Genomic Location: NC_064043.1:8585502...8661720
NR annotation: XP_048589683.1, neurobeachin-like isoform X1 [Nematostella vectensis]
Species Nematostella vectensis · all data for this species · gene families
| CDS |
| LOC5513525 |
| Transcript |
| rna-XM_048733726.1 |
| Protein |
| XP_048589683.1 |
| UniProt accession | Description |
|---|---|
| Q8NFP9 | Neurobeachin OS=Homo sapiens OX=9606 GN=NBEA PE=1 SV=3 |
| Q9EPN1 | Neurobeachin OS=Mus musculus OX=10090 GN=Nbea PE=1 SV=1 |
| P50851 | Lipopolysaccharide-responsive and beige-like anchor protein OS=Homo sapiens OX=9606 GN=LRBA PE=1 SV=4 |
| Family type | Membership / link |
|---|---|
| Orthogroup (gene family) | OG0002506 (this species only) · gene tree & orthology |
| Ubiquitin family | UBD|Other|Beta-prp · all ubiquitin genes in this species |
| Pfam accession | Pfam name | Description | Type | Source |
|---|---|---|---|---|
| PF20425 all species → | Neurobeachin | Neurobeachin alpha solenoid region | Repeat | Interproscan |
| PF13385 all species → | Laminin_G_3 | Concanavalin A-like lectin/glucanases superfamily | Domain | Interproscan |
| PF06469 all species → | DUF1088 | Neurobeachin-like, DUF1088 | Domain | Interproscan |
| PF15787 all species → | DUF4704 | Neurobeachin/BDCP, DUF4704 alpha solenoid region | Repeat | Interproscan |
| PF20426 all species → | NBCH_WD40 | Neurobeachin beta propeller domain | Repeat | Interproscan |
| PF02138 all species → | Beach | Beige/BEACH domain | Family | Interproscan |
| PF14844 all species → | PH_BEACH | PH domain associated with Beige/BEACH | Domain | Interproscan |
| InterPro term | Type | Description | Source |
|---|---|---|---|
| IPR011993 all species → | Homologous_superfamily | PH-like domain superfamily | Interproscan |
| IPR036372 all species → | Homologous_superfamily | BEACH domain superfamily | Interproscan |
| IPR000409 all species → | Domain | BEACH domain | Interproscan |
| IPR046852 all species → | Domain | Neurobeachin, alpha-solenoid region | Interproscan |
| IPR001680 all species → | Repeat | WD40 repeat | Interproscan |
| IPR016024 all species → | Homologous_superfamily | Armadillo-type fold | Interproscan |
| IPR010508 all species → | Domain | Neurobeachin-like, DUF1088 | Interproscan |
| IPR015943 all species → | Homologous_superfamily | WD40/YVTN repeat-like-containing domain superfamily | Interproscan |
| IPR031570 all species → | Domain | Neurobeachin/BDCP, DUF4704 | Interproscan |
| IPR046851 all species → | Domain | Neurobeachin, beta-propeller domain | Interproscan |
| IPR013320 all species → | Homologous_superfamily | Concanavalin A-like lectin/glucanase domain superfamily | Interproscan |
| IPR036322 all species → | Homologous_superfamily | WD40-repeat-containing domain superfamily | Interproscan |
| IPR023362 all species → | Domain | PH-BEACH domain | Interproscan |
| IPR050865 all species → | Family | BEACH Domain-Containing | Interproscan |
| PANTHER term | Description | Source |
|---|---|---|
| PTHR13743 all species → | BEIGE/BEACH-RELATED | Interproscan |
| GO term | Category | Description | Source |
|---|---|---|---|
| GO:0005515 all species → | Molecular Function | protein binding | Interproscan |
| GO:0005829 all species → | Cellular Component | cytosol | Interproscan |
| GO:0008104 all species → | Biological Process | protein localization | Interproscan |
| GO:0016020 all species → | Cellular Component | membrane | Interproscan |
| GO:0019901 all species → | Molecular Function | protein kinase binding | Interproscan |
| KO | Enzyme | Enzyme ID | Pathway | Map ID | Source |
|---|---|---|---|---|---|
| K24181 | LRBA; lipopolysaccharide-responsive and beige-like anchor protein | - | Membrane trafficking | ko04131 | deepkoala |
Transcript abundance of XP_048589683.1 across 48 RNA-seq samples of Nematostella vectensis. Values are TPM (transcripts per million) from the StringTie quantification; one bar is one sample, grouped and coloured by condition, sorted by expression within each group.
| Condition | Samples | TPM > 0 | Mean TPM | Max TPM | Mean, relative to max |
|---|---|---|---|---|---|
| whole 6 week old aboral regenerate · regenerate 96hpa | 3 | 3 | 8.27 | 8.76 | |
| whole 6 week old aboral regenerate · regenerate 144hpa | 3 | 3 | 6.71 | 9.98 | |
| whole 6 week old aboral regenerate · regenerate 0hpa | 3 | 3 | 6.51 | 7.87 | |
| whole 6 week old aboral regenerate · regenerate 2hpa | 3 | 3 | 5.68 | 6.68 | |
| whole 6 week old aboral regenerate · regenerate uncut | 3 | 3 | 5.83 | 6.50 | |
| whole 6 week old aboral regenerate · regenerate 4hpa | 3 | 3 | 7.44 | 12.59 | |
| whole 6 week old aboral regenerate · regenerate 120hpa | 3 | 3 | 7.78 | 8.88 | |
| whole 6 week old aboral regenerate · regenerate 36hpa | 3 | 3 | 6.75 | 7.14 | |
| whole 6 week old aboral regenerate · regenerate 24hpa | 3 | 3 | 5.28 | 7.33 | |
| whole 6 week old aboral regenerate · regenerate 20hpa | 3 | 3 | 6.82 | 7.72 | |
| whole 6 week old aboral regenerate · regenerate 16hpa | 3 | 3 | 6.96 | 8.24 | |
| whole 6 week old aboral regenerate · regenerate 72hpa | 3 | 3 | 10.81 | 17.30 | |
| whole 6 week old aboral regenerate · regenerate 60hpa | 3 | 3 | 7.38 | 9.13 | |
| whole 6 week old aboral regenerate · regenerate 48hpa | 3 | 3 | 5.88 | 7.83 | |
| whole 6 week old aboral regenerate · regenerate 8hpa | 3 | 3 | 9.34 | 11.06 | |
| whole 6 week old aboral regenerate · regenerate 12hpa | 3 | 3 | 7.25 | 7.97 |
Source: CnidoSite RNA-seq expression matrices (NVECT_TPM,
StringTie quantification over 48 runs), joined to SRA sample
metadata. Samples whose tissue/treatment is not recorded in the source metadata are grouped
by the descriptor carried in the expression matrix itself.
