Gene detail

Detailed information of XP_065052133.1 in Rhopilema esculentum

Genomic Location: ScUbCFx_1659:7500186...7521595
NR annotation: no NCBI-NR hit recorded
Species Rhopilema esculentum · all data for this species · gene families

Gene Structure

More details in JBrowse

Sequence

CDS

LOC135681539

ATGTCCGCAGTGGGAAGTGAAGCAGCTTCCATGCTTGAAAAGGCACTAGAGGAAATGGACGATATTTTCAAGGAAGCTGGGCAGCCTACCGTTTATCACTCACCACGGCACCATACAGGCGAAATCGGCAACAACATGGATAGCATAAGGATATTAATCGAGAATTTTGAGGTGCTTCTTGTTGAAAATAATTACCCATCTGGAATAAAGCGCCAGGAAGCAGAAGCACTTTTTCATTTGGCAAGCAAGCTGTCCTATTTCATGTTGTTTATAGAAGATGCGGTGGATCATTTGCATGGCCAGACTAGAGAGGATATCTTACACGAACTATCAAATGTGAAGAAAGAGAAAGAGGCTTTTCTTTTGCAAATTGGGCAACTGTCAACTGACCTTGAAAATGCTCAAAAGCAAATTGAACTTGGGATAAATACCAGTGAAGGGAAACAAAAGGAAAACACAAAACTGGGTGCTGAATTAAAAACAACAGCTGAAGCACATGACAAAAAGTCAACTACGCAAGATGAAAGCGCTATCGGTTTGAAGAAGCGGCTCCGCGAAAAAGCCTCAGAGGTTAACCGACTTAAGCTTATTGTCGATGATCTAAAGTTATCTCATGAGGAAAAGGATAATGCATTGTCGCGAATTCAAATTGAAATCGAGAGGCTGCGAGAGGAAAACGATTATTTGAAGACGTCTTTAGAAGCATCTCAAGCATCAAAGTTTGAGAAATCATTCAATGAAAACCATGCAGTCATGAATGGCATTGAAGATCAGAAATCAGAAGATGGCCTTGATAGCGACAGTGTCTTCCAAAACACAAGAAGCACCAGTGAACCAAATTTAACACGAAACTATGTCAAAAATGTTGGAATACCTGCAAACTCTGCCATCGCTAACAATTCAAATGGTAGAAGCTTCCCAGTGGAACAAAGAAGAAATGTTCTGGGCAACTCTTTCGCCACGTGGACCATGGAGCAGATAAATGATTGGTTAGAAGAAGAGGGACTGGCAGCATACATACCAGCGTTTACAAAAGCGATTGCCAGGGGAGATGATGTCTTCAAAATGAATAATCAAGAAATTGAAAAAGAATTAGGAATATCTTTACACATCCATCAAAAGAAACTAACACTTGCACTAAAGTCTTTACAGTCATTGGAACCAGACTATCCTGGAAGACTTGATCACAACTGGGTCGCAAGATGGCTTGATGATATTGGCCTTCCGCAGTATAAAGGCATTTTCTACGAAAATAGGGTCGACGGACGTATCTTACAGAATTTGACGCTTGACGACCTGTTTCACCTCAAAGTATACAACACGCTGCACCATGTTAGCTTAAAAAGAGCTATACAGTGTCTGAGGCATCAACAGTTTCATCCGAATTATCTAAAACCATGTCTTACGCCACAGAATGACGACAGATGCAATCATGTTATGTTATGGACAAACAGCCGGGTGATGGATTGGCTACGGTCTGTTGACCTCGCAGAATACGCTCCAAATCTAAGAGGCAGTGGAGTACATGGAGCCCTGATGATACTTGAGCCAAGATTCAACGCAGAGACGCTAGCGAATCTATTAGCAATCTCACAGAGCAAGACGCTGCTTAGGAGACATTTGCAATCCCAGTTCGAAACACTACTCACTGAAAGCTGCCTCAAGCAAAAACATATGACTGCAAAATCGCCTGATTTCATTCCTCTCAATTCATCAGAAAAACACAAGCTTCGCAAGAAGGGGCCATTTGGTACTTTGCGACGACGGAAGTCAGAACTTGAATTGGACCAATGCATATGTCCTGAAGATTTAGATATACCTCAGTGCCTCTCGCCTCCCCCTGCTCTTGATCCTGATGACGTGTTCGAATTTTCTGATACACTTTCGTCACCAGCAGTTAGCAACGAACAGAGCGGCAGTAACGAGAATTGTCTACAGCCGAAATCGATGGGCGAATTTTCTCACGAGATGACAAATCTAACGAGCATGCTCCATCACGCTAGATGA

Transcript

rna-XM_065196061.1

ACATGAAGTAAATCTCCTTAAATGTAGCAACACAAATGTGTGAATCACATACGAATCAGCAAGAGAACTCGAGGGCAAAAAGCTTATAGGCTTTCCTTAGTTGAAGCTCGTGGACAACACATACCGAAAATGTCCGCAGTGGGAAGTGAAGCAGCTTCCATGCTTGAAAAGGCACTAGAGGAAATGGACGATATTTTCAAGGAAGCTGGGCAGCCTACCGTTTATCACTCACCACGGCACCATACAGGCGAAATCGGCAACAACATGGATAGCATAAGGATATTAATCGAGAATTTTGAGGTGCTTcttgttgaaaataattacCCATCTGGAATAAAGCGCCAGGAAGCAGAAGCACTTTTTCATTTGGCAAGCAAGCTGTCCTATTTCATGTTGTTTATAGAAGATGCGGTGGATCATTTGcatGGCCAGACTAGAGAGGATATCTTACACGAACTATCAAATgtgaagaaagagaaagaggcttttcttttgcaaattggGCAACTGTCAACTGACCTTGAAAATGctcaaaagcaaattgaacTTGGGATAAATACCAGTGAAGGgaaacaaaaggaaaacacAAAACTGGGTGCTGAATTAAAAACAACAGCTGAAGCACATGACAAAAAGTCAACTACGCAAGATGAAAGCGCTATCGGTTTGAAGAAGCGGCTCCGCGAAAAAGcCTCAGAGGTTAACCGACTTAAGCTTATTGTCGATGATCTAAAGTTATCTCATGAGGAAAAGGATAATGCATTGTCGcgaattcaaattgaaatcgAGAGGCTGCGAGAGGAAAACGATTATTTGAAGACGTCTTTAGAAGCATCTCAAGCATCAAAGTTTGAGAAATCATTCAATGAAAACCATGCAGTCATGAATGGCATTGAAGATCAGAAATCAGAAGATGGCCTTGATAGCGACAGTGTCTTCCAAAACACAAGAAGCACCAGTGAACCAAATTTAACACGAAACTATGTCAAAAATGTTGGAATACCTGCAAACTCTGCCATCgcTAACAATTCAAATGGTAGAAGCTTCCCAGTGGAACAAAGAAGaaatgtTCTGGGCAACTCTTTCGCCACGTGGACCATGGAGCAGATAAATGATTGGTTAGAAGAAGAGGGACTGGCAGCATACATACCAGCGTTTACAAAAGCGATTGCCAGGGGAGATGATgtcttcaaaatgaataatcaagaaattgaaaaagaattaggAATATCTTTACACATCCATCAAAAGAAACTAACACTTGCACTAAAGTCTTTACAGTCATTGGAACCAGACTATCCTGGAAGACTTGATCACAACTGGGTCGCAAGATGGCTTGATGATATTGGCCTTCCGCAGTATAAAGGCATTTTCTACGAAAATAGGGTCGACGGACGTATCTTACAGAATTTGACGCTTGACGACCTGTTTCACCTCAAAGTATACAACACGCTGCACCATGTTAGCTTAAAAAGAGCTATACAGTGTCTGAGGCATCAACAGTTTCATCCGAATTATCTAAAACCATGTCTTACGCCACAGAATGACGACAGATGCAATCATGTTATGTTATGGACAAACAGCCGGGTGATGGATTGGCTACGGTCTGTTGACCTCGCAGAATACGCTCCAAATCTAAGAGGCAGTGGAGTACATGGAGCCCTGATGATACTTGAGCCAAGATTCAACGCAGAGACGCTAGCGAATCTATTAGCAATCTCACAGAGCAAGACGCTGCTTAGGAGACATTTGCAATCCCAGTTCGAAACACTACTCACTGAAAGCTGCCTCAAGCAAAAACATATGACTGCAAAATCGCCTGATTTCATTCCTCTCAATTCATCAGAAAAACACAAGCTTCGCAAGAAGGGGCCATTTGGTACTTTGCGACGACGGAAGTCAGAACTTGAATTGGACCAATGCATATGTCCTGAAGATTTAGATATACCTCAGTGCCTCTCGCCTCCCCCTGCTCTTGATCCTGATGACGTGTTCGAATTTTCTGATACACTTTCGTCACCAGCAGTTAGCAACGAACAGAGCGGCAGTAACGAGAATTGTCTACAGCCGAAATCGATGGGCGAATTTTCTCACGAGATGACAAATCTAACgAGCATGCTCCATCACGCTAGATGAGTCAGACATGGCTGCCACATGGGCTTTTCTCTTGTCCTTTTACTAGCGCCAAGAGAAAAGGCCTTACTCCAACTCAACGCTGATTTGCTGGGAGTGAAGATCAAATTGCTTTCTGCTCTAAGATATAAATGGGTTTTCCATGGGATTCTTGTAGCTAGCAAATACATTCCCACTAAAAGATTTAGAAGTACGTGAAACTAGTCCTTATGACTTCCATATTTAAGTACTTTAATATCTTAAACTACTTTCATTTAAACATCATAATATTCAATAGCGAGCGAATTATAACGATATTTTAATTATCGATTTCTAAGTTTCTTTGTACAGTTATCATATGATATATCGCCAAGACTTGAAACACTAATTGTGTACATATTAAGGACAATGAATTTATCTCTGTATTTGTTGCATGTGCAGTTTCTTAGTCCGTGTCTATTGCATTATACTGATCGTGTGTTTGTCATTTCGtataattttgtaaagttcTGTTTGTGTCTTTGGGCGTCTGTAATTTCACCGTTGTGTGTTTGGCGAATAATTGATATATACTTATGAATTACAGTTAAATGATAGAAGTAATGAATTTCGGTGTCTGGTTAAACGTGTGAACTTTTGCGTTTTTTGTTGACCCAGTGTCATAGGTTGAAGGAACCAGCTGAGTCAAGAAAGGTATCGACGTGTTATTTTGTAAAGCTGGTGTAGGTTGAAGCCTCTGCAAGAAATGgcttttgtttataaacacAACAGACACGATTCGtgtcatcaaatttgatacaGTATAGTTCTGCTAAACAACTTTGTTATTCACTTTCATCCTGACTTTCTTCTGTTTGTTTACCTTAAACCAAATATGTCAGTGGATTGATTATCGTTTGTGTTCAAAAAGCTTAGAGATCTTGGGCATTAACTCCGATTTTGCAGCAGTAGACACTCCAAATAGTTAGTGTTTCCTTGTGTCTCAGAGATGGTTTTCACTTTTCAAGCCAGCTGTTTCTCTCTAGCAATTCAATATTCGCAAATAGTATCAATTCAAAAGGTTTTCTCTGTCGTAGACgtcgtcaatttttttcaagtaacGTTGAAATTATCGTTTAGATATCGACCTAGTTCTAGATTTGTTGGAAATTATATTAGCACATAATAACTTAATGCTTATCtgttaatcaaatattttgtaatcaGTTGTATATAGTAAATATTGGTGTATAACCAGTCCCATATCATCTTCTCCTTTTAGATAATAGAGTATGATTTTGTATGTCATTGTACCTCTAGAATATcagtcattttttg

Protein

Pfam domain

Pfam accession	Pfam name	Description	Type	Source
PF00536 all species →	SAM_1	SAM domain (Sterile alpha motif)	Domain	Interproscan
PF07647 all species →	SAM_2	SAM domain (Sterile alpha motif)	Domain	Interproscan

InterPro

InterPro term	Type	Description	Source
IPR029515 all species →	Family	LAR-interacting protein, Liprin	Interproscan
IPR001660 all species →	Domain	Sterile alpha motif domain	Interproscan
IPR013761 all species →	Homologous_superfamily	Sterile alpha motif/pointed domain superfamily	Interproscan
IPR037619 all species →	Domain	Liprin-beta, SAM domain repeat 3	Interproscan
IPR037618 all species →	Domain	Liprin-beta, SAM domain repeat 2	Interproscan

PANTHER

PANTHER term	Description	Source
PTHR12587 all species →	LAR INTERACTING PROTEIN LIP -RELATED PROTEIN	Interproscan

Gene Ontology

GO term	Category	Description	Source
GO:0007528 all species →	Biological Process	neuromuscular junction development	Interproscan
GO:0048786 all species →	Cellular Component	presynaptic active zone	Interproscan
GO:0050808 all species →	Biological Process	synapse organization	Interproscan
GO:0005515 all species →	Molecular Function	protein binding	Interproscan

Search by domain instead of by gene. Any accession above (InterPro, Pfam, PANTHER, GO, KEGG) can be used as a query on the Functional Domain Search page, which searches all 148 annotated genomes at once.

KEGG pathway

KO	Enzyme	Enzyme ID	Pathway	Map ID	Source
K27096	PPFIBP; liprin-beta	-	Membrane trafficking	ko04131	deepkoala

Searching by KO or pathway ID across all species is available on the KEGG Pathway page.