Gene detail

Detailed information of XP_065051229.1 in Rhopilema esculentum

Genomic Location: ScUbCFx_1658:5698010...5709114
NR annotation: no NCBI-NR hit recorded
Species Rhopilema esculentum · all data for this species · gene families

Gene Structure

More details in JBrowse

Sequence

CDS

LOC135680920

ATGGAACTTCGTCATTTCATCAAGTATACACCCCCACCAGCCCACCCATCAGATTGTGAGTCTTGTCCTAGTGATCTGAATGATGAGATTCTGGAATGGAAAGAGCGGATGAAATATATTCATGAGGACATGGACTGGCTGTTAAGGCTTGGTACTGAAGAGTTTTGGAAACAGATTACACAAGATGAAACTTTCAGCCATAGCTATGATTCTTTTTGGCAATGCTGTCCAAGGCCATATGATTTGCAAGATGTTCCAAGCCAATGTTTAAGGATTCAAGATGAAATCAGGAAACTATCCTTGCTACTTTTCCTAAGAATCTGTGATAGTACAAGTCTTGATGGAAAGGCAAATATTTCCCATGCTTCCTTGTTATACGATAACTTTCTCCTGGATGTTCCAAAAGTCATAGATATTTGCAGCATTTACAACAATGTTAGTGTTGATACCAAGCATCTTATATCAAATGCTCTTGAAGCAGCTTTTAAAAAACAGCAAGGCTATTGGAATGATTTAGATGTTGCCATTGACACGATCTTCCATACATTTGAAAGCATTGCAGAGAGATTTACTCTTCTTGATGATGACGATGATCACCTGCCGAAACAGATCTCTACTCAAGGAAAAACAGGGTATTCATCCGATGACGTCATAGATGTAATCGTGTACTTGTACGACACGGCTAATGCACTTTGGTCTCTTGTTTCCATGTGTCCCTTTACATGCCCTATACTTCTTGACAAAGGATCTTTAAAAAGGATTTCAACAATAGTCGACAAGTTTCTTCCACGCCTAAAAGAACTTTATGGCAAAAGGCTGAGTGAAGACCAGAGAAAATATTTTCACAGGACGAAGAGGCAACTGCTTCAGTTTAGCCACAAAATTCTGAGCGAATGCTTTTTCAGCCGTGCTTCAGCATTTTCAACAGACAAAAAGCTCCTTGAAGATCTTCTTAGCACTCTTTCGCATCTTTTGTCTGATACAAGGTTTATTGTCAATTATGAAAAGTATTTCAAACTCAGTGATGAGCTTAGCAAAATTGAGATGAAATCAGATGGTGATCATGTTGAAAATATTGTTTATATAAAGCAAATCATACAGAGTATGGTGCCGCAGACACTACCTGAGAGCAAGGAGGAAGTGCAAGAGGTGGAGGCTGGTGCAGTTGCCGCTGTACCAGAAGACAAAATCGAAGAGTTAATCACTCAGTTGAAAAGCATGTTTCCTAACGAGAAGAATGCGTTTCTGCGAGCCGCCATTATTCACTTTGATGGCAACCCGGAAAAGGTTGTCAATAATATCATCGAAAACAACTTCCCACCATATTTGGAGGAAATACGACATGAAGAATCTGCTCCAATGAAGCCACAACTGAAGGAAAAAGAGACAGACGGTGCATTGCCAGGCCAATATTATTTGAAAAGTGACGTTTTGAAGAAATCAGAGATTGATGAAATATTCACAAATACTGCAACCTCTAAAGATTTTCTCAAGCATCTGAAATCATCGGACGGGGGTTCGGCTGCATATGATTCAGCTTATGACGATTTCGCCTATGACGAATATAACGATGAATATGACGATACCTACGATTCTCATAATGTCGGTGTAATGGATGCTGATTCGGGCGATGAGCTAAGGGATGTTACTACGCGAAGAACATTCGTTAAGCCCAAAGTCCTGCGAGCTCTAGAGAAGCCATCAGCATCAGACGAAGAGCAGGAAGGTAGCAGTAGTGAGGAGGAGGACAACCAAGATCAGAATGAACAAGGACTTTTCGAATCTGGATGGAATGCATCAAATCGGGGGTATGGTCGTGGAAATGCTTCATGGAGAGGGAGAGGATATGACAGAAGACAGCGTTATAACGAAGGAGCTAGAAATGACACTGAAAGAAATCGAAGGGGAGCTCCACGTGGTGAAAATGAAAGAGGAAGACCATCAAATAGAGGGCACAGAGGTGGACCATCTCGCCCTCCTAGAGGTGGACAGTCACACCCCGCTAGAGGTAGGGGAGGAAAGAAAAACAATCATAAATCTTTGGCTTTGAAGAAATCTGCTAGAGGAATGGCAGGAATTTAG

Transcript

rna-XM_065195157.1

cggcgcttctatatcattggtTCCTCTGAACTCTCTGGCCTAGGCGATACAGATGTGCAGGTTTTGAAtagttatttgaaaacattactGCAGGCTTTCGAGTGGGAGTGTTGGTTatacttcattttttattatatgtAACTAAGACCATCTACGATCAATTGTGCACAGTATAAACCAACCAAACCAACACTTAAAGTGTGACCAATCGCCAACAAACTTACAAAAAGAACCATGGAACTTCGTCATTTCATCAAGTATACACCCCCACCAGCCCACCCATCAGATTGTGAGTCTTGTCCTAGTGATCTGAATGATGAGATTCTGGAATGGAAAGAGCGGATGAAATATATTCATGAGGACATGGACTGGCTGTTAAGGCTTGGTACTGAAGAGTTTTGGAAACAgATTACACAAGATGAAACTTTCAGCCATAGCTATGATTCTTTTTGGCAATGCTGTCCAAGGCCATATGATTTGCAAGATGTTCCAAGCCAATGTTTAAGGATTCAAGATGAAATCAGGAAACTATCCTTGCTACTTTTCCTAAGAATCTGTGATAGTACAAGTCTTGATGGAAAGGCAAATATTTCCCATGCTTCCTTGTTATACGATAACTTTCTCCTGGATGTTCCAAAAGTCATAGATATTTGCAGCATTTACAACAATGTTAGTGTTGATACCAAGCATCTTATATCAAATGCTCTTGAAgcagcttttaaaaaacagcaagGCTATTGGAATGATTTAGATGTTGCCATTGACACGATCTTCCATACATTTGAAAGCATTGCAGAGAGATTTACTCTTcttgatgatgacgatgatcACCTGCCGAAACAGATCTCTACTCAAGGAAAAACAGGGTATTCATCCGATGACGTCATAGATGTAATCGTGTACTTGTACGACACGGCTAATGCACTTTGGTCTCTTGTTTCCATGTGTCCCTTTACATGCCCTATACTTCTTGACAAAGGATCTTTAAAAAGGATTTCAACAATAGTCGACAAGTTTCTTCCACGCCTAAAAGAACTTTATGGCAAAAGGCTGAGTGAAgaccagagaaaatattttcacaggACGAAGAGGCAACTGCTTCAGTTTAGCCACAAAATTCTGAGCGAATGCTTTTTCAGCCGTGCTTCAGCATTTTCAACAGACAAAAAGCTCCTTGAAGATCTTCTTAGCACTCTTTCGCATCTTTTGTCTGATACAAGgTTTATTGTCAATTatgaaaagtatttcaaaCTCAGTGATGAGCTTAGCAAAATTGAGATGAAATCAGATGGTGATcatgttgaaaatattgtttatataaagCAAATCATACAGAGTATGGTGCCGCAGACACTACCTGAGAGCAAGGAGGAAGTGCAAGAGGTGGAGgctGGTGCAGTTGCCGCTGTACCAGAAGACAAAATCGAAGAGTTAATCACTCAGTTGAAAAGCATGTTTCCTAACGAGAAGAATGCGTTTCTGCGAGCCGCCATTATTCACTTTGATGGCAACCCGGAAAAGGTTGTCAATAATATCATCGAAAACAACTTCCCACCATATTTGGAGGAAATACGACATGAAGAATCTGCTCCAATGAAGCCACAACTGAAGGAAAAAGAGACAGACGGTGCATTGCCAGGccaatattatttgaaaagtgaCGTTTTGAAGAAATCAGAGATTGATGAAATATTCACAAATACTGCAACCTCTAAAGATTTTCTCAAGCATCTGAAATCATCGGACGGGGGTTCGGCTGCATATGATTCAGCTTATGACGATTTCGCCTATGACGAATATAACGATGAATATGACGATACCTACGATTCTCATAATGTCGGTGTAATGGATGCTGATTCGGGCGATGAGCTAAGGGATGTTACTACGCGAAGaaCATTCGTTAAGCCCAAAGTCCTGCGAGCTCTAGAGAAGCCATCAGCATCAGACGAAGAGCAGGAAGGTAGCAGTAGTGAGGAGGAGGACAACCAAGATCagAATGAACAAGGACTTTTCGAATCTGGATGGAATGCATCAAATCGGGGGTATGGTCGTGGAAATGCTTCATGGAGAGGGAGAGGATATGACAGAAGACAGCGTTATAACGAAGGAGCTAGAAATGACACTGAAAGAAATCGAAGGGGAGCTCCACGTGGTGAAAATGAAAGAGGAAGACCATCAAATAGAGGGCACAGAGGTGGACCATCTCGCCCTCCTAGAGGTGGACAGTCACACCCCGCTAGAGGTAGGggaggaaagaaaaacaatcataaatCTTTGGCTTTGAAGAAATCTGCTAGAGGAATGGCAGGAATTTAGcaatttatgttttataatttgaaattagaaGAACTTTAAGTATCAATGCATATCTGACTGTTCGCCGGTCACTGTTTTCGTTTCATTTGAATcgatttttgagcaaatatAGGGTAGGCAGGCTGTGCTATAGCACATTCAATGCCTGCCCAACTTCTGTCAGTAATTACTGATTGCTAGAAGAAATTCATTacttatttttgaatgaaaatcaaatgtcCTAAAACAA

Protein

Pfam domain

Pfam accession	Pfam name	Description	Type	Source
PF02845 all species →	CUE	CUE domain	Domain	Interproscan

InterPro

InterPro term	Type	Description	Source
IPR003892 all species →	Domain	Ubiquitin system component CUE	Interproscan
IPR052586 all species →	Family	Activating signal cointegrator 1 complex subunit 2	Interproscan
IPR009060 all species →	Homologous_superfamily	UBA-like superfamily	Interproscan

PANTHER

PANTHER term	Description	Source
PTHR21494 all species →	ACTIVATING SIGNAL COINTEGRATOR 1 COMPLEX SUBUNIT 2 ASC-1 COMPLEX SUBUNIT P100	Interproscan

Gene Ontology

GO term	Category	Description	Source
GO:0043130 all species →	Molecular Function	ubiquitin binding	Interproscan
GO:0006355 all species →	Biological Process	regulation of DNA-templated transcription	Interproscan
GO:0005515 all species →	Molecular Function	protein binding	Interproscan

Search by domain instead of by gene. Any accession above (InterPro, Pfam, PANTHER, GO, KEGG) can be used as a query on the Functional Domain Search page, which searches all 148 annotated genomes at once.

KEGG pathway

KO	Enzyme	Enzyme ID	Pathway	Map ID	Source
K18667	ASCC2; activating signal cointegrator complex subunit 2	-	Transcription	-	deepkoala

Searching by KO or pathway ID across all species is available on the KEGG Pathway page.