Gene detail

Detailed information of XP_048589961.1 in Nematostella vectensis

Genomic Location: NC_064044.1:13282112...13284117
NR annotation: XP_048589961.1, gastrula zinc finger protein XlCGF17.1-like [Nematostella vectensis]

Gene Structure

More details in Jbrowse

Sequence

CDS

Transcript

rna-XM_048734004.1

CCCAGAATGCATCGCCAAAAGCTTCGAAATGGCGGCCAAACACAGAACACGAAGTTCAGGAAAGAAATCACAAGAAAGCGATCATTGTTATCACAAACCTGGCAAATCTATTAACGATCATTTGTGCATTGAGGAGAGTTCTACCAAGTATACACAGGAGAGTGAAGAACTTGATAAAAGACAACGGCCACCTAAAAAAAGGAGTTTCGAGTGTGACCTCTGTGGTAAATGCTTCAGTCAGTCTGGACATCGCAACGTACACAGAAGGACACATTTGGGTGAGAGGCCGTACAAATGTGAGCAATGTGGTAAATACTTTTCACGGGCTGGACACCTCAAGAGACATGCTCTCACACATACAGGAGAAAAGCCACATCAGTGTCCTCAGTGTGGTAAATGTTTCGCACTGGCTGGAAACCTCAAGACACATGCTCTCACACATACAGGAGAAAAGCCACAACAGTGTCCTCAGTGTGGTAAATTCTTTGCACAGGCTGGACACCTCAAGAGACATGCTTTCACACATACAGGAGAAAAGCCACAACAGTGTCCTCAGTGTGGCAAATGCTTTGCACAGGCAGGAGATCTCAAAAGACATGCTCTCACTCATACAGGAGAAAAGCCACATCAGTGTCCTCAGTGTGGCAAATTCTTTGCACAGGCTAGCAGTCTCAAGACACATGCTCTCACACATACAGGAGAAAAGCCACAACAGTGTCCTCAGTGTGGCAAATGCTTTGCACATGCTGGACACCTCAAGACACATGCACTTACACATACAGGAGAAAAGACACATCAGTGTCCTCAGTGTGGTAAATTCTTTGCACAGGCAGGAGATCTCAAAAGACATGCTCTCACACATACAGGAGAAAAGACACATCAGTGTCCTCAGTGTGGCAAATTCTTTGCACAGGCAGGAGATCTCAAAAGACATGCTCTCACACATACAGGAGAAAAGCCACATCAGTGTCCTCAGTGTGGTAAATGCTTTGCACTGGCTAGCAGTCTCAAGACACATGCTCTCACGCATACAGGAGAAAAGCCACATCGGTGTCCTCAGTGTGGTAAATGCTTTGCACTGGCTAGCAGTCTCAAAAGACATGCATCTACACatgcatgaaaaaaaacacattttttgtttacttAGATTAGTACTGTAAATGCTTTACACTAGCTATTCACTCCAAAGCCCATGCTCTCTACCATACTGTAAGACATCCATGTCATTCAAGTCTGCATGCAAAAAGTGTCATTCAAAAATCTATCTGTTAAATCAATGTCTTTCATTTGTCATACAACAGTTGGCAGTACAAATCCTTAAACTGTTTTGCGATCGAGGCACACTGCTAGTGTGCTTcaacaatagaaaaaaaaacaaagaaaagaaataatgACAACATCTCACCGTTTTATTTAGTTTTGGTGCCCacttgaaaaatacaagcttGGGGAGAAAAGAAAGGCTGGGCCGGTCTAACCTGGCAAGCTTGTAACATGTGACAGAGTATCAGTCATTCCCAAGCATGAAGGCCAGGTCACCTGAGGGCAgaattgttttctttacatCAGAGCAAGGATAGTTGTGGTTGTTTTTGTGTCAGTTGAGCTTAGAAAATTGGATAGCTCTCCACAGAACTCCATCCACTTGGATCTTATTTGACTCACACAGTCAAGACAACCACGAAGTTCTCATTGCAGATGGAAAATCATTGCTTCTTGAGTTTGAGGACCTCAACGGTATTAGCTAAATACCCTAATTAAGCGCTTTGTAAGCTGCAATGGCCGCTTGCTCATTGGTAGTTGAGTTATGACTTGGTTGGGTTTCATATGGTACTCACTAGCTGAAGCGAGCTGAACTGAGCTAGAGACATGTAGGGGTAAAGGGTGGGGTAGGGGTAAAGGGTGGGGTACTGAACTTTATATCTATGCCTAATCAAGGAGAATGCTGAACATGTTGAACGGTTGTACATGTTTAAACTGTTCTATTAAAGGTTTAATTTTTCTAA

Protein

Pfam domain

Pfam accession	Pfam name	Description	Type	Source
PF00096	zf-C2H2	Zinc finger, C2H2 type	Domain	Interproscan

InterPro

InterPro term	Type	Description	Source
IPR013087	Domain	Zinc finger C2H2-type	Interproscan
IPR036236	Homologous_superfamily	Zinc finger C2H2 superfamily	Interproscan

PANTHER

PANTHER term	Description	Source
PTHR24399	ZINC FINGER AND BTB DOMAIN-CONTAINING	Interproscan

Gene Ontology

GO terms	Category	Description	Source
GO:0000978	Molecular Function	RNA polymerase II cis-regulatory region sequence-specific DNA binding	Interproscan
GO:0001227	Molecular Function	DNA-binding transcription repressor activity, RNA polymerase II-specific	Interproscan
GO:0005654	Cellular Component	nucleoplasm	Interproscan
GO:0006357	Biological Process	regulation of transcription by RNA polymerase II	Interproscan

KEGG pathway

KO	Enzyme	Enzyme ID	pathway	mapID	Source
K09228	KRAB; KRAB domain-containing zinc finger protein	-	Transcription factors	ko03000	deepkoala