Gene detail

Detailed information of XP_048590648.1 in Nematostella vectensis

Genomic Location: NC_064044.1:12672306...12674640
NR annotation: XP_048590648.1, gastrula zinc finger protein XlCGF57.1 [Nematostella vectensis]

Gene Structure

More details in Jbrowse

Sequence

CDS

Transcript

rna-XM_048734691.1

TCTGCTGGGTCTCCTTGCTGCAACATAGAACAAGGGAATGACCTCTTGGATTCAAACTGGACGTTATCGACCATTAACACACTTCCAAAAGTCACTCAAAAGTATTCACATACAGATGAGCAAATGGGGCAACAACAGGAAAGCTTGAATAATTCattgcaaaataaaatgaatacaCTAAAACAAACTTTTAGATTTAAGAAGTCAGCGGTAAAACAAGAGTTTATAGGCGAGAAAATAGGATTACAACAAGGATATCCCCAGGCATCCGATGAAGATGTGGAGAATCTTCTAGAACCCTCTCGATTGCAATCAACTGTCACAGTGAAACACGAGAGACCAGAGTCGCAACGTGTGGCTCTTGAGGAGTTAGTGCAAGGTCTGGAAAATGTTATAGAGCCTTCAACTGTCACATTTAGACAAGAACAACTCAAAACAGTGGAGGGACCATGGACGCAATGTGAAGCTCTGCAGACATTAGACCGAGGTATCGAGAATATTCTGGAGGCTTCTAGATTGCCACCAACACTCACAGTTAAGCAAGAACAACTCGAAACAGAAGAGAGACCAGAGTTGCAACGTGAATCATTAGACCAAGGAGTGAGGAATATTCTAGAACAATCCGAACCACTCCAAACAGGACAGGCTGGAGAGTCACGGAAAGAAATCCTGCAGCCATTAGACCAAGATTTTGGGAATGTTTTAGAACATTCTAGATGCCTGACTTGTGACAAATCATTTTCTTCAGCTTTTCACCTGGAGCTGCACAACCGTGTTCATGTGGAGTATCGACCTCACGCCTGTTGGATGTGTCACAAGGCCTTCAAGCACAAAACAGCTCTGGTGCTACATAAAAAGACGCACTTGGAGTATCAAGAGTGGCGGGTAAGACTAAAAACGCTTCCACATAAGTGTAGGGTTTGTTCTGCTGGATTTCCAACACTGTGTAAACAAAGGCGCCATGAGAGGAGCCATCAAAAGAACCGTCagtttaagtgtaataagtgTAGCTGGGCTTTCCCATGGAAATGCGAGTTGGTTCGCCACCAAACACGTCACACTGAGAAATATGTCCATATCTGTTACGATTGCGGCAGGGGCTTTTCCACCGCGATTGTAATGAAGCGGCACAAGTTTGGCATGAATCCCTTTAAGTGTGAGATGTGTGAGCAAGATTTTCCTGGACAAACAGAGTTAGCAGAGCACGTGCGAAAGCACGTTGGTGAAAAACCATTTGAGTGTGAGACATGCGGGAAACGCTTTTCTTCCCAAGGTTCCTTTAAAATCCACTTAAACTCCCATGGCAACGAGAAACCATATTCTTGTTATGTTTGTGGGAAAGCATTCCGCCTTAGAGGAAACATGCTGCAGCATCTGAGAAGCCACACCCTCGAGAAACCGTACAAATGTGCTCTCTGCGATAAAGCTTTCAGCCATTCAAGTCATTGCAATCGTCATATGGAGACTGTGCACTCCACCACTCGGCCTTACGCGTGCGACAAATGCCCTAGGACATTCAAATGCCGCAGTACTCGTAACACCCATTTGAAGCTTCATACTCAGGGCGTCGATGAGAAATCGTTTGTTTGTGAGATCTGTGGTAAGGGCTTAAGAACTAAGAGTAGTCTTAGGGATCATAGAAAAACGCATACGGATAATAAACCGTTTGTGTGCGAGGAATGCGGCAAGACATTCCGCGCGAATCATAACTTGGTTAATCATGTTTTAACTCACGCTGCGAGTAGGATGTTCCATTGTGTGAATTGCGGAACTGGATTTGGGCCTTCTGTCCGTGCTCTTAAGCGCAAACAAGGGATGGAGATTGAGAGAGAAGAGTACTGCAATCTATGTAAACCGAAGCACACCTCGCGTTTCCAATGCGAAACATGCGGCCGAGAGTTCTATCGACGTTACGAGTTCAAGTTACACGTGGCTTCTCACAGTAAAACTCGCCCATTTCAGTGTGAACTCTGCGATGCTGGTTTCTTTAAAATGAGAGAACTAAAAAATCACATGTTACTGCATAAGAGCGACGACCTAGCCAATATGAAATGAAAAGAGGTTTGGACCACAATGCAGAGATGCCTGATAATATGGGTATGTTTGCTAGGGGGACCTTATTTATTTCTGCCAGCAAGGCATGATGCAACTCTGGCAGTTGAATGAAACTTTATTGTGAcattttggattttttgggGGTGAAAGTATAGTATGAAAATTGGAAAGAAATATTCTGTTAGCAAATTTAATCAAGTCACAATGTTGTGGTAGAATTATATAGTTAATAGAAAAAGCTGGGAAATATTTCTTTAAACCCTAATAATGAGAAACgtaa

Protein

Pfam domain

Pfam accession	Pfam name	Description	Type	Source
PF00096	zf-C2H2	Zinc finger, C2H2 type	Domain	Interproscan
PF12874	zf-met	Zinc-finger of C2H2 type	Domain	Interproscan

InterPro

InterPro term	Type	Description	Source
IPR013087	Domain	Zinc finger C2H2-type	Interproscan
IPR036236	Homologous_superfamily	Zinc finger C2H2 superfamily	Interproscan
IPR050752	Family	C2H2-type zinc-finger domain-containing protein	Interproscan

PANTHER

PANTHER term	Description	Source
PTHR24384	FINGER PUTATIVE TRANSCRIPTION FACTOR FAMILY-RELATED	Interproscan

Gene Ontology

GO terms	Category	Description	Source
GO:0000978	Molecular Function	RNA polymerase II cis-regulatory region sequence-specific DNA binding	Interproscan
GO:0000981	Molecular Function	DNA-binding transcription factor activity, RNA polymerase II-specific	Interproscan
GO:0006355	Biological Process	regulation of DNA-templated transcription	Interproscan

KEGG pathway

KO	Enzyme	Enzyme ID	pathway	mapID	Source
K09228	KRAB; KRAB domain-containing zinc finger protein	-	Transcription factors	ko03000	deepkoala