Gene detail

Detailed information of XP_048590447.1 in Nematostella vectensis

Genomic Location: NC_064044.1:11507205...11509983
NR annotation: XP_048590447.1, kinetochore protein spc24 [Nematostella vectensis]
Species Nematostella vectensis · all data for this species · gene families

Gene Structure

More details in JBrowse

Sequence

CDS

Transcript

rna-XM_048734490.1

GGGCAAATAGTTCTCAGCCGCCATTTTCAAAAGTTCGCGCGCACAACAAATTAACAAGGCCTTCACGATGTCCAACCCGAATTTGAATCTTATCAATGAAATAACAACGATTCTTGCGAGTAACGATGATGCTGAAGCAGTCGAAAATGCCGCAGTAGAGTTAAACGAGGTCATTCATTACCGCAAACTCGAGCAAGAAGAAATCTTCAACTCGATTCGACAGTTGACCGCCAAAACTGAATCGGATTCGGAGAAACTGTTAAAGCTAGATGGCACAAGTCAGAACAGGACAATCGGAGAATTGAAGACCGCAACCAAAAAATTGAGCTCAGAAATCAAGGGTATCGAAACAGAAATCAAACTTGTAGAACATGGAATTGGAGAAAGCAAGAAAATGCTTGAAGAGAAACGAAAAGAACAGGAGTCGGAGACGAGTGAGCTGTTGCCCAAGACCAAATACAACTTCAAACTTTACACGAATATCTCTCATATCAGATGGAATTACGAGAGCGAGGATGATCATATTGCTGGTTTTATCGCATGCTTGAAGAATGTGAAACCGTTCGATTTGAACGCCAAGCAAAACTCCGAGTATTTTATTGCGAACTATCTTTGGGATATGATCGAAACAAGCATTGATTGACTGTACTACTCCGTTAATAGACAATAACAGGTTAGTTTTAACATGGATAAaacattttacaaaattaCTGAAGGGACAATTTGGTCGTAATtttttctccccccccccctcccctagacaTAAAAAGTACATAACGAGTACCCCCCCTTGGCTTGGGGTCCATGTTGAGGCCTGATTAGATCCCCTTTGGAAGTTCTGCTCCTCTACCATTCCTTTGGAATTTCAAGTCCCCCCAAATGACATTGGGTGCCTCACTCTAcaaatagagtggttttcacaAACCCATGGAACACACTTTTGAGTATATTTATCGCTATAGTACATTAGACTGCTTACTGTCCTTTCTTTTGCAAACATCAGtgaaaataagaaagaaaTGTATATCTGTGTTGTATGTGGTCCTAGGTCATCTCTGTCATGCAACAGGAGGGGGGACCTGCCTCTGTGGCAAGCAGAGCAATTAACTATGCATAAACAAACTAATGACCTGGGGTGGTCTCATGTGTGCAACACAAACATactttttctcttattttaaCTGATGTTTACCAAAGGAGAGGCTTTAAGCAGTCTACTTTTACCttccattattttttgtgtgtgtgctGGCTTGGCTTTGACTATTACAATTTATGTAATGAGccttaaattaaaattaaaacactTAAATTAGTAAATTGTAAGAAGATTTTAAACTAGTTGTTTTAACTGTTTTTAGAGGCTATCGAAATatatattgtatttttaaacaaacatTGGCCTTGTGAAATgtagtgtttatttttttgcacatGAAAATGAAACATTTGAATAAGCaccaaacttttttttattttgagcaAAAAATTCTGTCAACATCAATTCAATTTATTAAATGCAGCTCATCAAAGCATTTTGTCTAAAGCAAAAGCATATTACTTGTATTTGATGCCAAATTCTCTAACTTTTGATGGTCTGCAAGGATGACATCTTATACTGCAGCAAACACCTGCACATAAGAACCTAGAGATTAAAACCTGCAGGTTGAAATTTGGCATTTTAAGCACCCTTTTTATCAGCCTGGTGGGAAAGAATAGGTTCTTATTTTAAAGATCACTAGAaacctttttcaaaattctGATTTACAGTTGATAATGCACTAGCAATTTGAAATCCCCATCTCCATGGTCCCAAGCAGTTTTGAACAAGAATCTGTCCTGAAGGGGGTGGtgaaattgatattttttttttctcttagagATGTCCTCACCCTAGGGAAGTAGGAACCTGAGGGTAGTGGCTTATCTTAGATTGCTTGTTGGCTAAAATTTCATGTACTTTACTTGTAAATGTTTGCATCTTAGATTGCTTGTTGGCTAAAATTTCATGTACTGTACTTGTAATGTTTGCATCTTAGATTGCTTGTTGGCTAAAATTTCATGTACTGTACTTGTAATGTTTGCATCTTAGATTGCTTGTTGGCTAAAATTTCATGTACTGTACTTGTAATGTTTGCATCTTAGATTGCTTGTTGGCTAAAATTTCATGTACTTTACTTGTAATGTTTGCATCTTAGATTGCTTGTTGGCTAAAATTTCATGTACTGTACTTGTAATGTTTGCATCTTAGATTGCTTGTTGGCTAAAATTTCATGTACTGTACTTGTAATGTTTGCATCTTGGATTGCTTGTTGGCTAAAATTTCATGTACTGTACTTGTAATGTTTGCACCACAAGGGCTAGGGGCATTTGAGTTTGCAGTTTTGTGGTCGCTTTTTCAGTTTTGTTCAGGATTAAAATCAAATCCCCCACACTTCCcagggaccatgggggtgggggtttcaaatgactagtggaaaacaagaaagaaaGGATACTTTTCATAAATTTTTGGTGCACTGTATGCTGTGGTTAAATACAACATGGGCTTAAATGTTGTGTTTAGAAAACATTCTGACTAGAGACTGTTATAGTTTagtctatataaaaaaatgagaatGAAATAAGAACCTTGCCTGATTTGTCAAAAGGTAACCCAatttataagaacctattcAGCTTGCGATTGTAATTGTacacccattttgtaatatgtTGCTGACACCACCTGTTATTCAGCCTTGTGATGAGAGGCGGTAATAAACTGATGATTGCataa

Protein

UniProt (Swiss-Prot top hit)

No Swiss-Prot hit above the reporting threshold for this gene.

Gene family

Family type	Membership / link
Orthogroup (gene family)	OG0009911 (this species only)

Pfam domain

Pfam accession	Pfam name	Description	Type	Source
PF08286 all species →	Spc24	Spc24 subunit of Ndc80	Family	Interproscan

InterPro

InterPro term	Type	Description	Source
IPR013252 all species →	Family	Kinetochore-Ndc80 subunit Spc24	Interproscan

PANTHER

PANTHER term	Description	Source
PTHR22142 all species →	UNCHARACTERIZED	Interproscan

Gene Ontology

GO term	Category	Description	Source
GO:0007059 all species →	Biological Process	chromosome segregation	Interproscan
GO:0008017 all species →	Molecular Function	microtubule binding	Interproscan
GO:0031262 all species →	Cellular Component	Ndc80 complex	Interproscan

Search by domain instead of by gene. Any accession above (InterPro, Pfam, PANTHER, GO, KEGG) can be used as a query on the Functional Domain Search page, which searches all 148 annotated genomes at once.

KEGG pathway

KO	Enzyme	Enzyme ID	Pathway	Map ID	Source
K11549	SPBC24, SPC24; kinetochore protein Spc24, animal type	-	Chromosome and associated proteins	ko03036	deepkoala

Searching by KO or pathway ID across all species is available on the KEGG Pathway page.