Gene detail

Detailed information of XP_048588894.1 in Nematostella vectensis

Genomic Location: NC_064042.1:15628057...15649662
NR annotation: XP_048588894.1, twitchin [Nematostella vectensis]

Gene Structure

More details in Jbrowse

Sequence

CDS

Transcript

rna-XM_048732937.1

atgctctatgatgtcaaatacaAGCCATCCATTTTTCCCAAGCCTCCTGATCAAACCGTCAACGAGACCACAGGCTTACTTAAACTGACATGTAAGTCTGACGGCTACCCCGCGCCGACCTACAAGTGGTCTAGAGATGGAGTAGTGGTGTCACTGACCAGTGTGTATAACAGAAACAATATGACCAGGTCAGAGGCAGGGACGTACATGTGCACAGCTACTAATGAGATGGGGAGTGACACAACCACGGTACAAGTCACCGTCAACTATAAACCAGAGATGGTGTTTTCGACTACCAACACGTCGTCTTGGGGTGGAAAAAACCTGAGCCTGCAGTGCAATGCCAGAGGTGTACCATCACCTCAGATCACGTGGTACAAGTCTGGCGGTAAGCCAATCACAGCTGGAGTAAGCCCCATCTCCGGAGGCAGCCAGCTCCAAGTTACAACAACTCAATACGCAGGGGACTATGGACAGTACAAGTGCCGGGCGTCTAACTTGTTGGGGTCCGTGGAACGCCTGATCTACGTCACTCAATTGTTCGCTCCAGGCCCTCCCATCATCACGGTGTCAAATATCGAGGCGTCATCCATCAAAGTCAACTGGGCCCCTCCTTCATCTGATGGCGGCAGCCCTGTCATCGACTACAAGGTGGAAGTGGATCCTGCAAAACCGCCCCGTGAGGGGGTGCCTGGGGGCCAAGTTGTCATCTCAGATCTTACAAAGAATACAGAGTATACTGTAAAAGTGACCGCGCGGAACGTTGTTGGTTATGGCGACGCTGGGACGGAAATTATCCGAACTAAAAAGCAAGGACCCCCCTCGCAACCGTTTCTCAAACCTGTTGACAATACTACGACAAGCGAGGAAATCACCCTGGAATGGAGCAAACCCGACGAGAACGGTGGCGCCATCCAGGCCTACATCGTGTACTTCATGTTGACTTTCCCTGATGGCCAGAAGACAGACTGGACTGAAACCGCTAACATCACAGACCTCTCAGTGCTGAGCTACACATTCAAGGGCATGAAGCCAGGAAGGACTTACAGCTTCCTGGTCACCGCGTACAACCAGTACGGAGAGAGCGCTAGGGATTATACCAAAGCACGCGTGGTGCAGGTCAACGAGATGAGCACAAATAAACCCGATGCGGGTGAGCGTGGCGCAGGCCCCGGGGGGTCCAACATGGCGGCGATAGGGGGTGCGGTCGGCGGGGTCATCCTCGTGGTGCTCGTGGCGGGAATTATCTTTGTCGTGCTCCGACGCAAACGACTGCAGAAGCCAGGTGGTGCTCCACGAAACGAGAGCCAACAAGAGATAAATCCATACGACATCACAGACCACCGTACGGCCGCGACTAACGAGGGGAATGGGGCCGAGGACGAGGGTCCGACCTATGCTGTCGTCGACAAgacgaagaagaagaagaaaaaagcgCAAGATGACATTCCTGTGTACGCTGAGGTCGACAAAACAAAGAAGCGGAAGCCCGGGGAGATCGTGTATGCGGAGCTAGCAGACTTCAACTCCGTCATGGACGAGGCAGCTGCCTCTGCCACGAAACCTGCTGCCTACCAGGAAACCGCCTACGCTGACATCACCGAGTTCCAGAAAGCAGAGGACCCCACCTATGCTAACGTTCCTGGCCAACAGGAAGTTACCTATGGCAACATACAGAGCATGTAAATTACCAGGAAGTCACGGCGGACAGGGAAGTGATACTAAACAGAAACACAATAAATGAACATCATTATTAGGCCAGGAAACTACCCCTAGGCTGTGGTGGAAATACCATCAAACCCGAAAACTACCTGTAGAGGCTAGAGAACTATACCACAAGACAAAAGAACTAGAGCATAGCACTACCACTAGACTAGAAAATACCACTAAACCCGGAAACCTCCACTAACCTGGAAACTATCTCTAGAAACAAGAGAACTATACCACTAGACAAAATAACTACCACTAGAACATAGTATTTCCCCAGAAAACTACCATTATACCAGGTAATACCAATAGACCAGGAAACTACCATTATACCAGGTGATACCAATAGACCAGGAAACAACAATTATACCAGGTAATACCAATAGACCAGGAAACTACCATTATCCTCCAGCCCTCTTCCTAAAATTCTAATTGTTGGGCCAAGCTAGTGCTACCACCAGGCCTCCTGGTCTGACTAACCGAAAAAGGCCAGTTTTGAACTTGGTTTTGAACGATTTTTTGAACGTTTTAATACAGGAAGATAGAGAAATTTCATGATGCATGTTAATAAATTCGttagtatttatttttataaatttactctttatagggtgtacaGACATCATTAGAGGAAAGTAGTTTGTAATTGATGACAACGTAAAGTATTTTTGTATGCATAGATTTtatagatatatttttgtggttttaatgtatttttataCTATATTGTATGTAGGTCACTGGAAGCAAAATATTTGATATTCTTAGACTAGATTTCAAGGGTGCCATCAGATTGATTGACACATTGAAAAGTAAACTGTTTGATCCCAGGGTCCTTTGGGTAATTTCAAAATGGCACCTTTTTCGGTTGAGCTTTTTTCCACAGGGAGACCAAAGTCAAGTTGTCTCGTTTCCAGTCTGTCTGACTGAGAGGAGCCATTTTTAAATTACTCAAAAGTCATTTGAACGCAAATAGATGTTTTGATAGCATTTGATAATGTGAGAATGTTGCGTTTTGAAAGTAAGGAAtaatttcaaatttaaattttgtgaGTTAATTATACGTTTCGTGGTGAATCGAAAATAATTCGTCAGATAAGAATAATTGTAATTGTTAATAATTTTTAGTATTGGCAAGTTATCGCTATAAATGAAAAGTAAacgttttgataaaaataactgtaagattttattttgtattttacaATGAAATAAACTTCGTTAGTGTTGAA

Protein

Uniprot

Uniprot term	Description
P13591	Neural cell adhesion molecule 1 OS=Homo sapiens OX=9606 GN=NCAM1 PE=1 SV=3
P13595	Neural cell adhesion molecule 1 OS=Mus musculus OX=10090 GN=Ncam1 PE=1 SV=3
P13590	Neural cell adhesion molecule 1 OS=Gallus gallus OX=9031 GN=NCAM1 PE=1 SV=3

Pfam domain

Pfam accession	Pfam name	Description	Type	Source
PF00041	fn3	Fibronectin type III domain	Domain	Interproscan
PF13927	Ig_3	Immunoglobulin domain	Domain	Interproscan

InterPro

InterPro term	Type	Description	Source
IPR013783	Homologous_superfamily	Immunoglobulin-like fold	Interproscan
IPR007110	Domain	Immunoglobulin-like domain	Interproscan
IPR003599	Domain	Immunoglobulin subtype	Interproscan
IPR003961	Domain	Fibronectin type III	Interproscan
IPR036116	Homologous_superfamily	Fibronectin type III superfamily	Interproscan
IPR051170	Family	Neural and epithelial cell adhesion domain-containing protein	Interproscan
IPR036179	Homologous_superfamily	Immunoglobulin-like domain superfamily	Interproscan
IPR003598	Domain	Immunoglobulin subtype 2	Interproscan

PANTHER

PANTHER term	Description	Source
PTHR12231	CTX-RELATED TYPE I TRANSMEMBRANE PROTEIN	Interproscan

Gene Ontology

GO terms	Category	Description	Source
GO:0005515	Molecular Function	protein binding	Interproscan

KEGG pathway

KO	Enzyme	Enzyme ID	pathway	mapID	Source
K06531	NECTIN2, PVRL2, CD112; poliovirus receptor-related protein 2	-	CD molecules	ko04090	deepkoala