Gene detail

Detailed information of XP_065051781.1 in Rhopilema esculentum

Genomic Location: ScUbCFx_1659:442326...455952
NR annotation: no NCBI-NR hit recorded
Species Rhopilema esculentum · all data for this species · gene families

Gene Structure

More details in JBrowse

Sequence

CDS

Transcript

rna-XM_065195709.1

GATTGTAGTTGTAGTTGCTACACATGATGACAGCAGTGTTGTTGTGCGAGTAAGAATTCAGTGGAGTAAGGAAGGAATGGAAAGTAACTGAAGATGAATTTAGATCGAGAAAATTCacagaaatttcagaaaaagttcTATCGAAGAACTGCTTTATTTACTTGGCTTTGGTGTGCCGCAATTTTGAACGCTGTGGATCTGAAGGTGGGACGGGAAAAAATCGTCAGACAGTTGTTGACTCAAGatgGATTAGATCTACCACAAATTCCACACAGGCCCTTTGCACCACATGTTCAAGTTATTGGTGAATCAGAAATCCAAGTTTCATGGTTGCCTGTCCTTGTATCTAACAAGCAAGCCATACAATATGAGCTTTACAGTGGTGATGATTTAGAATATGTTGGGTATGATTTAGCTTATGTTGCAAAGCGTCTCAAGCCTGCGACagaatataaatttaaagtcaGAGCCTGTGGTTTGTTTGGCTGCTCTGAATTCTCTCTAACGCGGTCTTGCAAGACACCTTTTAAGGctGTCAGCAAAAGAAGTAACTTAGagaaaaaacctttctttgGCAAGAGAAGAGTGTTTTTGCTGGTGCTTCCACCCCTCGCTATTGTAACATTGCTGACAACATTGGTCATCTTCACAGTATATTTCTGGAGgttCTTACGGTACTACCTTTGGCAGTATTCTGCAGTGTCCTTTGATGCCACCTTACCAAACAAGACTCTATTGCACTTCATCTATAACTTGGAGGTGGGCGATACGCAACAAGATTCATCCTCTGCGAAGGATACCTGCTTGGATATGCCGTTGGATCATTCTGCAGGCATTGAGAAGCAGCATGGCCAGGCTAAATCAAAGAGTAATTTGTTCAAAGATCAAGCCAAGCTGAAGAGACCACCAGAAATTATCTCCAAGATAAAGGAACCACGATCGGATTCTTGGGATATGTCACGAGCAAGGGCTTCAAGTCTGGGGAATGACCTTCCCAAGACCCCGAGAAAAGACAGATTACGCTCAGTCTCGGAGGGTGAAATCATGAAAACAGAAGCAGACCAGCCCTTGGAATTATCATTTGAGCAGCCTCCTAAAATAACTGGCCCAAGCGAAGAGTCCTTCATTGTTATCGATAACAGCAACGTTTTTATAGGCGCCCGTGAAGCAGCATGTGCCCGCAGTCCTAAACTTCGACCCAGGCACGTCAAAGTCCGTTTACAAGCATTAGCACATGTACTCGAGAACGGACGGAAAGTATCACGACGATTTGCCTGTGGATCTTCCCCCCCGGCCAACGAACACGTCTGGGATGTGTATAGACGCTTAGGCTATACGGTCGACCTCGAAGATCGAAGAGGGAAAGACGAGCAAAGAGTTGACGAACAGCTGCACCTGTACATTTACAAGGCAATAATTGAAATGCCGCCCCACACGCTGGTCCTAGCATCGGGAGATGGCAGCAAGGGAAAGAGCAGCGGAGGCACAAGCTTCCCAGAGTGCGCTTCTGCTGCAATTGAACACGGCTGGAACGTAGAGGTGCATTCTTGGAAACATAGTTTGAGTGCTGAATGGCTGAAACTTGCCGCTAAGCATAAAAGCAACTTTAAAATCAAGTACTTGGATGAGAACATAGACATGATAACTTCGATCGACTTGCGTGGAAGAAACCGCGATCGCATTGAAGAAAGTGGAAGAGATCGGAAACATGAAAGTAGATTCAGAGCTTGAGTTGcaaatttatagaaattttatgctATGAAAATTAAGTTAtcaaatttatctaaaaaggGTAACATGAACGTTCAATAAAACCATATTATGTTGAAAGATGTCATCTTAAAACTTCGCGTGTTACCATACTTTAAAagaatgacaaaatttcagaaagtATTTCTTAAGCTTCtttcataattatttaatTCAACTGATGATTTTCCACGAATCTTACGGgtttggttttattttaaaagattaagcTTCTTGCACACAAGTCTCGATCTCAGAAAAATTGCGAAGATTAACCTTTCAAACAATGCAAAGATTATCGCATTGACGGCCGTAGATTAAGCAAATTTTGGATCAACAGCTCCTTACcagcttcaatttttctcaacCATCTTCATGCagtcaatatttttcagaaatgttCACGTGATTTGCCAAAGCTTTGAAATACGTGCAAACCTATATTGTCGGGATTTGAttgctttaaattttacaaagagCTACAGTAACAGAACTATAATCCAATTATCAACACACCTTGTCGTTAAAACGTAAATGCTGTCTTTTTGTCAACGAAGAATATTGATTAACTTTATAACATTAGTTTTAAGTATTAGTTTTAAGGTTTGAACCTAAGTCTCGTTTGATCTTTTATACTTGGTATTCCAATTTTATTGCTTAATTTATCTTCCactcatttttatattaaagGTATAAGTTATTTTTCATACCGCTTTTATAACACTTTGCATAATACATTTATatttactttgcaaaaaatatacatGGCCCACTTGTTTGCTTTCTTCTCTCATTCTTATATACTTTGACATTCATTTCTATTGCCAGGAAATTCCTCAAGAATGGTGCAATTGCTCTAGCAGTGTCTACAACTATACTATGCAATTTGTCAATCCGACATCCCTTTTTGCCGTTCTGTTTCAATAAGCAAAGCTACAgcattttttttgaaaaagtattgaaaTATGATTCCAATGTTGTCGattaattttattgtttgcGCAAAAGATGTAGAAAAGATTATCCACAGTCAAGTAAAAAAGTACTTCGATGAAACTGTACCAACGTGCCTCTCGTGCACTCCACTAGAAGGATTCTTGCTTAGCTTACTTGGGTGATAAGATCCACCGAGGGTTTGAAAGTGATTTGCTAACAGGCATTTTGGTTGATCTACAAAAAGCACCCAACTGACCATgagattttcagaaaacagACATATATTGCAGGGCCTACGccatgaatttgaaatgtgagAGGTTCCCTCGAAGAATCGGGATGCATAAAAAGACGCTCTTGTTACCTCGGCAACAACTCCTCTTTCATGTAAAATAACTTACTTAAATATAAATTCACAAACAAAAGATGATTAAGAGCTAAGAAAATGTAAAGGGTTCATTCATTTAATTATACAGGAAAACGAGACTACGGATACTAAATTGTCCAATCATATTAGAGAAGGCTATTCCTGTTACAGAAAGTGAGGGGGACAAGGCTACCAAAAGTAGAGGCCAAggcagctttaaaactacttgctttgcaaaaaactgGGGGGGGGTGTCATGGCCCCCCGGTGGCGTGGGTCCTGTTTTGACTTCAATGACTCTTATCATTTGCTGTCATTATTGGAAAAGAATAATCAAAATCCAGTGATTAAAAATGGGTCAATCCGTGATCCAAGTGTATccttttttcagtaaatggTATGGCATGAGCGATCGACTGTGATCAACATATGTACGAAACGcagttttttttgcttcattttcagGGGCAAATACATTGAGGAGATAGAGACCAACTTGAGCACTTCTAAATCTCCATGTTAGTGGACTTCAGAGAACAAACTTGGAATTTACTTTGGAGTGGATAAAccaaatcaattattttcagataaaaagcCTCcaaaaggctaaaaaagctCAACATCAGGAGGGAGAAGTgtttaataaacaaaactcAGTAGGCCCATATGTCGTTTGGTGTTCTGAGTGAAATTCTTTCTGGGGAGTCGACGGCAAATAAAATGCTCTGAGAAAAGGCAAGCTAACAGttgtgcaaagaaaacaaaacttcttGGTTTATTCCCTTAACCATATCAAATTACATATTAGGGTTACCAAATTCAATAGTTTATGCTGATTTCCTATGCTACAGCCTGTTTGGTCCACTGGTCGCATAAAAGGTAACCTGTCAAGCATCTAAGGTAAATTCCTTGGAGATATAAACCACGTAGATCTTGAAGTTTGATTACAAACACTCTCATGACAACGGTACCGTTATGAGAATAAAAGATCCAGTTTGATATCAAATGACAGGACGCTTGGAAGCTTTAATCGTTTACGTTGTGTAGAAGGTTCTCCAATCTACCCATCCATAATATTTCTTGAGCGAAGAGCGAGCTGCCATATTCTGTAGGAGcaacttctttttctttctcagtTATCTGAAGTGGCTACATTGGCTCTTCTTCAAGTCTAGTGTGACTCTCAGTAAGACATTTTTCTGTGAATATGTCATAGCACATTTTGTCTAAAAGAAGGTTTTGTCTTTGCACGTACAAATAGGATTAAACGCCTTCTCGTGAGCTATGTACACAAGGTTTTGTTGTGATGAAAATTATcgttattataaaaaaaactgaacaGTTGCCAATATCAGACATGTACGATATAGCATAAAGTTCCAAGAACACGCTGGCACAGTTGAGCAACTCTTTTTGCCAGGGAAAGGGGCTAAGGGCCTAGTCCCCCATTAATTCCCCAAACGTACTGAACAAATCTTGATCTTAGCTTCAAGCATTTTGAGCATCGTAGCATAGCATGTATGCTCCACGAACACAGTTTCTTCGAATTTTCTATTGTTATTTGTTCGGACAGAGAATTGcacgttttttaaaaaataaaaaattgga

Protein

Pfam domain

Pfam accession	Pfam name	Description	Type	Source
PF01936 all species →	NYN	NYN domain	Domain	Interproscan

InterPro

InterPro term	Type	Description	Source
IPR003961 all species →	Domain	Fibronectin type III	Interproscan
IPR013783 all species →	Homologous_superfamily	Immunoglobulin-like fold	Interproscan
IPR036116 all species →	Homologous_superfamily	Fibronectin type III superfamily	Interproscan
IPR021139 all species →	Domain	NYN domain	Interproscan

PANTHER

No PANTHER signature was detected for XP_065051781.1. This gene does have a gene model — the search simply returned no hit.

Gene Ontology

GO term	Category	Description	Source
GO:0005515 all species →	Molecular Function	protein binding	Interproscan
GO:0004540 all species →	Molecular Function	RNA nuclease activity	Interproscan

Search by domain instead of by gene. Any accession above (InterPro, Pfam, PANTHER, GO, KEGG) can be used as a query on the Functional Domain Search page, which searches all 148 annotated genomes at once.

KEGG pathway

No KEGG orthology assignment for XP_065051781.1.

Searching by KO or pathway ID across all species is available on the KEGG Pathway page.