Gene detail

Detailed information of XP_048588251.1 in Nematostella vectensis

Genomic Location: NC_064042.1:10349379...10382055
NR annotation: XP_048588250.1, GTPase-activating protein isoform X1 [Nematostella vectensis]
Species Nematostella vectensis · all data for this species · gene families

Gene Structure

More details in JBrowse

Sequence

CDS

LOC5512688

ATGGCTGAAATAAAACCACCAGAGTTTAAAGAAGGAGACAAGCTAAGATCCATTCGAAGAAGGCTCAAGCTACTAAAACAAGAAATATCCGAGCTGAGCAAAAAGAACTACGAGCTAGAACGAGATGTGAAGTTTTTTGACCAAAGAATAGCTCTCCTAATAAACCACAGAATTGCGGTTGAGGAATTGTCGGACCGGATAGGAGATTACGATAGGAGAGTTGGTGTATTGAAAGATGAGCTTCAGCAACAGCGTTTCGGGAACCTTTTTTATCTGCTGCAGACTGAGCCATCCTATCTCGCCCAGTTGTCAAGGATAGTTTCCTTGAGTGAGATTGACTCCCTGCTACAACCTGTGATGTTTTCCCTTTATGGCAACCAGTATGAAACAAGAGAAGAGTACCTCCTGCTCTCTATGTTTGAGTTGGCTCTCAAATATGAATTCGCAGAGTCTGAAAACTTCAATAGTTTGCTTCGAGCCAACACAGCAATCTCGCGGATGATGACTACTTATACAAGAAGAGGACCCGGTCAGGAATATTTAAAGTGTACTCTGGAGGAGCCTTTAAATGATCTTATGTCTCAGGAAGACTTGGTGCTTGAAATTAATCCCATCAAGGTTTACATTGAGCTGTATGGCCACCCGATGGATGAGAGTTCTCTTACTTTAGAGAGAGCCATGGATGATCCTGAGGTCATGTTCAGAACTAAACTTCGGATAAAGAAGCTCCAAGACATATCGTCCTTGTTTCTTGGTATAATCATCAGCTCACTCTCTCAAGTGCCCTATGGGATACAATGGCTCTGCCGTGCCATTAAGGAATTAGCCATGGAAAAATTCCCAGAAGCCACTCCTGAGCAAATCAATGCTATGATTGGTGGATTTTTCCTATTGAGATTCATCAATCCTGCAATTGTCACTCCTACAGCCTACATGCTAGTCAATAAACAACCTACATATACTATGAGAAGAAACCTAACTCTGATTGCCAAGATACTGCAGAGTATGGCTAACAAGAACGTTGTCAGCAGTCATTTTAAAGAGGAATACATGCAACCCCTCCAGCCGTTTGCAATTAACCATGTAGACTTAATGCAGAGTTTTCTAAGTGATTTGTCATCAGTTCCCGATTTTCATGAAAGTTTAGAGATGGAGCATTACTTATCCTTGTCAAAAGATATCAAGATATCAATCACCCTGAATGAAATGTACAAGATTCATGAACTCATCACGAGACACACTGATTACTTGGCGTTAACGGAAGACGACCCACTGCACATTTTACTGGATGAGCTTGGCCAGGCAGAGCATCAGCTTCCTTGTGTGGAAGATTGCACTATACACCTTGTCTTAACAAATAAATGGGGAGCGTCCAAACAAGTGTTTCGTGCGGAGTCAGTAGAATCTACCTTTAGTAAGAAGTTGGAGAGCGAAGCCGTCAAAGAGCAGTGCCGACGTTTGCTGGTCAAGTTATTAAGTCTGTGCCCCGCCCTCATGATGGAATCTTCCCTCCTGAACGCCATCAAACGAGCGCAACTGGAACCAGAAACAGACTGGGGCAGGATAGGGGCTTATCTACTGCAGAGGTTCCAAGGCGTCGAGGAGTTCACTTCTGTCCTGGAGGGCGACAAGATCTTTTTCCAGCAAATCAAAGAAGAAGTTCAACTCAAACTGATGAAATACGAAAAATTAGAACTAGAATTGAAAAGCCTTCAAAGAGTGTACGAGGCCTTAAATGATCATGGACAGTTCCTACGGGAACAGCTGGATGCGTACAAAGAATACTTAGTTGCGGTACGGACAAGAGCTGCGTCAGTCTCAAAGGCTCAAAAGAGGGGGAGTTTTGGTAGCTCATCATCGCAAGGAGGCAATAAGCAGATACGGTTCTCGTACAACCAGCTTGAGCGAGAGGGAGTGATAATAGAGACGCAGGGGATACCAGTCCACAGGAAGTCTGATATATCTGTAACTTTAGCATCTCCTGAGCCCGGTATCTACACCATCGCCTTGTATTACAAAGGCAAGACGAGTAAAGCGTACGAGACCGATCTTAACCTAGAAGAACTTCTCGAGAAACAGCACTTGAGCGACCCGGTCCTCCATCTAAATGATTTTGTCGTCGTGGATGTGAAGAGAACGCTGCTACTTTTGCATAAATATTTTGCGTCTACTTAA

Transcript

rna-XM_048732294.1

GCATTCCGCGTCACGTGTTTTGGGAATATCACATGTGAAAATATTGACAGATATTGATTTCTCTGCGGCACAGTTCTGTACGGAAAGCGAGCAATTCGGAAATGATGCTGCAAGCTGCTAGTCATTCAATCCTGCTGCAATGAGGGGGTTGGAACGATGGTATTCTTGTTTAATAGAAACACTGAAGACGTTATAGATGAATGGACGTATTTTGTAGAAGAAAGCTcatcgaattttttttttggtgcgTGTTGAAATGATACTTTGTGGACGTTAAAAGAAACGCTTTAAAACGTTTAAATATGGCTGAAATAAAACCACCAGAGTTTAAAGAAGGAGACAAGCTAAGATCCATTCGAAGAAGGCTCAAGCTACTAAAACAAGAAATATCCGAGCTGAGCAAAAAGAACTACGAGCTAGAACGAGATGTGAAGTTTTTTGACCAAAGAATAGCTCTCCTAATAAACCACAGAATTGCGGTTGAGGAATTGTCGGACCGGATAGGAGATTACGATAGGAGAGTTGGTGTATTGAAAGATGAGCTTCAGCAACAGCGTTTCGGGAACCTTTTTTATCTGCTGCAGACTGAGCCATCCTATCTCGCCCAGTTGTCAAGGATAGTTTCCTTGAGTGAGATTGACTCCCTGCTACAACCTGTGATGTTTTCCCTTTATGGCAACCAGTATGAAACAAGAGAAGAGTACCTCCTGCTCTCTATGTTTGAGTTGGCTCTCAAATATGAATTCGCAGAGTCTGAAAACTTCAATAGTTTGCTTCGAGCCAACACAGCAATCTCGCGGATGATGACTACTTATACAAGAAGAGGACCCGGTCAGGAATATTTAAAGTGTACTCTGGAGGAGCCTTTAAATGATCTTATGTCTCAGGAAGACTTGGtgcttgaaattaatcccatCAAGGTTTACATTGAGCTGTATGGCCACCCGATGGATGAGAGTTCTCTTACTTTAGAGAGAGCCATGGATGATCCTGAGGTCATGTTCAGAACTAAACTTCGGATAAAGAAGCTCCAAGACATATCGTCCTTGTTTCTTGGTATAATCATCAGCTCACTCTCTCAAGTGCCCTATGGGATACAATGGCTCTGCCGTGCCATTAAGGAATTAGCCATGGAAAAATTCCCAGAAGCCACTCCTGAGCAAATCAATGCTATGATTGGTGGATTTTTCCTATTGAGATTCATCAATCCTGCAATTGTCACTCCTACAGCCTACATGCTAGTCAATAAACAACCTACATATACTATGAGAAGAAACCTAACTCTGATTGCCAAGATACTGCAGAGTATGGCTAACAAGAACGTTGTCAGCAGTCATTTTAAAGAGGAATACATGCAACCCCTCCAGCCGTTTGCAATTAACCATGTAGACTTAATGCAGAGTTTTCTAAGTGATTTGTCATCAGTTCCCGATTTTCATGAAAGTTTAGAGATGGAGCATTACTTATCCTTGTCAAAAGATATCAAGATATCAATCACCCTGAATGAAATGTACAAGATTCATGAACTCATCACGAGACACACTGATTACTTGGCGTTAACGGAAGACGACCCACTGCACATTTTACTGGATGAGCTTGGCCAGGCAGAGCATCAGCTTCCTTGTGTGGAAGATTGCACTATACACCTTGtcttaacaaataaatggGGAGCGTCCAAACAAGTGTTTCGTGCGGAGTCAGTAGAATCTACCTTTAGTAAGAAGTTGGAGAGCGAAGCCGTCAAAGAGCAGTGCCGACGTTTGCTGGTCAAGTTATTAAGTCTGTGCCCCGCCCTCATGATGGAATCTTCCCTCCTGAACGCCATCAAACGAGCGCAACTGGAACCAGAAACAGACTGGGGCAGGATAGGGGCTTATCTACTGCAGAGGTTCCAAGGCGTCGAGGAGTTCACTTCTGTCCTGGAGGGCGACAAGATCTTTTTCCAGCAAATCAAAGAAGAAGTTCAACTCAAACTGATGAAATACGAAAAATTAGAACTAGAATTGAAAAGCCTTCAAAGAGTGTACGAGGCCTTAAATGATCATGGACAGTTCCTACGGGAACAGCTGGATGCGTACAAAGAATACTTAGTTGCGGTACGGACAAGAGCTGCGTCAGTCTCAAAGGCTCAAAAGAGGGGGAGTTTTGGTAGCTCATCATCGCAAGGAGGCAATAAGCAGATACGGTTCTCGTACAACCAGCTTGAGCGAGAGGGAGTGATAATAGAGACGCAGGGGATACCAGTCCACAGGAAGTCTGATATATCTGTAACTTTAGCATCTCCTGAGCCCGGTATCTACACCATCGCCTTGTATTACAAAGGCAAGACGAGTAAAGCGTACGAGACCGATCTTAACCTAGAAGAACTTCTCGAGAAACAGCACTTGAGCGACCCGGTCCTCCATCTAAATGATTTTGTCGTCGTGGATGTGAAGAGAACGCTGCTACTTTTGCATAAATATTTTGCGTCTACTTAATTTAGACTCCCTTTGGACGTTCATTCGGGTCAGGAATCTACTTTGATTGTTTTCCAAATTAAAAGGAAATCAAAAAAGATCTACCCAAACTAGTTTATTATTATCgtcaattttgtaaaaaaaaatagcagtTATCTCTAGTaagagaaaatgaaaaaaacaatctTAACAGTAAACCAGACATATCCAGAGTGtcatatatattttgtatacgccaaaataatatttctgtttaatatattttgtatttgCTCAAATTGCgaagtttatttttgttgtacaAGATGTAAACGCATAGGACATTAAAAGTGTCAAGACTTTCAGTCAACAGtgataattaaaaaaagaacttttCATCACA

Protein

UniProt (Swiss-Prot top hit)

UniProt accession	Description
P33277	GTPase-activating protein OS=Schizosaccharomyces pombe (strain 972 / ATCC 24843) OX=284812 GN=gap1 PE=4 SV=1
Q54K32	Ras GTPase-activating-like protein rgaA OS=Dictyostelium discoideum OX=44689 GN=rgaA PE=1 SV=1
O00899	Ras GTPase-activating-like protein gapA OS=Dictyostelium discoideum OX=44689 GN=gapA PE=1 SV=1

Gene family

Family type	Membership / link
Orthogroup (gene family)	OG0002529 (this species only)

Pfam domain

Pfam accession	Pfam name	Description	Type	Source
PF00616 all species →	RasGAP	GTPase-activator protein for Ras-like GTPase	Family	Interproscan
PF03836 all species →	RasGAP_C	RasGAP C-terminus	Family	Interproscan

InterPro

InterPro term	Type	Description	Source
IPR001936 all species →	Domain	Ras GTPase-activating domain	Interproscan
IPR000593 all species →	Domain	RasGAP protein, C-terminal	Interproscan
IPR008936 all species →	Homologous_superfamily	Rho GTPase activation protein	Interproscan

PANTHER

PANTHER term	Description	Source
PTHR14149 all species →	RAS GTPASE-ACTIVATING PROTEIN WITH IQ MOTIF	Interproscan

Gene Ontology

GO term	Category	Description	Source
GO:0043087 all species →	Biological Process	regulation of GTPase activity	Interproscan
GO:0005515 all species →	Molecular Function	protein binding	Interproscan
GO:0005096 all species →	Molecular Function	GTPase activator activity	Interproscan
GO:0005938 all species →	Cellular Component	cell cortex	Interproscan
GO:0046580 all species →	Biological Process	negative regulation of Ras protein signal transduction	Interproscan

Search by domain instead of by gene. Any accession above (InterPro, Pfam, PANTHER, GO, KEGG) can be used as a query on the Functional Domain Search page, which searches all 148 annotated genomes at once.

KEGG pathway

No KEGG orthology assignment for XP_048588251.1.

Searching by KO or pathway ID across all species is available on the KEGG Pathway page.