANTHER

PANTHER term	Description	Source
PTHR20961 all species →	GLYCOSYLTRANSFERASE	Interproscan

Gene Ontology

GO term	Category	Description	Source
GO:0016757 all species →	Molecular Function	glycosyltransferase activity	Interproscan
GO:0005788 all species →	Cellular Component	endoplasmic reticulum lumen	Interproscan
GO:0097363 all species →	Molecular Function	protein O-acetylglucosaminyltransferase activity	Interproscan
GO:0097370 all species →	Biological Process	protein O-GlcNAcylation via threonine	Interproscan

Search by domain instead of by gene. Any accession above (InterPro, Pfam, PANTHER, GO, KEGG) can be used as a query on the Functional Domain Search page, which searches all 148 annotated genomes at once.

KEGG pathway

KO	Enzyme	Enzyme ID	Pathway	Map ID	Source
K18134	EOGT; EGF domain-specific O-GlcNAc transferase	EC:2.4.1.255	Glycosyltransferases	ko01003	deepkoala

Searching by KO or pathway ID across all species is available on the KEGG Pathway page.

Expression pattern (RNA-seq)

Transcript abundance of XP_048587774.1 across 48 RNA-seq samples of Nematostella vectensis. Values are TPM (transcripts per million) from the StringTie quantification; one bar is one sample, grouped and coloured by condition, sorted by expression within each group.

48Samples

34TPM > 0

16Conditions

5.3Max TPM

2.3Mean TPM

By condition

Condition	Samples	TPM > 0	Mean TPM	Max TPM
whole 6 week old aboral regenerate · regenerate 96hpa	3	2	2.10	3.27
whole 6 week old aboral regenerate · regenerate 144hpa	3	3	3.39	4.83
whole 6 week old aboral regenerate · regenerate 0hpa	3	3	2.50	3.00
whole 6 week old aboral regenerate · regenerate 2hpa	3	3	3.66	4.70
whole 6 week old aboral regenerate · regenerate uncut	3	3	2.76	3.28
whole 6 week old aboral regenerate · regenerate 4hpa	3	1	1.60	4.79
whole 6 week old aboral regenerate · regenerate 120hpa	3	2	3.00	4.57
whole 6 week old aboral regenerate · regenerate 36hpa	3	2	2.22	3.37
whole 6 week old aboral regenerate · regenerate 24hpa	3	2	1.90	3.45
whole 6 week old aboral regenerate · regenerate 20hpa	3	2	1.60	2.49
whole 6 week old aboral regenerate · regenerate 16hpa	3	3	2.27	2.89
whole 6 week old aboral regenerate · regenerate 72hpa	3	2	2.58	4.03
whole 6 week old aboral regenerate · regenerate 60hpa	3	2	2.46	3.83
whole 6 week old aboral regenerate · regenerate 48hpa	3	1	1.77	5.31
whole 6 week old aboral regenerate · regenerate 8hpa	3	2	2.43	4.58
whole 6 week old aboral regenerate · regenerate 12hpa	3	1	0.94	2.81

Per sample · hover a bar for the full sample record · show / hide the sample table

SRA run	Condition	Tissue	Developmental stage	Treatment	Study	TPM
SRR6320836	whole 6 week old aboral regenerate · regenerate 96hpa	whole 6 week old aboral regenerate	six weeks	regenerate 96hpa	SRP125570	3.27
SRR6320863	whole 6 week old aboral regenerate · regenerate 96hpa	whole 6 week old aboral regenerate	six weeks	regenerate 96hpa	SRP125570	3.03
SRR6320837	whole 6 week old aboral regenerate · regenerate 96hpa	whole 6 week old aboral regenerate	six weeks	regenerate 96hpa	SRP125570	0.00
SRR6320847	whole 6 week old aboral regenerate · regenerate 144hpa	whole 6 week old aboral regenerate	six weeks	regenerate 144hpa	SRP125570	4.83
SRR6320841	whole 6 week old aboral regenerate · regenerate 144hpa	whole 6 week old aboral regenerate	six weeks	regenerate 144hpa	SRP125570	2.95
SRR6320838	whole 6 week old aboral regenerate · regenerate 144hpa	whole 6 week old aboral regenerate	six weeks	regenerate 144hpa	SRP125570	2.37
SRR6320846	whole 6 week old aboral regenerate · regenerate 0hpa	whole 6 week old aboral regenerate	six weeks	regenerate 0hpa	SRP125570	3.00
SRR6320839	whole 6 week old aboral regenerate · regenerate 0hpa	whole 6 week old aboral regenerate	six weeks	regenerate 0hpa	SRP125570	2.59
SRR6320840	whole 6 week old aboral regenerate · regenerate 0hpa	whole 6 week old aboral regenerate	six weeks	regenerate 0hpa	SRP125570	1.90
SRR6320861	whole 6 week old aboral regenerate · regenerate 2hpa	whole 6 week old aboral regenerate	six weeks	regenerate 2hpa	SRP125570	4.70
SRR6320842	whole 6 week old aboral regenerate · regenerate 2hpa	whole 6 week old aboral regenerate	six weeks	regenerate 2hpa	SRP125570	3.43
SRR6320848	whole 6 week old aboral regenerate · regenerate 2hpa	whole 6 week old aboral regenerate	six weeks	regenerate 2hpa	SRP125570	2.86
SRR6320843	whole 6 week old aboral regenerate · regenerate uncut	whole 6 week old aboral regenerate	six weeks	regenerate uncut	SRP125570	3.28
SRR6320844	whole 6 week old aboral regenerate · regenerate uncut	whole 6 week old aboral regenerate	six weeks	regenerate uncut	SRP125570	2.77
SRR6320845	whole 6 week old aboral regenerate · regenerate uncut	whole 6 week old aboral regenerate	six weeks	regenerate uncut	SRP125570	2.24
SRR6320872	whole 6 week old aboral regenerate · regenerate 4hpa	whole 6 week old aboral regenerate	six weeks	regenerate 4hpa	SRP125570	4.79
SRR6320849	whole 6 week old aboral regenerate · regenerate 4hpa	whole 6 week old aboral regenerate	six weeks	regenerate 4hpa	SRP125570	0.00
SRR6320873	whole 6 week old aboral regenerate · regenerate 4hpa	whole 6 week old aboral regenerate	six weeks	regenerate 4hpa	SRP125570	0.00
SRR6320882	whole 6 week old aboral regenerate · regenerate 120hpa	whole 6 week old aboral regenerate	six weeks	regenerate 120hpa	SRP125570	4.57
SRR6320883	whole 6 week old aboral regenerate · regenerate 120hpa	whole 6 week old aboral regenerate	six weeks	regenerate 120hpa	SRP125570	4.44
SRR6320850	whole 6 week old aboral regenerate · regenerate 120hpa	whole 6 week old aboral regenerate	six weeks	regenerate 120hpa	SRP125570	0.00
SRR6320852	whole 6 week old aboral regenerate · regenerate 36hpa	whole 6 week old aboral regenerate	six weeks	regenerate 36hpa	SRP125570	3.37
SRR6320851	whole 6 week old aboral regenerate · regenerate 36hpa	whole 6 week old aboral regenerate	six weeks	regenerate 36hpa	SRP125570	3.30
SRR6320855	whole 6 week old aboral regenerate · regenerate 36hpa	whole 6 week old aboral regenerate	six weeks	regenerate 36hpa	SRP125570	0.00
SRR6320854	whole 6 week old aboral regenerate · regenerate 24hpa	whole 6 week old aboral regenerate	six weeks	regenerate 24hpa	SRP125570	3.45
SRR6320853	whole 6 week old aboral regenerate · regenerate 24hpa	whole 6 week old aboral regenerate	six weeks	regenerate 24hpa	SRP125570	2.26
SRR6320856	whole 6 week old aboral regenerate · regenerate 24hpa	whole 6 week old aboral regenerate	six weeks	regenerate 24hpa	SRP125570	0.00
SRR6320860	whole 6 week old aboral regenerate · regenerate 20hpa	whole 6 week old aboral regenerate	six weeks	regenerate 20hpa	SRP125570	2.49
SRR6320857	whole 6 week old aboral regenerate · regenerate 20hpa	whole 6 week old aboral regenerate	six weeks	regenerate 20hpa	SRP125570	2.31
SRR6320859	whole 6 week old aboral regenerate · regenerate 20hpa	whole 6 week old aboral regenerate	six weeks	regenerate 20hpa	SRP125570	0.00
SRR6320881	whole 6 week old aboral regenerate · regenerate 16hpa	whole 6 week old aboral regenerate	six weeks	regenerate 16hpa	SRP125570	2.89
SRR6320880	whole 6 week old aboral regenerate · regenerate 16hpa	whole 6 week old aboral regenerate	six weeks	regenerate 16hpa	SRP125570	2.38
SRR6320858	whole 6 week old aboral regenerate · regenerate 16hpa	whole 6 week old aboral regenerate	six weeks	regenerate 16hpa	SRP125570	1.53
SRR6320865	whole 6 week old aboral regenerate · regenerate 72hpa	whole 6 week old aboral regenerate	six weeks	regenerate 72hpa	SRP125570	4.03
SRR6320862	whole 6 week old aboral regenerate · regenerate 72hpa	whole 6 week old aboral regenerate	six weeks	regenerate 72hpa	SRP125570	3.72
SRR6320864	whole 6 week old aboral regenerate · regenerate 72hpa	whole 6 week old aboral regenerate	six weeks	regenerate 72hpa	SRP125570	0.00
SRR6320866	whole 6 week old aboral regenerate · regenerate 60hpa	whole 6 week old aboral regenerate	six weeks	regenerate 60hpa	SRP125570	3.83
SRR6320867	whole 6 week old aboral regenerate · regenerate 60hpa	whole 6 week old aboral regenerate	six weeks	regenerate 60hpa	SRP125570	3.56
SRR6320869	whole 6 week old aboral regenerate · regenerate 60hpa	whole 6 week old aboral regenerate	six weeks	regenerate 60hpa	SRP125570	0.00
SRR6320870	whole 6 week old aboral regenerate · regenerate 48hpa	whole 6 week old aboral regenerate	six weeks	regenerate 48hpa	SRP125570	5.31
SRR6320868	whole 6 week old aboral regenerate · regenerate 48hpa	whole 6 week old aboral regenerate	six weeks	regenerate 48hpa	SRP125570	0.00
SRR6320871	whole 6 week old aboral regenerate · regenerate 48hpa	whole 6 week old aboral regenerate	six weeks	regenerate 48hpa	SRP125570	0.00
SRR6320874	whole 6 week old aboral regenerate · regenerate 8hpa	whole 6 week old aboral regenerate	six weeks	regenerate 8hpa	SRP125570	4.58
SRR6320875	whole 6 week old aboral regenerate · regenerate 8hpa	whole 6 week old aboral regenerate	six weeks	regenerate 8hpa	SRP125570	2.70
SRR6320876	whole 6 week old aboral regenerate · regenerate 8hpa	whole 6 week old aboral regenerate	six weeks	regenerate 8hpa	SRP125570	0.00
SRR6320877	whole 6 week old aboral regenerate · regenerate 12hpa	whole 6 week old aboral regenerate	six weeks	regenerate 12hpa	SRP125570	2.81
SRR6320878	whole 6 week old aboral regenerate · regenerate 12hpa	whole 6 week old aboral regenerate	six weeks	regenerate 12hpa	SRP125570	0.00
SRR6320879	whole 6 week old aboral regenerate · regenerate 12hpa	whole 6 week old aboral regenerate	six weeks	regenerate 12hpa	SRP125570	0.00

Source: CnidoSite RNA-seq expression matrices (NVECT_TPM, StringTie quantification over 48 runs), joined to SRA sample metadata. Samples whose tissue/treatment is not recorded in the source metadata are grouped by the descriptor carried in the expression matrix itself.