Gene detail

Detailed information of XP_065051386.1 in Rhopilema esculentum

Genomic Location: ScUbCFx_1658:7544614...7566887
NR annotation: no NCBI-NR hit recorded
Species Rhopilema esculentum · all data for this species · gene families

Gene Structure

More details in JBrowse

Sequence

CDS

LOC135681046

ATGAGCAATACTAGTGATGCTTCTGAAGAGTGGATGAAAAAGACTACTCTTGGAAGAGGGACATTTGGTCATGTAACATTATGGGAACATAAAGTAACTCATGAAGTGCTAGCAATTAAAGAGTGCAGTGTCCAGCTAGATCCAAAGAATAGCCAAAGATGGAGGAAAGAAATTGATATGCTTTCAGAAAAAAAACATCCAAATTTAGTTGGTTTCAGAGAAATTCCTCCATCTTTGTCCAGACTACTGAAGACTACAGAACCATGCTTGGGAATGGAACACTGTGAAGGAGGGGATCTTAGAAAGGTCCTTAGTCGTCCTGCCAACTTCACTGGGCTTAGTGAGTTTGCTGTTTTAAATATCCTAAGAGATGTTTCCAACGCGGTCCAATTCCTGCATTCACACAAAATAATCCACAGAGACCTGAAACCTGAGAATATTCTAATAAGTTTCATTGGGATAAAGATTGTTTACAAGATTACAGATCTTGGTTATGCAAAAGATTTGAATCAAAACAGCGTCGCAGATTCGTTTGTAGGAACAATGAAATACGTGGCACCTGAAGTTTTTACGTCAAAACCGCCAGAAGGATACACATTTACTGCAGACTTTTGGAGTTTGGGGAATGTTTTGTTTGAGTGTATAACAGGATACAGACCTTTTGATTTTGAAATGAGTTTTGTCACATGGCGTGAAAAAGTTGCAATGAAAAGTTCAAACGACATTTGTGGCACAGAAGAATCAGGTGAAGTGCAATTTCATTCAAAGATTCCACGGCCCTATAAATTATCAAGCCCTCTGATTCCATTATTTGAAGAATGGCTACGGCTAGTTATGGAATGGGACCCAAAGACCCGGGGTGGCCAAAAGGATGATAATGGTATTCGAATGTGCTACCACGTGGCAAAGAAAATCCAAAACACAAAGATTCTTCATGTTTTTTCTGTAAATAGATGCCAGCTTTTTTCATTCAAAATGGAAGAAAGCGACACGGTTGGTGATTTGGAAGACAAGCTAAATATTGAATTTTGTATGGATCCTGAGGAAACTACATTACTTCTTGCTGACGGAAAGATCTTGCATTCTGATGGATTATTATTAGAGTGTTACAATCAGCCCGGCGACAGTGAATGGTTGGTCTACGCTGTCAACATACCCCAAGTCTTGCAAGCCAAAAACAGTCGCTCTAAATCGCTGCTTGGCAATCGTCATGGTTATCAGCAACTACCTAAAGAAGTCAGACTTCTCGTTGAACAGCCTGATACGCCGAAGTCGCCTACAGAGTTCAAAAGACTTTGGGGACACGCGTTGTATTTTATTAGTGAACTTGCAAAGAGCTATCGACGGCTGCTACAGGCCCAACGAGCAGTCATGATTACGCTGATGAGCTGCAATTCCAACTTGATGCTCCTCAAGGACGAGATGACTGCTGAGGCATACAAACTTCATGCAAATTTAGAAATGTTTATACAGAGCTGTGAACATGACTTGAAGTTATTTTACGAAATTGGGTTTAACCGAAATTCATCCAACAAGTATTACTCGGAAGAGCTGAAGAAAATGATTGACATAGCAAAAGCGTACCAAGAGGATATTGCTCAAGACATCAGTTCACGGATAACCAGTGCACAGAGGGAGCTCATCAGCCTGAAGAACAACTCTCTCATCGCGAACCAAGACACAAAGCTTGACAAAATATCAAAATTGGCCGAAAGCCACCTGGACCAACTTCTGAAATACGATCATTCCGTACAAGAAAAGATGCATAGCGAATATTTGGCTAATTTGGTTCATCAAATCCCGACTATATGGGATCCACTGGAATCAAGTTTTTATGAACAACTAAGGAAAGTACTCAGTTGTAAACAAAACATGGAAAAACTGGTTCCAGAGTTGAAAAGTGTTATAGATACACTACGAGGACATAGGGAGAAGCTCAACAAGATGATGAAACAAAAACAAGATTTAACTTGGAAGACTTTAATCAGCCCTGCGGAAAATACATCTCCGTATTCTTCTGGTTTTGATTCTGTCACCAACGCCCTTACCTCGATCATCGAGGATACCCAAAAAGAATCGGTAGATCCGGTATCGCTAATAGCGGAAAACGAAGGTGAACTCGAGAGACTTGGCGAGTTGCTTAAAGACTTTAAACAAGCCACACATACGAAAAAAGAGAATGAAAAATGA

Transcript

rna-XM_065195314.1

GGTTGCCTGTTTTGTGTCATtcccttgaaaattttcattttgtgctTTTCATTAAATCTTCACAAAAATGCCTCTCAATAGacaatttcagattttgaattttgatatcGTTCTGTCCATATTCCTAAGAAATTTCAGACGGGAAgtaaacttcaatttttctgcaaatattgTGAAGAAATTAcgtcattttctatttttgattAGAATACGGGAAGTGTAATCTGGGCACTAGTTTCCTAACTGGAATTATGGTAATTTGAAATGGCGGATTGTTTGTTGTATCATTTTTGcgaattttggaattttcgGTGATGATGTCACACCAGTCTTTGTAATTTAGTTTTGGCTTTGATTCAGACCTACCACGTGAATGGGCTATTGATGCTGACAGACTAAAGTTGTAGTGTAAGTCGAATTACACTGTAGGCCCTCTGCTGCCCATACACGAGGCCACAAATCTCGTCGGGAAAAGTGTTTTAATATCAGTCATTTTGAGCTCGATGCAGGGCTCGATGGCATTTGGAAAGCAGGGAGTAAATCAATAAACAGATCCATAGCAATTGTGATTTTATGTTGAATTCTAGAGATTGCAGCACTGCACGTGCAAGATCTTTTTCCAGTGTCGGATTGCTGTGGTGGCCTAAGGCCGGCTACATCTGTGGACTGCAAATATTTATCACTCTACAAGATGAGCAATACTAGTGATGCTTCTGAAGAGTGGATGAAAAAGACTACTCTTGGAAGAGGGACATTTGGTCATGTAACATTATGGGAACATAAAGTAACTCATGAAGTGCTAGCAATTAAAGAGTGCAGTGTCCAGCTAGATCCAAAGAATAGCCAAAGATGGaggaaagaaattgatatgctttcagaaaaaaaacatccaaatttAGTTGGTTTCAGAGAAATTCCTCCATCTTTGTCCAGACTACTGAAGACTACAGAACCATGCTTGGGAATGGAACACTGTGAAGGAGGGGATCTTAGAAAGGTCCTTAGTCGTCCTGCCAACTTCACTGGGCTTAGTGAGTTTGCTGTTTTAAATATCCTAAGAGATGTTTCCAACGCGGTCCAATTCCTGCATTCACACAAAATAATCCACAGAGACCTGAAACCTGAGAATATTCTAATAAGTTTCATTGGGATAAAGATTGTTTACAAGATTACAGATCTTGGTTATGCAAAAGATTTGAATCAAAACAGCGTCGCAGATTCGTTTGTAGGAACAATGAAATACGTGGCACCTGAAGTTTTTACGTCAAAACCGCCAGAAGGATACACATTTACTGCAGACTTTTGGAGTTTGGGGAATGTTTTGTTTGAGTGTATAACAGGATACAGaccttttgattttgaaatgagttTTGTCACATGGCGTGAAAAAGTTGCAATGAAAAGTTCAAACGACATTTGTGGCACAGAAGAATCAGGTGAAGTGCAATTTCATTCAAAGATTCCACGGCCCTATAAATTATCAAGccCTCTGATTCCATTATTTGAAGAATGGCTACGGCTAGTTATGGAATGGGACCCAAAGACCCGGGGTGGCCAAAAGGATGATAATGGTATTCGAATGTGCTACCACGTGGCaaagaaaatccaaaacaCAAAGattcttcatgttttttctgtaaatagaTGCCagcttttttcattcaaaatggAAGAAAGCGACACGGTTGGTGATTTGGAAGACAAgctaaatattgaattttgtatgGATCCTGAGGAAACTACATTACTTCTTGCTGACGGAAAGATCTTGCATTCTGATGGATTATTATTAGAGTGTTACAATCAGCCCGGCGACAGTGAATGGTTGGTCTACGCTGTCAACATACCCCAAGTCTTGCAAGCCAAAAACAGTCGCTCTAAATCGCTGCTTGGCAATCGTCATGGTTATCAGCAACTACCTAAAGAAGTCAGACTTCTCGTTGAACAGCCTGATACGCCGAAGTCGCCTACAGAGTTCAAAAGACTTTGGGGACACGCGTTGTATTTTATTAGTGAACTTGCAAAGAGCTATCGACGGCTGCTACAGGCCCAACGAGCAGTCATGATTACGCTGATGAGCTGCAATTCCAACTTGATGCTCCTCAAGGACGAGATGACTGCTGAGGCATACAAACTTCATGcaaatttagaaatgtttaTACAGAGCTGTGAACATGACTTGAAGTTATTTTACGAAATTGGGTTTAACCGAAATTCATCCAACAAGTATTACTCGGAAGAgctgaagaaaatgattgacaTAGCAAAAGCGTACCAAGAGGATATTGCTCAAGACATCAGTTCACGGATAACCAGTGCACAGAGGGAGCTCATCAGCCTGAAGAACAACTCTCTCATCGCGAACCAAGACACAAAGCTTGACAAAATATCAAAATTGGCCGAAAGCCACCTGGACCAACTTCTGAAATACGATCATTCCGTACAAGAAAAGATGCATAGCGAATATTTGGCTAATTTGGTTCATCAAATCCCGACTATATGGGATCCACTGGAATCAAGTTTTTATGAACAACTAAGGAAAGTACTCAGTTGTAaacaaaacatggaaaaaCTGGTTCCAGAGTTGAAAAGTGTTATAGATACACTACGAGGACATAGGGAGAAGCTCAACAAGatgatgaaacaaaaacaagatttaaCTTGGAAGACTTTAATCAGCCCTGCGgaAAATACATCTCCGTATTCTTCTGGTTTTGATTCTGTCACCAACGCCCTTACCTCGATCATCGAGGATACCCAAAAAGAATCGGTAGATCCGGTATCGCTAATAGCGGAAAACGAAGGTGAACTCGAGAGACTTGGCGAGTTGCTTAAAGACTTTAAACAAGCCACACATACgaaaaaagagaatgaaaaatgaagttGAGAAAGTTGAAACAAAGCAAGGTAGACGTTGGTAGGAAGCCTTGTCCACTCTAGCAAGACGGAAGCTTCACTCAAGAAAAGAGAATGATTTACGAATAAATGAGATCCCGAAATTGAGGCAGGTTGCTAATGATTCGCCGCGAAGCAGCACACTGCTCCTAGAAAAGATGAACGGAAAGGGAAGTGCTTCCTTCAAAATATGGATATTgctaaattgaaattttactaATTGGAGATCGAATATTGTAATTTTGGCTCATAACATAGCTTGCATGAAATGCTCATTGCTTGTGATACCTGGCAGATACCAGTAAAATATAAACCTGGTTGCTATGAATACGTAGTGGCGTAGTAGTTTTCAGTCTTGGTTGCTCATTAAATTTCAGATCGAATCTAGAAGGACACATGATAAAGGTAATGGAGATCTTTCTTGTACATACTGTACGTCGTTTTGCTGAACCAGGACTCGAAAATTCGTGCTACACAACTTTGAATAATTTCCTGATCGAGGCTGGTTATTGAAATCGTGTATTCGAGGCAGGTATCCCTAAATATCCCCAATTTTATTATTcgatttttattttcgttaatttgatttgcattttaaggcatttttgttattttaaattgtaGCAAATCTTACCATGTAAGTAGATTGTGATGTCGTTGTGGATATTGTTTAAAGtcttatttgataaattcaataatgttttgtttaacGCTCGAGGCTTTTTTATGTAACTGTGAATAGTTACATTGAGTTTTATAAAGcgcaaatattttctctatGCATGCGTATCTTGGATCATCTGGTAAACAGTGACAATAAAATAGTGGAACATGCCATCTGACGAAGACCATGACGGGCTCGAGGCCGCTCCGATTAACCTATAGCGAGGCCAAGCACGAAATCGATAAGAGATGTACACACCCCAGTGTAGGCCTCTAAAGAGAAATAAAGCCTTTATTGTCAAGTTAATCAGTTGGTTTTGGCCTTTTTCATAGTTTATCAAGCAAAGGTTGCCCTTGTGCAGTAACCTCATTTTTAGTAAGGCGTTGGCCCCAAGTTGAGAGAGCTTCGTTAGATAAATACCGAATTTATACAATGATAACAGAGGATGTACTGAGTAAGTTCATCCACTTcggaaaatttccaaaactgtCCCTTGAGATACAAATGGGCCTTTTGAAATGACTTAAGcatttttgattttagcatttttgtaCAATCCTTTCTTTAGATTTACTCAACAAGGTTTTACCTAAACTCCCTTGACATAGCCAACTTGATGTGGCATTCATTAAAAGGAGgggtttattaaaaatttgaaggttGATGTTCTtcgaatatttcaaaatgcgtGATTTCTGGGGCTGGAGATTTATCTTCCAATTTCAAAACTCCGAATGTTAAAAGATTATGTTTTGTTCTTCCCAACTCAATTTCGGGTTATATTCTAAAGCCAGAAGCTTTGAGAGACAGTAACACAAAACCCtaaaatgtatgaaaattcttattttcaatatgttAAATAAGTTACAGATTTCCTGTAGACGTGAATAGGCTAGATACATCTAGAAAGGTCgttaaaagaaattagaaaactCCAAAACAAGACGTATTATTGTGTTAAGGGGGGCTTTTTGACGTTTCAATTCGCATTCCGAAGACCAACTGAGGTCTTTTCATCCAAATACTTTATtggaattttatttatttggaattttat

Protein

Pfam domain

Pfam accession	Pfam name	Description	Type	Source
PF18397 all species →	IKBKB_SDD	IQBAL scaffold dimerization domain	Domain	Interproscan
PF00069 all species →	Pkinase	Protein kinase domain	Domain	Interproscan

InterPro

InterPro term	Type	Description	Source
IPR041185 all species →	Domain	IKBKB, scaffold dimerization domain	Interproscan
IPR051180 all species →	Family	Inhibitor of nuclear factor kappa-B kinase	Interproscan
IPR000719 all species →	Domain	Protein kinase domain	Interproscan
IPR046375 all species →	Homologous_superfamily	IKBKB, scaffold dimerization domain superfamily	Interproscan
IPR011009 all species →	Homologous_superfamily	Protein kinase-like domain superfamily	Interproscan
IPR008271 all species →	Active_site	Serine/threonine-protein kinase, active site	Interproscan

PANTHER

PANTHER term	Description	Source
PTHR22969 all species →	IKB KINASE	Interproscan

Gene Ontology

GO term	Category	Description	Source
GO:0004674 all species →	Molecular Function	protein serine/threonine kinase activity	Interproscan
GO:0005737 all species →	Cellular Component	cytoplasm	Interproscan
GO:0008384 all species →	Molecular Function	IkappaB kinase activity	Interproscan
GO:0008385 all species →	Cellular Component	IkappaB kinase complex	Interproscan
GO:0018105 all species →	Biological Process	peptidyl-serine phosphorylation	Interproscan
GO:0033209 all species →	Biological Process	tumor necrosis factor-mediated signaling pathway	Interproscan
GO:0045944 all species →	Biological Process	positive regulation of transcription by RNA polymerase II	Interproscan
GO:0051092 all species →	Biological Process	positive regulation of NF-kappaB transcription factor activity	Interproscan
GO:0004672 all species →	Molecular Function	protein kinase activity	Interproscan
GO:0005524 all species →	Molecular Function	ATP binding	Interproscan
GO:0006468 all species →	Biological Process	protein phosphorylation	Interproscan

Search by domain instead of by gene. Any accession above (InterPro, Pfam, PANTHER, GO, KEGG) can be used as a query on the Functional Domain Search page, which searches all 148 annotated genomes at once.

KEGG pathway

KO	Enzyme	Enzyme ID	Pathway	Map ID	Source
K04467	IKBKA, IKKA, CHUK; inhibitor of nuclear factor kappa-B kinase subunit alpha	EC:2.7.11.10	Protein kinases	ko01001	deepkoala

Searching by KO or pathway ID across all species is available on the KEGG Pathway page.