Genomic Location: NC_064042.1:13086807...13093438
NR annotation: XP_048588982.1, amiloride-sensitive amine oxidase [copper-containing] [Nematostella vectensis]
Species Nematostella vectensis · all data for this species · gene families
| CDS |
| LOC5506426 |
| Transcript |
| rna-XM_048733025.1 |
| Protein |
| XP_048588982.1 |
| UniProt accession | Description |
|---|---|
| Q9TRC7 | Diamine oxidase [copper-containing] OS=Sus scrofa OX=9823 GN=AOC1 PE=1 SV=3 |
| P36633 | Diamine oxidase [copper-containing] OS=Rattus norvegicus OX=10116 GN=Aoc1 PE=2 SV=1 |
| Q8JZQ5 | Diamine oxidase [copper-containing] OS=Mus musculus OX=10090 GN=Aoc1 PE=2 SV=1 |
| Family type | Membership / link |
|---|---|
| Orthogroup (gene family) | OG0000848 (this species only) |
| Pfam accession | Pfam name | Description | Type | Source |
|---|---|---|---|---|
| PF01179 all species → | Cu_amine_oxid | Copper amine oxidase, enzyme domain | Domain | Interproscan |
| PF09248 all species → | DUF1965 | Domain of unknown function (DUF1965) | Domain | Interproscan |
| PF02727 all species → | Cu_amine_oxidN2 | Copper amine oxidase, N2 domain | Domain | Interproscan |
| InterPro term | Type | Description | Source |
|---|---|---|---|
| IPR049948 all species → | Conserved_site | Copper amine oxidase, TPQ-binding site | Interproscan |
| IPR015798 all species → | Domain | Copper amine oxidase, catalytic domain | Interproscan |
| IPR015328 all species → | Domain | Domain of unknown function DUF1965 | Interproscan |
| IPR015800 all species → | Domain | Copper amine oxidase, N2-terminal | Interproscan |
| IPR000269 all species → | Family | Copper amine oxidase | Interproscan |
| IPR049947 all species → | Conserved_site | Copper amine oxidase, copper-binding site | Interproscan |
| IPR036460 all species → | Homologous_superfamily | Copper amine oxidase, catalytic domain superfamily | Interproscan |
| IPR016182 all species → | Homologous_superfamily | Copper amine oxidase, N-terminal | Interproscan |
| PANTHER term | Description | Source |
|---|---|---|
| PTHR10638 all species → | COPPER AMINE OXIDASE | Interproscan |
| GO term | Category | Description | Source |
|---|---|---|---|
| GO:0005507 all species → | Molecular Function | copper ion binding | Interproscan |
| GO:0008131 all species → | Molecular Function | primary methylamine oxidase activity | Interproscan |
| GO:0009308 all species → | Biological Process | amine metabolic process | Interproscan |
| GO:0048038 all species → | Molecular Function | quinone binding | Interproscan |
| GO:0005886 all species → | Cellular Component | plasma membrane | Interproscan |
| KO | Enzyme | Enzyme ID | Pathway | Map ID | Source |
|---|---|---|---|---|---|
| K11182 | AOC1, ABP1; diamine oxidase | EC:1.4.3.22 | Tryptophan metabolism | ko00380 | deepkoala |
Transcript abundance of XP_048588982.1 across 48 RNA-seq samples of Nematostella vectensis. Values are TPM (transcripts per million) from the StringTie quantification; one bar is one sample, grouped and coloured by condition, sorted by expression within each group.
| Condition | Samples | TPM > 0 | Mean TPM | Max TPM | Mean, relative to max |
|---|---|---|---|---|---|
| whole 6 week old aboral regenerate · regenerate 96hpa | 3 | 3 | 7.06 | 9.35 | |
| whole 6 week old aboral regenerate · regenerate 144hpa | 3 | 3 | 5.39 | 7.33 | |
| whole 6 week old aboral regenerate · regenerate 0hpa | 3 | 3 | 5.44 | 6.18 | |
| whole 6 week old aboral regenerate · regenerate 2hpa | 3 | 3 | 5.05 | 5.70 | |
| whole 6 week old aboral regenerate · regenerate uncut | 3 | 3 | 6.59 | 8.04 | |
| whole 6 week old aboral regenerate · regenerate 4hpa | 3 | 2 | 3.01 | 4.82 | |
| whole 6 week old aboral regenerate · regenerate 120hpa | 3 | 2 | 4.44 | 7.73 | |
| whole 6 week old aboral regenerate · regenerate 36hpa | 3 | 3 | 5.69 | 6.49 | |
| whole 6 week old aboral regenerate · regenerate 24hpa | 3 | 2 | 3.07 | 5.47 | |
| whole 6 week old aboral regenerate · regenerate 20hpa | 3 | 2 | 2.53 | 4.15 | |
| whole 6 week old aboral regenerate · regenerate 16hpa | 3 | 3 | 3.00 | 3.65 | |
| whole 6 week old aboral regenerate · regenerate 72hpa | 3 | 2 | 4.08 | 6.61 | |
| whole 6 week old aboral regenerate · regenerate 60hpa | 3 | 3 | 6.54 | 8.00 | |
| whole 6 week old aboral regenerate · regenerate 48hpa | 3 | 2 | 4.09 | 6.80 | |
| whole 6 week old aboral regenerate · regenerate 8hpa | 3 | 2 | 2.71 | 4.77 | |
| whole 6 week old aboral regenerate · regenerate 12hpa | 3 | 1 | 1.29 | 3.86 |
Source: CnidoSite RNA-seq expression matrices (NVECT_TPM,
StringTie quantification over 48 runs), joined to SRA sample
metadata. Samples whose tissue/treatment is not recorded in the source metadata are grouped
by the descriptor carried in the expression matrix itself.
