Gene detail

Detailed information of XP_065051233.1 in Rhopilema esculentum

Genomic Location: ScUbCFx_1658:5727336...5731277
NR annotation: no NCBI-NR hit recorded
Species Rhopilema esculentum · all data for this species · gene families

Gene Structure

More details in JBrowse

Sequence

CDS

Transcript

rna-XM_065195161.1

AATTTTCAATCGACTTCACTTACATTCTAACTGGCCATGATTAATCTAGTCAATATCTGAGCCTACCGCCATGGCCGTGTCCACAACCTACTCTGAGCCGCTCCCATTGCAAGCCAAATATGTATGGACTTTAATAGAATTGGCTCCAGATCTTTAGCTAGCCTCACTACTGAACCAATGTAAATTTTCGCTCAACCTTGTGATCTAGTGGATTACGTCTGGCTAAACATTCTCACACTCTTAACAGAAAGAAGGGCATGCCAGTTAAATAATTAGCGTTTGTTTAAAAGAACGTCTTGGTTCCTGAGTCAACGAGTTCGAGCAAACATAAAAGCTCACCAGACAGAAGTCGCAAAGGGTCCGAAGAAATAAAGAAGGGCACGATAAGATATGAAATACATTGAATGGAGTTTGGAGGACAGCGGGGATTTCGAATGTGGTGGCCTCTGTGgtaaaaagtaaataattttgaagtgCTCTCTGAACCACTAGCACAGTTACCGCGAAACTAAAGCATGACGATCCTTTGAGACACTGTGATTTTCATCTTTACAGACAATCAAAGGGATTTAACCAGATAAAATGATTATGTTAACTTGCCACTGACTTCGCCCAGTGGACTCTTGCGGTTACCTGCAGGTATTTCATATGTCACCAGCTTGAATAGTAAACGGTGTGTTTCGCCTAGATTGTGTCGAGTCTTTTGAAACACCAACCATAAAGGACATGCTGCTACTTGTGTTAAGTATATAAACGAGTCGTAACAACTCGCGAGGTTAACTGTCCTGTCCTTTGCCCGTCAACGTTGAGCCACGAGCGAGGTATGATGGAGTCTCTCACCACAATGAAACTGATAATCAGCATTCTGGTTTTTAGTCACTTGCGCATATCGTTTGCAGCACAAAGACCGTCAATGGACGAGAAAAAGCAGAGGCTTATTCAATTAATTGGAAATTCGGTGGCCATGAATTTAAGCTCTCAAGTCAAGACGAACGGTGTTGCAAGCCCAGTATCGCTGCCTCCATGGGCGGCTGATGAAGCCTTTTTTGAGTTGCATGAGAATAAATCGTCCTTAGCAATTTTTATCGATTTGATGTGTTTTGCCAGCTTACAGTGGACTGTCAGTTATCTTGATTACAGCGACATTATGCAGAACAATTGGAAAAGAGTTGAGATCGATATgccaagaaacaaaaaaggacCTAAAACATTCTTACATGTGAAAAATTTCGACTCCAACAACGTGGCTGTTGCCTTAGCCGTCTACGAAACAAAGGACTCTCAACTTTTTACACTGCATGAAGCACCTAaaggattttacaaaatagagATGCGATCCACGACAAGCTTTACGCAGGTCGTTGGAGTTTCGGTGCTGGTGGGTGGCAGCTTAGAATTAGGAATGCCCCAACTGCCACCTGACAAAATATTATCGGTGGCACATTTAGCGAATGGCTATGTTAACTTGTATTGGGAACCTGCAAAAATGACGGAAAAAGAGAGTGAAAACACCAAAGCGAATATCGACTATTGTGTCTCTGTTAACACGAAAAGAAACTTTGATCGTCTTTGCCAAGCCCAAGacttgatgaaaaaaaacCCATCAGACatgattatattttattgtgttCGTGGTCGAAACCAGTTTAATCTACGAAAGCACTTAAGTAGCGATGTGAACTATCACGTGAACGTATTTGCTGTCAATCCGCATTCGAATCGAAGCCGAGCATACGCTGGATTAACGCTACCTAAGCACAGATCTTCGCTTACAAGTCGCCTTAGGCAGGATTCAACGCTTAATCTTAAAATCGATCTGAAAACAGGCTACCATGTGGTTCAATTCGAGGTGGCAAGGCAGGGTACGACGCGTCTTACTGTCATCGCTTGTGAAGGACCAGTTCTTGTTACTATCACTCATGAATCAAGAGTCTTGAGGAAATACCAAGCCTACGGTGTAAAGACCAACACAATCAAAGCTGCTCCAGTGGGAACCTATTTTGTGAcactaaacaaaaaaatagaCGGGGAACTAAACCTAAGAATCCACTTGTCTTCCAGCAAACGTTGGGGGCCTTTCCCAAGACTGCCAAAAGGCAGAGGTGTCAAAGAATGGCCAATGCTACGCACATGCACAAGTGTCACTATTGCCTGGTTAGCAGCAAAAGGAAAGCAACAGTTTTGTCTGTATATTGGACGATTTAGCACGAAAATATACAAGAAATTAGGCAACGTCTGCTTTAAACCAATGTCTGATTCTGGGGTTCGTAGGATCATCTGTATCAATAAGCGCATTCGCAAAAATCACAAGGCCATTTTCACAAGAACAATTAAAGGCTTGAGGCCTTGTACATCCTACGTGTTCTATATCCAAGTCAAAAGGAGAAGGTCGACGGACACGCTGATTTACAGACCATTGACACTACGGACCAGGTGCAAAAGATGCCTTATGGATGCCTAGAAGCAGTATTTCTGATTCCTAGAAGCAGTATTTCTGATTCCTAGATGAAGTATTTGTGATGCCTAGAGGACGCATTTCTGATGCCAAGAGCTTGTACAGATTTCGAGCCCTGAAGAGCACAAAGTAATGGGATCGAATTTTGTAACAACgtataaattatttataattcaAGTTGATTTTATTCACAATGAATATGAACTGCAAATCAATGCAAGTCTTAAAAGTGTGTGATTTcgtttttagaaattttcatgcttaAGAAGAGAATTCTTAAtttgtcttcttctttttcttgtccaacattttttgcacaaCTTGTATTTCTTCTAAGTATGACGTTTTAAATTAGAAGTTTACAGTTGATAtatatcttattttttcatggtCTTTTCTAACCAATTTCTTGCCATTTTAGTAACCAAAATTCAGGCAGCAAATACTTCATTTTCATACGAGAGAGCTGCCATTATCGGGTGTTGCTGCACCCAGAGATAGCAACACATATGTCAGTTTTGGTGACATCAACAATTTCAAGTTTCATGCATTCAATTCCGGTcatagaaaatataattttcttaaaattctgcttaaaatcattttctctGGGTGTAAAGTAAATCTCTCGATAGAGTTCTAAAGAATAAAACCTATGCAATTActtttttctgtcaaattctagaaaaaagatttatcCCCTTCATTTCAATTGAAGTCACACCTTGCCTAAGGGGTTTTAAATAGACTTAAAGATTTAGAAAAGCTTATGACAATAACATCCTacacagaaatttttttattgcacTTGTTTCCGGATGACCAATAGTTATattatatatgaaaatttcaaagaatcaaTTTTAACGAACAGCAGTTTAAAGAAAGGTTAAAAACTTGATGAAGACATAGTCAGTGATGATTTTAAACGCTGAAACGCAGCAAAAtatgtgaaatgtttttaggGTTATAAAGGCGAGGCATTTTTTCACGGGGAATAGCAGGTGAATATGGCAGGGGCAGAAAAATCTGTCTTGAACTGGCACGGGGTGGAATATCATGCAGAAGAGGAAACTTAAGACAGACTGAGGGTAGAAAACCCCAGCTTGCAAAGGAAGCGGGGAAATGGAAAATTACCTGGATCACTTGACTTTTCGAGCGGGGACTCTAAGGTCGAGAAATTTATCGCCGGGGTGCATTTCACCGGGCTTGTTACACAGATACTAAATAGAATAGGCGTGACCTGCATAAAACTGGGTAGCAAAAAGGCTTGAAAAGACTTTGGGAAACAATGAACAAGAAGATCAGCCCGCCAGACAAGAAGGTGACGTTTTCGTGGTATTTTATTGACCAAATCTACTTTGGTTTTACACCCAtccttaaatattttaaacggCTTGAAATTCATCACAGTCAAAAGGTCACAATTTGGTCAATCAGATAATCAGAAAATGACATGGCTTTTGTGAATGATTTTATCATTGACT

Protein

Pfam domain

Pfam accession	Pfam name	Description	Type	Source
PF19433 all species →	NDNF_C	Neuron-derived Neurotrophic Factor C-terminal	Domain	Interproscan

InterPro

InterPro term	Type	Description	Source
IPR019326 all species →	Family	Protein NDNF	Interproscan
IPR045805 all species →	Domain	Protein NDNF, C-terminal	Interproscan

PANTHER

PANTHER term	Description	Source
PTHR14619 all species →	NEURON-DERIVED NEUROTROPHIC FACTOR	Interproscan

Gene Ontology

No Gene Ontology signature was detected for XP_065051233.1. This gene does have a gene model — the search simply returned no hit.

Search by domain instead of by gene. Any accession above (InterPro, Pfam, PANTHER, GO, KEGG) can be used as a query on the Functional Domain Search page, which searches all 148 annotated genomes at once.

KEGG pathway

KO	Enzyme	Enzyme ID	Pathway	Map ID	Source
K25687	NDNF; protein NDNF	-	Signaling proteins	-	deepkoala

Searching by KO or pathway ID across all species is available on the KEGG Pathway page.