Gene detail

Detailed information of XP_065052020.1 in Rhopilema esculentum

Genomic Location: ScUbCFx_1659:9402636...9416280
NR annotation: no NCBI-NR hit recorded
Species Rhopilema esculentum · all data for this species · gene families

Gene Structure

More details in JBrowse

Sequence

CDS

Transcript

rna-XM_065195948.1

TTTCGTTGTTGTGGTTCTCTTTCTGCTCACCATACATGGCGGTTGGCTGGCCGACGAAAAGAGGCATTTCGATATGAAGGTCGTAGATACAGCTGTGAGCATGGATTGTAACAGCACTGACAGTACTGTTCATATGGAAGTCGACAATTACGACAAAGAGAAACTtgctgctttgaaaaaggaagagGGAAACAAGCTATATTCATCAAAAGATTATACTGGTGCAATTAAGCTATACTCAGAAGCTATTGaCCTTCAACCAACCAACTTTGCCTACTATGGAAACCGGTGTGCCTGTTATATTATGACTAAGGACTACCAAAGCGCTCTGAATGATGCCAGGAAATCAACTGCTTATAATAGTAACTTCACCAAGGGATACCTCAGAGAAGCAAAATGTCATATGACTTTGGGATCTGCATCTTTTGCCAAAAGATGTCTTCTCAAGGCCCTGGAAATCGACCCTAGCAACCCACAGGCAAAAACAGATATAAAAACTGCAAATGCAATGATGCAGTTTGAGTCCCAAGCCCAAGATGGAGAAAACTCTAAAGATTATAGAAAGgtGGAATATTGCATGAGGCGATTGGCTGAATATGTTCCagactgcaaaaaatataaagcGTCACAAGCTGAGGCAATGGTTCTTTTGGGAAAGATTGAAGAAGCACAGAATCTTGCAAATGAAATCTTAAGAAGTGACATCAGCGTAGTTGAGGCATTATACGTCAGAGGACTTTGTCTCTACTATCAAGATAATAATGAGAAAGCATACAGGGTTTTCCAGCAAATATTCAAGATGGATCCAGATTATAGAAAGGCCAAAGAAGTATACAGAAAAATTAAACtgttagaaaaaacaaaggaaagtGGCAACAATGCGTACAGAAATGGAAGGTTTCAGGAAGCCTATGATTTGTACACGCAAGCATTAGCAGTTGACCCATGCAACAAAGTGACAAATGCTAAACTTCATAGCAATCGAGCAAATGTTTGTGAAAAGTTAAACCGGATTGAAGATGCTATAGAAGACTGCAATCAAGCTATTGAATATGACCCAAAGTTCGTCAAGCCGATGTTACGGAGAGCCAAATGTTATatgcaaacagaaaaatacgAAGAAGCTGTTCGAGATTATGAAAAACTTGTCAGATTGGATAAAAACCCAGAGTATCGACAGCTCCTAAGAGAagcaaaattagaattgaaaaaaagcaaacgaAAGGATTACTACAAGATATTAGGTGTTTCAAAAACCGCAAGTGACGATGAGATGAAGAAGGCCTACCGTAAAGAAGCATTAAAACATCATCCAGatCGACATTCACACGATTcggaagaaaaacaaaaagatgaagaaaaactgTTCAAAGATgttAACGAAGCATACAGCGTATTATCAGACAGACAAAAACGAATGCGATATGACAATGGCCAAGATTTAGAAGATGTTGGTTTTGACATGGAATTTGATCCAAATCAGATCTTCCAAGCTTTCTTCGGCGGTGCTGCCGGACATGGAGGACATGGAGGACATAGCAACAGTGGATTTTCGTTTCCATCAGGCGGAGGCTTCCCTGGTGGattctctttttcatttggttAACACATCAGAATGAGACTCTTTCGCATCAAAACGTGATattgcaaattgaatttttattctttatccatgttttttatatctcTCATCTACAATCGTGTATGCTCTGCAATTGACTGATTtgtgatgaaattttgttctgtttCTGGGGCGCAAAAAAATAACTGAGTTACGTAGTGCTATGTGTTACACGAAGCACAGTATTTGAAGAACTAGAAAATACACACGCTCGCAGTTATTGCGCAAAAATTTGACGAGACCTGATAGTCGATATTCACACGTCTAAATTAATAGtcaaaaatcttgttttgttGGTGTTACGTTCAGCGATCACTCTAAGTCGTAAATAGACCataaagaagtaaaaaattgtataaCGTTGGTTTAATATcgagaaaataaaattgtcaatacTACTGTCATACGCTTGTATTGTCTGATTTCCCTTGTAGCTTCTTGTATaagaaaatgtataaaaaatttgcgatACGAGAA

Protein

Pfam domain

Pfam accession	Pfam name	Description	Type	Source
PF00515 all species →	TPR_1	Tetratricopeptide repeat	Repeat	Interproscan
PF00226 all species →	DnaJ	DnaJ domain	Domain	Interproscan
PF13174 all species →	TPR_6	Tetratricopeptide repeat	Repeat	Interproscan
PF07719 all species →	TPR_2	Tetratricopeptide repeat	Repeat	Interproscan

InterPro

InterPro term	Type	Description	Source
IPR001623 all species →	Domain	DnaJ domain	Interproscan
IPR019734 all species →	Repeat	Tetratricopeptide repeat	Interproscan
IPR052758 all species →	Family	Steroid receptor co-chaperone	Interproscan
IPR011990 all species →	Homologous_superfamily	Tetratricopeptide-like helical domain superfamily	Interproscan
IPR036869 all species →	Homologous_superfamily	Chaperone J-domain superfamily	Interproscan
IPR018253 all species →	Conserved_site	DnaJ domain, conserved site	Interproscan
IPR013105 all species →	Repeat	Tetratricopeptide repeat 2	Interproscan

PANTHER

PANTHER term	Description	Source
PTHR44200 all species →	DNAJ HOMOLOG SUBFAMILY C MEMBER 7	Interproscan

Gene Ontology

GO term	Category	Description	Source
GO:0005515 all species →	Molecular Function	protein binding	Interproscan

Search by domain instead of by gene. Any accession above (InterPro, Pfam, PANTHER, GO, KEGG) can be used as a query on the Functional Domain Search page, which searches all 148 annotated genomes at once.

KEGG pathway

KO	Enzyme	Enzyme ID	Pathway	Map ID	Source
K09527	DNAJC7; DnaJ homolog subfamily C member 7	-	Chaperones and folding catalysts	ko03110	deepkoala

Searching by KO or pathway ID across all species is available on the KEGG Pathway page.