Gene detail

Detailed information of XP_065050984.1 in Rhopilema esculentum

Genomic Location: ScUbCFx_1658:3298495...3320204
NR annotation: no NCBI-NR hit recorded
Species Rhopilema esculentum · all data for this species · gene families

Gene Structure

More details in JBrowse

Sequence

CDS

LOC135680755

ATGTCTGAATCTGATGAGTGCCCGCTTTGTATGGAAGTAATGGAAATTGATGATCTGAATTTCTTCCCATGTTCTTGTGGATATCAGATATGCAGGTTTTGTTGGCATAGGATACGAACTGATGAAAATGGGTTATGTCCTGCATGCAGAAAGCAATACTCTGAAGACCCTGCAATGTACCAACCACTTTCGAAAGATGAGATCCAAAAGATAAAAAGAGAAAGAAAACAGAGAGAGGCTCAACGGAAGCAAAAAATATCAGAAAGTAGGAAGCATCTATCAAATGTCAGGGTTATACAGAAAAATTTATTATTTGTTGTTGGCTTGTCTCAGAGGCTGGCAGACATTGAGCTTTTGAAGAAACATGAATACTTTGGAAAATATGGGAAAATCATGAAAGTTATTATAAATCCAAGTACAAATTATGCTGGTCCCCAAGGTCCAAGTGCCAGTGCATATATAACATATAGCAAAGAAGAGGAGAATTTGAAGGCCATATTAGCTGTAAATAATATCCAACAAGATGGCAGAACTTTGAGAGTATCACTAGGAACAACAAAATATTGCACCCACTTTCTACGAAATATGCAGTGTAAAAATCCAGATTGTATGTATTTGCACGAAATGGGGGATGATAATGCTTGTTTTACTAAAGAAGATATGCAGCAAGGGAAGCACCTAGCCTATGAGAGAGATTTATTAGAAAACTTTCAAAAAACGCAGTTGATACGAAGGAAAAGCCAAGATATTGAGCAGGAGCCTCAACAATGTCAGCAAAAAGAAGAGTGGCCACAAGAAATTAATGAAGGAAATCAGAATTCGGCATTACCTGCCAGAGCTGCTTGGGCTGAAAAGGAATGCGAAAAGGACGCCAATGAACTTGAAAAAGAGCGGACAGAAGAAGATCCACAGTTAAGCTCATCTTGGTCTTCTGGTAGCGAATTTAAAGACAGACCAGAGATCGGCAATGATGAACCTAAAATTGAAAGAAGTGATTCATTTACAAGCAATAGCCCTGCAATACTTGGAAGTAGTTTACCGAAGGAGATCTTACACCCAACATTTGCAACCGGATGGGCCACGTCTGAGGAGACAAAAGAATTTAGCCAGACACCGAATGGCCCAGTTGAAGACCGCAGTGACTCATCATACATGTCTTCCTTTTGGCCAGTCAGCGATCTTGGATTGAAGAACCTACGAGTGACAAATGATGATGAATTAGGCTTCGATCCATTTGATGAATGCAACAAAGGCTTAGCAGACCTTTTGGCTTCTGAGAAACAAGCTGCACTTGGAAGCAACATCCAAGAAGTGAAACCAAATGCGAGTCGGGCAACATGGCCCGATTTAACGGCAGATACAAGCAAAGATATGTTTACTCAAATAAACAAAGATGTTAGTCAACAATATTCGTTATTTGGAAATACATCACAAGGGCTGCATGGCAATTCGTTTTTTGGATCGTATTTCAATATGCAACAAAATCCAACAACTTCAGGACATCACCAATTGTTTGGACCTGAACACGGTTCCCCTTTCCAGCAAGCAAACAACTTCGGACAGAATGCACAACAACCTCAGAAGTCAAAGTCAAATGGTACAGATGTTTTGGCGTGGCAAGATGGACTTAGAGCTCTGCTGCCTAATGTGAATATTAGTTTCTCGGCGTCGAAGAGGCCTCCGCCCGGTTTTGATTCCTCGTCATCGCAGTTAGAGAGCTCTATTTGGACCAAAATCAATCAAAATGAAAAGCAAAACACATCGCCATCAGGAATTCAACCACATCCTTTTCCAACGCAGGCAAATGTTAAGCCCGGGTCGGTGAATGTCCCGGCTCCGGATCAAATGCCACACCCGGTCACCCCATGGAATGCCATTGTAGGTAGAGCCCATGCTAGTACAGGCCCTTTGCAGGAAAGCCTTTCAAGTCAAGGTGTGGAAGTGAAGACCACTGTAAAGCCAGTGACTGCATTTGCGAAAGGGAACCCAATGAAAAGTCAAAAACCCACTGCAAAAGTGAAGCCTCAAATGAAATGTGTGGTCTCACCAACCGTGGAGGCACAGCCAATCATCCAGCAAGCAGCGGACGGCCGCCCATCGTCTTTGTCACGCATGAACGATCTCGATGATATCAGCTTGACAGATCCCTTGCCCCTCCCTATAAACAGTGGTGCAGGAACCACAGGTAATGTGACGAAAGAGCAGTCAAAAGAGGATTTGCCGGTGGAGGTTGCGTTTCAGGTTGGCACTCCAAAGAAGTCTTCAAAGAAAAAGAAGAAAACCAAAGAAAGGCCAGAGATGAGAAAGTTAGAAAAACCTACAGACAAGGAGACAAATGGAAAAGTGAAGCAAGAAAAGGGGAAAAAAGAGAAAATAAATGAAAAAATCAAGCCTGAGAAGATGAAAGAGCCGATTAAGATTCAGCAGAGGCCAAAACAGCCTGAAATTGTGAAAAATGACCTAAGGCAAGGCAAGCCCCCGTCTACAAATGTGAGGCCCGACCCACCGAAAATAAGAATTCTAAAGACCGATACTCCTAGCATAAGTGCAACAACAACTATGACGCAATCGTCCCCAATGGAATCAGGGGGTAAGGGCTATCCAGGATTGCAGGAAGGGCATGAGGTGTTTAGCAGGCTGGCTGAATCAACCGAAAAGTTACTGCAAACTGTATTGTCTGAAACAGAGGTCATTAAATCGAATACTGAACAGATATCGAAAGATCTGAAGAGTGCTTTGGAGAAGTACAAAAAGGAGCCTACGCTATCTGATGCAGACTGGAAGAAAATAAACTATTTGCTGTCCTCACCAATGGCCAATGGCCACATGCAAGGCAAGGCACAGAAGCCTCTTATTGATACGCTAGACCTTGAGCGTCAAGTCGAGTCTGCAAAAAAAGAGGCTGAAATTTTGGAAGTCCGTTTAAATGACGTCATCAGGAAGAACATGGCTACCGAAGTAGAGAACAACGGAAAAAACAAATAA

Transcript

rna-XM_065194912.1

CTGGTAAccaatttacaaataaaatgcGCAGTAGATAACTGCGCTTGTCTTCTGAAAAGGATCCGCAGCAAGTGGAAGGAAAGCTGGCTTTTCTCGATTCTTCCTAATGCCCTGCAGCTGATTTTGGTATAGCAACTCCTTTTTAATTTCCATCTTTGAACATAACAACCTAGCAAACATGTCTGAATCTGATGAGTGCCCGCTTTGTATGGAAGTAATGGAAATTGATGATCTGAATTTCTTCCCATGTTCTTGTGGATATCAGATATGCAGGTTTTGTTGGCATAGGATACGAACTGATGAAAATGGGTTATGTCCTGCATGCAGAAAGCAATACTCTGAAGACCCTGCAATGTACCAACCACTTTCGAAAGATGAGAtccaaaagataaaaagagaaagaaaacagagaGAGGCTCAACggaagcaaaaaatatcagaaagtAGGAAGCATCTATCAAATGTCAGGGTtatacagaaaaatttattatttgttgttgGCTTGTCTCAGAGGCTGGCAGACATTGAGcttttgaagaaacatgaatactttggaaaatatgggaaaatcatgaaagttATTATAAATCCAAGTACAAATTATGCTGGTCCCCAAGGTCCAAGTGCCAGTGCATATATAACATATAGCAAAGAAGAGGAGAATTTGAAGGCCATATTAGCTGTAAATAATATCCAACAAGATGGCAGAACTTTGAGAGTATCACTAGgaacaacaaaatattgcaCCCACTTTCTACGAAATATGCAGTGTAAAAATCCAgATTGTATGTATTTGCACGAAATGGGGGATGATAATGCTTGTTTTACTAAAGAAGATATGCAGCAAGggAAGCACCTAGCCTATGAGAGAGATTTattagaaaactttcaaaaaacgCAGTTGATACGAAGGAAAAGCCAAGATATTGAGCAGGAGCCTCAACAATGTCAGCAAAAAGAAGAGTGGCCACAAGAAATTAATGAAGGAAATCAGAATTCGGCATTACCTGCCAGAGCTGCTTGGGCTGAAAAGGAATGCGAAAAGGACGCCaatgaacttgaaaaagaGCGGACAGAAGAAGATCCACAGTTAAGCTCATCTTGGTCTTCTGGTAGCGAATTTAAAGACAGACCAGAGATCGGCAATGATGAAcctaaaattgaaagaagtgaTTCATTTACAAGCAATAGCCCTGCAATACTTGGAAGTAGTTTACCGAAGGAGATCTTACACCCAACATTTGCAACCGgatGGGCCACGTCTGAGGAGACAAAAGAATTTAGCCAGACACCGAATGGCCCAGTTGAAGACCGCAGTGACTCATCATACATGTCTTCCTTTTGGCCAGTCAGCGATCTTGGATTGAAGAACCTACGAGTGACAAATGATGATGAATTAGGCTTCGATCCATTTGATGAATGCAACAAAGGCTTAGCAGACCTTTTGGCTTCTGAGAAACAAGCTGCACTTGGAAGCAACATCCAAGAAGTGAAACCAAATGCGAGTCGGGCAACATGGCCCGATTTAACGGCAGATACAAGCAAAGATATGTTTactcaaataaacaaagatgtTAGTCAACAATATTCGTTATTTGGAAATACATCACAAGGGCTGCATGGCAATTCGTTTTTTGGATCGTATTTCAATATGCAACAAAATCCAACAACTTCAGGACATCACCAATTGTTTGGACCTGAACACGGTTCCCCTTTCCAGCAAGCAAACAACTTCGGACAGAATGCACAACAACCTCAGAAGTCAAAGTCAAATGGTACAGATGTTTTGGCGTGGCAAGATGGACTTAGAGCTCTGCTGCCTAATGTGAATATTAGTTTCTCGGCGTCGAAGAGGCCTCCGCCCGGTTTTGATTCCTCGTCATCGCAGTTAGAGAGCTCTATTTGGACCAAAATCAATCAAAatgAAAAGCAAAACACATCGCCATCAGGAATTCAACCACATCCTTTTCCAACGCAGGCAAATGTTAAGCCCGGGTCGGTGAATGTCCCGGCTCCGGATCAAATGCCACACCCGGTCACCCCATGGAATGCCATTGTAGGTAGAGCCCATGCTAGTACAGGCCCTTTGCAGGAAAGCCTTTCAAGTCAAGGTGTGGAAGTGAAGACCACTGTAAAGCCAGTGACTGCATTTGCGAAAGGGAACCCaatgaaaagtcaaaaacCCACTGCAAAAGTGAAGCCTCAAATGAAATGTGTGGTCTCACCAACCGTGGAGGCACAGCCAATCATCCAGCAAGCAGCGGACGGCCGCCCATCGTCTTTGTCACGCATGAACGATCTCGATGATATCAGCTTGACAGATCCCTTGCCCCTCCCTATAAACAGTGGTGCAGGAACCACAGGTAATGTGACGAAAGAGCAGTCAAAAGAGGATTTGCCGGTGGAGGTTGCGTTTCAGGTTGGCACTCCAAAGAAgtcttcaaagaaaaagaagaaaaccaaagaaagGCCAGAGATGAGAAAGTTAGAAAAACCTACAGACAAGGAGACAAATGGAAAAGTGAAGCAAGAAAAGgggaaaaaagagaaaataaatgaaaaaatcaagccTGAGAAGATGAAAGAGCCGATTAAGATTCAGCAGAGGCCAAAACAGCctgaaattgtgaaaaatgaccTAAGGCAAGGCAAGCCCCCGTCTACAAATGTGAGGCCCGACCCACCGAAAATAAGAATTCTAAAGACCGATACTCCTAGCATAAGTGCAACAACAACTATGACGCAATCGTCCCCAATGGAATCAGGGGGTAAGGGCTATCCAGGATTGCAGGAAGGGCATGAGGTGTTTAGCAGGCTGGCTGAATCAACCGAAAAGTTACTGCAAACTGTATTGTCTGAAACAGAGGTCATTAAATCGAATACTGAACAGATATCGAAAGATCTGAAGAGTGCTTTGGAGAAGTACAAAAAGGAGCCTACGCTATCTGATGCAGACTGGAAGAAAATAAACTATTTGCTGTCCTCACCAATGGCCAATGGCCACATGCAAGGCAAGGCACAGAAGCCTCTTATTGATACGCTAGACCTTGAGCGTCAAGTCGAGTCTGCAAAAAAAGAGGCTGAAATTTTGGAAGTCCGtttaaatgacgtcatcaggAAGAACATGGCTACCGAAGTAGAGAACAAcggaaaaaacaaataagatcTAGTGTTTTTAGAACTTTGACGAAAGAGGGAAATGCTTAGATTGCTGTGCGAAAATGGATTGCTTTATTGTACTGCCGCTGCTAAGATATTGACTTAACATTCAgacttttttgtaattgatgTTACCATagaattgctttgaaaagaattgatAAGTGTTTGAACTGTGAAATGTGCCAGTGAATgtgttaaaagaaataataaattta

Protein

Pfam domain

Pfam accession	Pfam name	Description	Type	Source
PF14570 all species →	zf-RING_4	RING/Ubox like zinc-binding domain	Domain	Interproscan

InterPro

InterPro term	Type	Description	Source
IPR039780 all species →	Family	CCR4-NOT transcription complex subunit 4	Interproscan
IPR003954 all species →	Domain	RNA recognition motif domain, eukaryote	Interproscan
IPR000571 all species →	Domain	Zinc finger, CCCH-type	Interproscan
IPR039515 all species →	Domain	NOT4, modified RING finger, HC subclass (C4C4-type)	Interproscan
IPR001841 all species →	Domain	Zinc finger, RING-type	Interproscan
IPR013083 all species →	Homologous_superfamily	Zinc finger, RING/FYVE/PHD-type	Interproscan
IPR000504 all species →	Domain	RNA recognition motif domain	Interproscan
IPR035979 all species →	Homologous_superfamily	RNA-binding domain superfamily	Interproscan
IPR012677 all species →	Homologous_superfamily	Nucleotide-binding alpha-beta plait domain superfamily	Interproscan
IPR034261 all species →	Domain	CNOT4, RNA recognition motif	Interproscan

PANTHER

PANTHER term	Description	Source
PTHR12603 all species →	CCR4-NOT TRANSCRIPTION COMPLEX RELATED	Interproscan

Gene Ontology

GO term	Category	Description	Source
GO:0004842 all species →	Molecular Function	ubiquitin-protein transferase activity	Interproscan
GO:0016567 all species →	Biological Process	protein ubiquitination	Interproscan
GO:0030014 all species →	Cellular Component	CCR4-NOT complex	Interproscan
GO:0003676 all species →	Molecular Function	nucleic acid binding	Interproscan
GO:0046872 all species →	Molecular Function	metal ion binding	Interproscan
GO:0003723 all species →	Molecular Function	RNA binding	Interproscan

Search by domain instead of by gene. Any accession above (InterPro, Pfam, PANTHER, GO, KEGG) can be used as a query on the Functional Domain Search page, which searches all 148 annotated genomes at once.

KEGG pathway

KO	Enzyme	Enzyme ID	Pathway	Map ID	Source
K10643	CNOT4, NOT4, MOT2; CCR4-NOT transcription complex subunit 4	EC:2.3.2.27	Ubiquitin system	ko04121	deepkoala

Searching by KO or pathway ID across all species is available on the KEGG Pathway page.